jgi.p|Nanoce1779_2|606236, mRNA_9511 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606236
Unique Name	mRNA_9511
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1926
Alignment location	scaffold_34:203600..205611 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606322
Track	FilteredModels2
ProteinId	606236

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:203600..205611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606236	gene_9511	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606236	mRNA_9511-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9511	CDS_9511	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:203600..205611+
coding sequence from alignment at scaffold_34:203600..205611+

mRNA sequence

>mRNA_9511 ID=mRNA_9511|Name=jgi.p|Nanoce1779_2|606236|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
GAAGAACATGGCCCGTCTTACCCTCCCATAATTTTTCAACCTCAAACACA
GCCATCAAAGCATGCCCTTGTGTGTTTCCTCCCCATCTTCCACCAGCAGT
CGCTATCTTCATCTCAACAGAGACGGCAGCGACGACGACGACGACTTATT
CGTACAATTGCGGAATAGTCATCATGACCACCGAAATTACAATCAATGTC
GCCTCCACTTTCAGCGCCATATTTTCCATCAAGGCCAGCATCTACCTAAT
CTTGAACTCAAAATGCCGCTGCTGACCTTGGGGGCTCTTAACCCACGCTT
GCAATCGCTCTACACCCACCTCTCGTCGTCTTGCTGTCTTTCCTGCCCGC
CATCAACACGGCCTCCACCTCCACTTCCAGAATCTTGTAGTTTGAAGGGT
ATGCTATGTCTCTGCCGCGATAATAATCAGAAGCACCGTTCGTCAAAGCA
CTGTCGTTGTCGTCACCACCAGCACAATAAGGAGCAGTGTAGCAAGGAGA
AGGAGAAAGAAAATGAGAAGGGCATCACGACCTTACATGCAGCCTGCCAA
GCAAGGGAACGGCAGTGCCAGCAAAAGAATGATTCGGTGGAGCAATCTCA
GCGGCACTCTTCGGCGGCATCATGTCGTTGTCGTCACCACCAGCACAATA
AGGAGCAGTGTAGCAAGGAGAAGGAGAAAGAAAATGAGAAGGGCATCACG
ACCTTACATGCAGCCTGCCAAGCAAGGGAACGGCAGCGCCAGCAAAAGAA
TGATACGGTGGAGCAATCTCAGCGGCACTCTTCGGCGGCGTCATGGAAGT
GGCAGAAAAGGGATAAGTTAGAAGAGAGGAAAGAGGAAGAGTGGAAGGAG
GAAGTGAAAGATGGCAAACAAAGTAGAGACCCGAAAAATCATTTTTTCGA
CTACCCTAGAGACTTTAACTTGTGTGCATTTCATTGTTCCGCACCATCTC
CCATTCCCCCCTCTGTGCTTCCAACCTCCCCACCACCAGCATACTGGCGT
CCTGACGAAGAAAAGAGTGAAGATGGTCAGGCCCTGGTACGAGGTCTCGA
GGAAGAGGTAAGCAAGCTTTTCTTGCAAAGACACAATCATTGTCGACGCC
AGCCCCCAACAGTCTCTTTTTCTCCATCTCCTTCTGCTCTGATTCACCGA
AAGCATCAAGTGCTCCGGAAGCTGTCGACGTTGGCATCTCCAACCACGTC
GCCCATGCGGCAGCAGGAGAAGAGGATGCGACGAAAAGTCGACGGATATG
AAGGACCGCCTTGGGTGCCACCGTAAATGCGTGATGAAGGGGGGAGGTGG
AAAGGATACAATGAAGGCAAGCAAGAGGAAATAACCCATGATGCTACCCG
AATATTTTTGGCGCGTTCTAGTAAGGGCTAACCGTAACCCTATTGTTGTT
GCACTTAAAGGCACAAAATTCTGTTTCTGTTTTCAATCATTTCTATGACA
CTTCCAAGGATTGCAAGCACGCGAGAGAAGGGGAGGAAAGAAGATAGAAA
GAGGACAAGTGTGGCTACTTAAAAGTCGAAAGGAGCCTCTTGTCGCACTC
AATCAAACACAAGTGCGATTGAGACATAGGACGAGTCACAGTATAGGACT
CCTCATTTTGGCCCTCCCTCCGCGCGGTGCCTTACCTTGTGTTCGCTTCT
TGGACGTCTCGTTTACGCAATCACACTTTTGCAGCAGGTAATCCGTGTCC
TAATCGACGCATTGAAAGGTGGGACACCTTGTGCCAAGACTTTGCACTGC
ACCGTGTAGATTCACACGGAATGTCGGAGATGAATGCGGCGGAGGCAGAG
ATGTCCGATGGAACAATTGTCTCCCAAAAGCGTGCAGATTTGGGATAAAG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAGAGAGAGAGA
ATGAGAGAGAACAAGAGAGAGAGAGA

