jgi.p|Nanoce1779_2|606232, mRNA_9510 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606232
Unique NamemRNA_9510
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length903
Alignment locationscaffold_34:201797..203362 -

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Properties
Property NameValue
TranscriptId606318
TrackFilteredModels2
ProteinId606232
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:201797..203362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606232gene_9510Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606232mRNA_9510-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9510CDS_9510Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9510 ID=mRNA_9510|Name=jgi.p|Nanoce1779_2|606232|organism=Nannochloropsis oceanica|type=mRNA|length=903bp
ACAGGAGAGAATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTCC
TCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTTT
TTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTGG
GCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGGA
CATTAATGGGGGACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCT
GCTCGCGACGACGTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCAC
CATCACCAACAGTAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCC
CTTCCGCCGCTCCTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGA
GATCTGACGGGTGCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTC
TGTGGGGCTCTACTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGA
ATCCTGGTGTTTCGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACT
TTAGTGTACGTCTCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACA
AACCGAAAACGGGTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGA
CGAGCTTGAAGGAGAAATATAGAGTCTGGTCTATGCACGAAGACAAAGCC
TTTAAAGGAAGACGGGTATCTGGTATTCCGACAATGATGGTGGTGGGAAA
GGATGGGGAGGAAATGGCTCGCTTGGATGTGGGTATGAAGGGGGTAGATG
AGCTTGCTAAATGGAATTATGTGGAGTGGAAGTGGGAATAAAGGAGGAAG
GGGGGGGGAGGTAAGATGGGGAGGAGCGAGAAGTTATGTTAAAAGAAAAT
TTC
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protein sequence of jgi.p|Nanoce1779_2|606232

>mRNA_9510-protein ID=mRNA_9510-protein|Name=jgi.p|Nanoce1779_2|606232|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MPRLKSHSGSGGLLLSHGSSSRRILALKLFLLGMGGCALLAAVYLPGRET
GIASENIRESNMRTLMGDTPAEADLLGASPARDDVIPPPDSSTAIATITN
SSSSITTVAVAPTPSAAPALLLFPADAQLRDLTGALINANEALAGKSVGL
YFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTEN
GWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGE
EMARLDVGMKGVDELAKWNYVEWKWE*
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mRNA from alignment at scaffold_34:201797..203362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9510 ID=mRNA_9510|Name=jgi.p|Nanoce1779_2|606232|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_34:201797..203362- (Nannochloropsis oceanica)
ACAGGAGAGAATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTCC
TCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTTT
TTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTGG
GCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGGA
CATTAATGGGGGTGGGTACTGTGGTCAAGGGTGGTCGCCTGGCAGGAAAA
TGGAAGGGATGATGAGAAGAAGGAGAGTGAGAAGGAATATTCGATAGTAC
CGATCACTGGATATGGCACACGACGGCGCAGCCATCGTTACCTAGCCCTC
TTGAGTGTCCTTGAGTAAATCCGCATCGACTTTCCTCCGTTCCAGTAGTG
TGTTGTGTTCAGGAAATGAGGGGTGAGAGGAAGGAAGCATCAGCACATAA
CTTCTACCGCGTCGGCTGTCTCTCGTCGTTGCCCACCCCCTTTATCCTCT
CACACGACACTGCACTCTCATTTTCCCGTTCATTATTGTTCCTCCATCCT
CGACACTATAGGACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCT
GCTCGCGACGACGTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCAC
CATCACCAACAGTAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCC
CTTCCGCCGCTCCTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGA
GATCTGACGGGTGCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTC
TGTGGGGCTCTACTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGA
ATCCTGGTGTTTCGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACT
TTAGGTGAGGATGGAGGTATAGAGAGAAGGAGGAAGGGAGGGCGGTGATC
GATCGTACTGATTCATTTGTTTTGCATAGAGATACTTTTTTCATTTTTGG
TAGGTAATTCTCGCTTTTTATTCCCTCTTCCTACCCTCCTCTTTCGCTCT
CCCTCCTTCCCTTCCTCCCTCACACCCATTTACCCTTTTCAGTGTACGTC
TCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACAAACCGAAAACGG
GTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGACGAGCTTGAAGG
AGAAATATAGAGTGTAAGTCAGACAAGAATAATCGCGAGGAAATATACGA
AATCAAAGATTGGTGATAGGGGATAAAATGCGCTTACCCTGTCTTCCTAT
TTCCCTCCCTTCCACGCTCCTTCCCTCTCCCTCGGTAGCTGGTCTATGCA
CGAAGACAAAGCCTTTAAAGGAAGACGGGTATCTGGTATTCCGACAATGA
TGGTGGTGGGAAAGGATGGGGAGGAAATGGCTCGCTTGGATGTGGGTATG
AAGGGGGTAGATGAGCTTGCTAAATGGAATTATGTGGAGTGGAAGTGGGA
ATAAAGGAGGAAGGGGGGGGGAGGTAAGATGGGGAGGAGCGAGAAGTTAT
GTTAAAAGAAAATTTC
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Coding sequence (CDS) from alignment at scaffold_34:201797..203362-

>mRNA_9510 ID=mRNA_9510|Name=jgi.p|Nanoce1779_2|606232|organism=Nannochloropsis oceanica|type=CDS|length=3324bp|location=Sequence derived from alignment at scaffold_34:201797..203362- (Nannochloropsis oceanica)
CTGGTCTATGCACGAAGACAAAGCCTTTAAAGGAAGACGGGTATCTGGTA
TTCCGACAATGATGGTGGTGGGAAAGGATGGGGAGGAAATGGCTCGCTTG
GATGTGGGTATGAAGGGGGTAGATGAGCTTGCTAAATGGAATTATGTGGA
GTGGAAGTGGGAATAATGTACGTCTCCTCTGATATGGACGCTGCTGGCCT
TACACAGCAACAAACCGAAAACGGGTGGCCATTTGCTGTCCCGCACGACA
GCCCTCTTCGGACGAGCTTGAAGGAGAAATATAGAGTGACACCCCCGCTG
AGGCCGACCTGCTCGGCGCTTCCCCTGCTCGCGACGACGTTATCCCCCCA
CCAGACTCCAGCACTGCCATTGCCACCATCACCAACAGTAGCAGCAGCAT
CACCACTGTTGCCGTCGCCCCCACCCCTTCCGCCGCTCCTGCCCTCCTTC
TTTTTCCTGCCGATGCACAGCTGCGAGATCTGACGGGTGCGCTCATTAAT
GCCAACGAAGCCTTGGCCGGCAAGTCTGTGGGGCTCTACTTCGGCGCTGG
GTGGTGTAGCATGACTCGGGCCGCGAATCCTGGTGTTTCGGCATGGATTA
