jgi.p|Nanoce1779_2|606250, mRNA_9514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606250
Unique NamemRNA_9514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1391
Alignment locationscaffold_34:217226..218616 +

Link to JBrowse

Properties
Property NameValue
TranscriptId606336
TrackFilteredModels2
ProteinId606250
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:217226..218616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606250gene_9514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606250mRNA_9514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9514CDS_9514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9514 ID=mRNA_9514|Name=jgi.p|Nanoce1779_2|606250|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
GTGAAAGTGGAGAAGCACGAATGATATGTCGATTTATGTCTTCCTCCTCC
CCTTTCCTCGTCTTGTGGCCACATCTCCAGTCAGTGGTAGCACGGGCATC
AAGAGTGTGGCGACTCCTATTGAGGATAAAGTTGTGCATGACCTGTCCTG
TCGCTCCGACGCAACCAAATGGGGCCGCGGTAATTGTGTTCCGTGGGTCA
ATTTTTTCCAGCTGAACACAAACGTCTTTTACCAATGAGTTTGCGCCTGC
CTGTTGAAAACATTTACGAGTAGGCTCACGCAACATCACGAGATCCTTGG
TGCATGTTGTTGTCGTCAGGCCGCGCGAGTGCGACGCCACGCAGCACCGA
AACCTCTCAACGGCTTATCGCTGCCGTCGCTGCCAAATATTCAGAGATGG
CCCATGGACAAGAGCCTTTTTCAGTCCTGCCCTGCCCACGCTAAAAATCT
ACCCCCTCGCCTTGTATTATCTGCAGAAAGACCCTATTCTATACACGCTT
TATATATCACTTTGACAGAGAGGAGGCGGACCCTTTGACCCTTCAAATTC
CAGCATGATAAGTACTTCACCCCTTCTTCCCCTTGTTCTTCTTCTCCTGT
ACTGCCTTGTCTAGTAGCCCTTCCTTTTTATCAGAATATCCATCCCAAAG
TATCTCACCGTTATAAATCCACAGATATGCCATAGACTATTTCCTACCAA
GAAATGTGCGGTCTCGCAATTTCACAGCACAGATATCACCCTCTGGTGTA
GGAGCGACGAGTCCACGTCCGCGAGCACGACGGGGGGAGAAGAAATATGC
ATGCAACGTCGAAGGATAATCCACAAAGGATGGAAAATAATAGACGCCAT
CTTTAGATATTTGGACCTTCAAGAATGTACCGGATCCGAGAATGACCTTC
CCTACTGTAAGTGGGGCTCAGCGAGAGGAAAAAACATTTTTAGGGTAGAT
AGAGGGGTGTTATACCTCCCGAATTATCTCGGCGGACGGGCCAGAAGGCA
GGGTCGATTCTGAGATAAGCTGTATCTGGCATTGCCCCGATATAAATACG
TCGACCTCAATGTCCAAGCCATCCGCCTTTACCCCAGTAATCCTCGACAG
GAGGACACCCAGTGCCAAAAAAGACTGCCGTCGCCAGGCTCTTACCGAGG
CAGAACACTTTAAAGATTTTACGAAGTCTCACATAATTACGTGATTCACT
TTTGGGAGAAGGCGAATAGAGCGCAGAGAGGTATGATAAGGCGTAATGTG
CGTAGAGGAGGTATAGACGAAGGATCTTGGTGCAGCGACTTAACGACTAA
AGTTTAGCTTGAGAAGCCCAAAATGCCAACAGGGTTACCGGAATTAATAA
AAGTTTCCCTCTAACGAATAACAAAGAAAAATCTACTGCAT
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protein sequence of jgi.p|Nanoce1779_2|606250