protein sequence of jgi.p|Nanoce1779_2|606236

>mRNA_9511-protein ID=mRNA_9511-protein|Name=jgi.p|Nanoce1779_2|606236|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MPLCVSSPSSTSSRYLHLNRDGSDDDDDLFVQLRNSHHDHRNYNQCRLHF
QRHIFHQGQHLPNLELKMPLLTLGALNPRLQSLYTHLSSSCCLSCPPSTR
PPPPLPESCSLKGMLCLCRDNNQKHRSSKHCRCRHHQHNKEQCSKEKEKE
NEKGITTLHAACQARERQCQQKNDSVEQSQRHSSAASCRCRHHQHNKEQC
SKEKEKENEKGITTLHAACQARERQRQQKNDTVEQSQRHSSAASWKWQKR
DKLEERKEEEWKEEVKDGKQSRDPKNHFFDYPRDFNLCAFHCSAPSPIPP
SVLPTSPPPAYWRPDEEKSEDGQALVRGLEEEVSKLFLQRHNHCRRQPPT
VSFSPSPSALIHRKHQVLRKLSTLASPTTSPMRQQEKRMRRKVDGYEGPP
WVPP*

mRNA from alignment at scaffold_34:203600..205611+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9511 ID=mRNA_9511|Name=jgi.p|Nanoce1779_2|606236|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at scaffold_34:203600..205611+ (Nannochloropsis oceanica)
GAAGAACATGGCCCGTCTTACCCTCCCATAATTTTTCAACCTCAAACACA
GCCATCAAAGCATGCCCTTGTGTGTTTCCTCCCCATCTTCCACCAGCAGT
CGCTATCTTCATCTCAACAGAGACGGCAGCGACGACGACGACGACTTATT
CGTACAATTGCGGTAAGCTCATCTGTGCCTCCCCAAATTAGCCTTCCTCA
TGTGGCTCATCCTCCCCCCAAAAATCCCTTTTCCCTTCCATGTCACAGGA
ATAGTCATCATGACCACCGAAATTACAATCAATGTCGCCTCCACTTTCAG
CGCCATATTTTCCATCAAGGCCAGCATCTACCTAATCTTGAACTCAAAAT
GCCGCTGCTGACCTTGGGGGCTCTTAACCCACGCTTGCAATCGCTCTACA
CCCACCTCTCGTCGTCTTGCTGTCTTTCCTGCCCGCCATCAACACGGCCT
CCACCTCCACTTCCAGAATCTTGTAGTTTGAAGGGTATGCTATGTCTCTG
CCGCGATAATAATCAGAAGCACCGTTCGTCAAAGCACTGTCGTTGTCGTC
ACCACCAGCACAATAAGGAGCAGTGTAGCAAGGAGAAGGAGAAAGAAAAT
GAGAAGGGCATCACGACCTTACATGCAGCCTGCCAAGCAAGGGAACGGCA
GTGCCAGCAAAAGAATGATTCGGTGGAGCAATCTCAGCGGCACTCTTCGG
CGGCATCATGTCGTTGTCGTCACCACCAGCACAATAAGGAGCAGTGTAGC
AAGGAGAAGGAGAAAGAAAATGAGAAGGGCATCACGACCTTACATGCAGC
CTGCCAAGCAAGGGAACGGCAGCGCCAGCAAAAGAATGATACGGTGGAGC
AATCTCAGCGGCACTCTTCGGCGGCGTCATGGAAGTGGCAGAAAAGGGAT
AAGTTAGAAGAGAGGAAAGAGGAAGAGTGGAAGGAGGAAGTGAAAGATGG
CAAACAAAGTAGAGACCCGAAAAATCATTTTTTCGACTACCCTAGAGACT
TTAACTTGTGTGCATTTCATTGTTCCGCACCATCTCCCATTCCCCCCTCT
GTGCTTCCAACCTCCCCACCACCAGCATACTGGCGTCCTGACGAAGAAAA
GAGTGAAGATGGTCAGGCCCTGGTACGAGGTCTCGAGGAAGAGGTAAGCA
AGCTTTTCTTGCAAAGACACAATCATTGTCGACGCCAGCCCCCAACAGTC
TCTTTTTCTCCATCTCCTTCTGCTCTGATTCACCGAAAGCATCAAGTGCT
CCGGAAGCTGTCGACGTTGGCATCTCCAACCACGTCGCCCATGCGGCAGC
AGGAGAAGAGGATGCGACGAAAAGTCGACGGATATGAAGGACCGCCTTGG
GTGCCACCGTAAATGCGTGATGAAGGGGGGAGGTGGAAAGGATACAATGA
AGGCAAGCAAGAGGAAATAACCCATGATGCTACCCGAATATTTTTGGCGC
GTTCTAGTAAGGGCTAACCGTAACCCTATTGTTGTTGCACTTAAAGGCAC
AAAATTCTGTTTCTGTTTTCAATCATTTCTATGACACTTCCAAGGATTGC
AAGCACGCGAGAGAAGGGGAGGAAAGAAGATAGAAAGAGGACAAGTGTGG
CTACTTAAAAGTCGAAAGGAGCCTCTTGTCGCACTCAATCAAACACAAGT
GCGATTGAGACATAGGACGAGTCACAGTATAGGACTCCTCATTTTGGCCC
TCCCTCCGCGCGGTGCCTTACCTTGTGTTCGCTTCTTGGACGTCTCGTTT
ACGCAATCACACTTTTGCAGCAGGTAATCCGTGTCCTAATCGACGCATTG
AAAGGTGGGACACCTTGTGCCAAGACTTTGCACTGCACCGTGTAGATTCA
CACGGAATGTCGGAGATGAATGCGGCGGAGGCAGAGATGTCCGATGGAAC
AATTGTCTCCCAAAAGCGTGCAGATTTGGGATAAAGGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAATGAGAGAGAGAGAGAATGAGAGAGAACAA
GAGAGAGAGAGA