>mRNA_9514-protein ID=mRNA_9514-protein|Name=jgi.p|Nanoce1779_2|606250|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MSIYVFLLPFPRLVATSPVSGSTGIKSVATPIEDKVVHDLSCRSDATKWG
RGNCVPWVNFFQLNTNVFYQ*
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mRNA from alignment at scaffold_34:217226..218616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9514 ID=mRNA_9514|Name=jgi.p|Nanoce1779_2|606250|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at scaffold_34:217226..218616+ (Nannochloropsis oceanica)
GTGAAAGTGGAGAAGCACGAATGATATGTCGATTTATGTCTTCCTCCTCC
CCTTTCCTCGTCTTGTGGCCACATCTCCAGTCAGTGGTAGCACGGGCATC
AAGAGTGTGGCGACTCCTATTGAGGATAAAGTTGTGCATGACCTGTCCTG
TCGCTCCGACGCAACCAAATGGGGCCGCGGTAATTGTGTTCCGTGGGTCA
ATTTTTTCCAGCTGAACACAAACGTCTTTTACCAATGAGTTTGCGCCTGC
CTGTTGAAAACATTTACGAGTAGGCTCACGCAACATCACGAGATCCTTGG
TGCATGTTGTTGTCGTCAGGCCGCGCGAGTGCGACGCCACGCAGCACCGA
AACCTCTCAACGGCTTATCGCTGCCGTCGCTGCCAAATATTCAGAGATGG
CCCATGGACAAGAGCCTTTTTCAGTCCTGCCCTGCCCACGCTAAAAATCT
ACCCCCTCGCCTTGTATTATCTGCAGAAAGACCCTATTCTATACACGCTT
TATATATCACTTTGACAGAGAGGAGGCGGACCCTTTGACCCTTCAAATTC
CAGCATGATAAGTACTTCACCCCTTCTTCCCCTTGTTCTTCTTCTCCTGT
ACTGCCTTGTCTAGTAGCCCTTCCTTTTTATCAGAATATCCATCCCAAAG
TATCTCACCGTTATAAATCCACAGATATGCCATAGACTATTTCCTACCAA
GAAATGTGCGGTCTCGCAATTTCACAGCACAGATATCACCCTCTGGTGTA
GGAGCGACGAGTCCACGTCCGCGAGCACGACGGGGGGAGAAGAAATATGC
ATGCAACGTCGAAGGATAATCCACAAAGGATGGAAAATAATAGACGCCAT
CTTTAGATATTTGGACCTTCAAGAATGTACCGGATCCGAGAATGACCTTC
CCTACTGTAAGTGGGGCTCAGCGAGAGGAAAAAACATTTTTAGGGTAGAT
AGAGGGGTGTTATACCTCCCGAATTATCTCGGCGGACGGGCCAGAAGGCA
GGGTCGATTCTGAGATAAGCTGTATCTGGCATTGCCCCGATATAAATACG
TCGACCTCAATGTCCAAGCCATCCGCCTTTACCCCAGTAATCCTCGACAG
GAGGACACCCAGTGCCAAAAAAGACTGCCGTCGCCAGGCTCTTACCGAGG
CAGAACACTTTAAAGATTTTACGAAGTCTCACATAATTACGTGATTCACT
TTTGGGAGAAGGCGAATAGAGCGCAGAGAGGTATGATAAGGCGTAATGTG
CGTAGAGGAGGTATAGACGAAGGATCTTGGTGCAGCGACTTAACGACTAA
AGTTTAGCTTGAGAAGCCCAAAATGCCAACAGGGTTACCGGAATTAATAA
AAGTTTCCCTCTAACGAATAACAAAGAAAAATCTACTGCAT
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Coding sequence (CDS) from alignment at scaffold_34:217226..218616+

>mRNA_9514 ID=mRNA_9514|Name=jgi.p|Nanoce1779_2|606250|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_34:217226..218616+ (Nannochloropsis oceanica)
ATGTCGATTTATGTCTTCCTCCTCCCCTTTCCTCGTCTTGTGGCCACATC
TCCAGTCAGTGGTAGCACGGGCATCAAGAGTGTGGCGACTCCTATTGAGG
ATAAAGTTGTGCATGACCTGTCCTGTCGCTCCGACGCAACCAAATGGGGC
CGCGGTAATTGTGTTCCGTGGGTCAATTTTTTCCAGCTGAACACAAACGT
CTTTTACCAATGA
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Synonyms
Publications