Coding sequence (CDS) from alignment at scaffold_34:203600..205611+

>mRNA_9511 ID=mRNA_9511|Name=jgi.p|Nanoce1779_2|606236|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_34:203600..205611+ (Nannochloropsis oceanica)
ATGCCCTTGTGTGTTTCCTCCCCATCTTCCACCAGCAGTCGCTATCTTCA
TCTCAACAGAGACGGCAGCGACGACGACGACGACTTATTCGTACAATTGC
GGAATAGTCATCATGACCACCGAAATTACAATCAATGTCGCCTCCACTTT
CAGCGCCATATTTTCCATCAAGGCCAGCATCTACCTAATCTTGAACTCAA
AATGCCGCTGCTGACCTTGGGGGCTCTTAACCCACGCTTGCAATCGCTCT
ACACCCACCTCTCGTCGTCTTGCTGTCTTTCCTGCCCGCCATCAACACGG
CCTCCACCTCCACTTCCAGAATCTTGTAGTTTGAAGGGTATGCTATGTCT
CTGCCGCGATAATAATCAGAAGCACCGTTCGTCAAAGCACTGTCGTTGTC
GTCACCACCAGCACAATAAGGAGCAGTGTAGCAAGGAGAAGGAGAAAGAA
AATGAGAAGGGCATCACGACCTTACATGCAGCCTGCCAAGCAAGGGAACG
GCAGTGCCAGCAAAAGAATGATTCGGTGGAGCAATCTCAGCGGCACTCTT
CGGCGGCATCATGTCGTTGTCGTCACCACCAGCACAATAAGGAGCAGTGT
AGCAAGGAGAAGGAGAAAGAAAATGAGAAGGGCATCACGACCTTACATGC
AGCCTGCCAAGCAAGGGAACGGCAGCGCCAGCAAAAGAATGATACGGTGG
AGCAATCTCAGCGGCACTCTTCGGCGGCGTCATGGAAGTGGCAGAAAAGG
GATAAGTTAGAAGAGAGGAAAGAGGAAGAGTGGAAGGAGGAAGTGAAAGA
TGGCAAACAAAGTAGAGACCCGAAAAATCATTTTTTCGACTACCCTAGAG
ACTTTAACTTGTGTGCATTTCATTGTTCCGCACCATCTCCCATTCCCCCC
TCTGTGCTTCCAACCTCCCCACCACCAGCATACTGGCGTCCTGACGAAGA
AAAGAGTGAAGATGGTCAGGCCCTGGTACGAGGTCTCGAGGAAGAGGTAA
GCAAGCTTTTCTTGCAAAGACACAATCATTGTCGACGCCAGCCCCCAACA
GTCTCTTTTTCTCCATCTCCTTCTGCTCTGATTCACCGAAAGCATCAAGT
GCTCCGGAAGCTGTCGACGTTGGCATCTCCAACCACGTCGCCCATGCGGC
AGCAGGAGAAGAGGATGCGACGAAAAGTCGACGGATATGAAGGACCGCCT
TGGGTGCCACCGTAAATGCCCTTGTGTGTTTCCTCCCCATCTTCCACCAG
CAGTCGCTATCTTCATCTCAACAGAGACGGCAGCGACGACGACGACGACT
TATTCGTACAATTGCGGAATAGTCATCATGACCACCGAAATTACAATCAA
TGTCGCCTCCACTTTCAGCGCCATATTTTCCATCAAGGCCAGCATCTACC
TAATCTTGAACTCAAAATGCCGCTGCTGACCTTGGGGGCTCTTAACCCAC
GCTTGCAATCGCTCTACACCCACCTCTCGTCGTCTTGCTGTCTTTCCTGC
CCGCCATCAACACGGCCTCCACCTCCACTTCCAGAATCTTGTAGTTTGAA
GGGTATGCTATGTCTCTGCCGCGATAATAATCAGAAGCACCGTTCGTCAA
AGCACTGTCGTTGTCGTCACCACCAGCACAATAAGGAGCAGTGTAGCAAG
GAGAAGGAGAAAGAAAATGAGAAGGGCATCACGACCTTACATGCAGCCTG
CCAAGCAAGGGAACGGCAGTGCCAGCAAAAGAATGATTCGGTGGAGCAAT
CTCAGCGGCACTCTTCGGCGGCATCATGTCGTTGTCGTCACCACCAGCAC
AATAAGGAGCAGTGTAGCAAGGAGAAGGAGAAAGAAAATGAGAAGGGCAT
CACGACCTTACATGCAGCCTGCCAAGCAAGGGAACGGCAGCGCCAGCAAA
AGAATGATACGGTGGAGCAATCTCAGCGGCACTCTTCGGCGGCGTCATGG
AAGTGGCAGAAAAGGGATAAGTTAGAAGAGAGGAAAGAGGAAGAGTGGAA
GGAGGAAGTGAAAGATGGCAAACAAAGTAGAGACCCGAAAAATCATTTTT
TCGACTACCCTAGAGACTTTAACTTGTGTGCATTTCATTGTTCCGCACCA
TCTCCCATTCCCCCCTCTGTGCTTCCAACCTCCCCACCACCAGCATACTG
GCGTCCTGACGAAGAAAAGAGTGAAGATGGTCAGGCCCTGGTACGAGGTC
TCGAGGAAGAGGTAAGCAAGCTTTTCTTGCAAAGACACAATCATTGTCGA
CGCCAGCCCCCAACAGTCTCTTTTTCTCCATCTCCTTCTGCTCTGATTCA
CCGAAAGCATCAAGTGCTCCGGAAGCTGTCGACGTTGGCATCTCCAACCA
CGTCGCCCATGCGGCAGCAGGAGAAGAGGATGCGACGAAAAGTCGACGGA
TATGAAGGACCGCCTTGGGTGCCACCGTAA

Synonyms

Publications