CGGCGAGGGAAGCGGATGGGGTGACTTTAGATGCCTCGACTCAAAAGCCA
CAGCGGGAGCGGTGGTCTCCTCCTGTCCCACGGCAGCAGCAGCAGGAGGA
TTCTTGCCCTTAAGCTGTTTTTGCTGGGCATGGGCGGGTGCGCCTTGCTC
GCGGCCGTGTACCTTCCTGGGCGTGAGACAGGGATAGCAAGCGAGAACAT
AAGGGAAAGCAATATGCGGACATTAATGGGGCTGGTCTATGCACGAAGAC
AAAGCCTTTAAAGGAAGACGGGTATCTGGTATTCCGACAATGATGGTGGT
GGGAAAGGATGGGGAGGAAATGGCTCGCTTGGATGTGGGTATGAAGGGGG
TAGATGAGCTTGCTAAATGGAATTATGTGGAGTGGAAGTGGGAATAATGT
ACGTCTCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACAAACCGAA
AACGGGTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGACGAGCTT
GAAGGAGAAATATAGAGTGACACCCCCGCTGAGGCCGACCTGCTCGGCGC
TTCCCCTGCTCGCGACGACGTTATCCCCCCACCAGACTCCAGCACTGCCA
TTGCCACCATCACCAACAGTAGCAGCAGCATCACCACTGTTGCCGTCGCC
CCCACCCCTTCCGCCGCTCCTGCCCTCCTTCTTTTTCCTGCCGATGCACA
GCTGCGAGATCTGACGGGTGCGCTCATTAATGCCAACGAAGCCTTGGCCG
GCAAGTCTGTGGGGCTCTACTTCGGCGCTGGGTGGTGTAGCATGACTCGG
GCCGCGAATCCTGGTGTTTCGGCATGGATTACGGCGAGGGAAGCGGATGG
GGTGACTTTAGATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTC
CTCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTT
TTTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTG
GGCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGG
ACATTAATGGGGCTGGTCTATGCACGAAGACAAAGCCTTTAAAGGAAGAC
GGGTATCTGGTATTCCGACAATGATGGTGGTGGGAAAGGATGGGGAGGAA
ATGGCTCGCTTGGATGTGGGTATGAAGGGGGTAGATGAGCTTGCTAAATG
GAATTATGTGGAGTGGAAGTGGGAATAATGTACGTCTCCTCTGATATGGA
CGCTGCTGGCCTTACACAGCAACAAACCGAAAACGGGTGGCCATTTGCTG
TCCCGCACGACAGCCCTCTTCGGACGAGCTTGAAGGAGAAATATAGAGTG
ACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCTGCTCGCGACGAC
GTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCACCATCACCAACAG
TAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCCCTTCCGCCGCTC
CTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGAGATCTGACGGGT
GCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTCTGTGGGGCTCTA
CTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGAATCCTGGTGTTT
CGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACTTTAGATGCCTCG
ACTCAAAAGCCACAGCGGGAGCGGTGGTCTCCTCCTGTCCCACGGCAGCA
GCAGCAGGAGGATTCTTGCCCTTAAGCTGTTTTTGCTGGGCATGGGCGGG
TGCGCCTTGCTCGCGGCCGTGTACCTTCCTGGGCGTGAGACAGGGATAGC
AAGCGAGAACATAAGGGAAAGCAATATGCGGACATTAATGGGGCTGGTCT
ATGCACGAAGACAAAGCCTTTAAAGGAAGACGGGTATCTGGTATTCCGAC
AATGATGGTGGTGGGAAAGGATGGGGAGGAAATGGCTCGCTTGGATGTGG
GTATGAAGGGGGTAGATGAGCTTGCTAAATGGAATTATGTGGAGTGGAAG
TGGGAATAATGTACGTCTCCTCTGATATGGACGCTGCTGGCCTTACACAG
CAACAAACCGAAAACGGGTGGCCATTTGCTGTCCCGCACGACAGCCCTCT
TCGGACGAGCTTGAAGGAGAAATATAGAGTGACACCCCCGCTGAGGCCGA
CCTGCTCGGCGCTTCCCCTGCTCGCGACGACGTTATCCCCCCACCAGACT
CCAGCACTGCCATTGCCACCATCACCAACAGTAGCAGCAGCATCACCACT
GTTGCCGTCGCCCCCACCCCTTCCGCCGCTCCTGCCCTCCTTCTTTTTCC
TGCCGATGCACAGCTGCGAGATCTGACGGGTGCGCTCATTAATGCCAACG
AAGCCTTGGCCGGCAAGTCTGTGGGGCTCTACTTCGGCGCTGGGTGGTGT
AGCATGACTCGGGCCGCGAATCCTGGTGTTTCGGCATGGATTACGGCGAG
GGAAGCGGATGGGGTGACTTTAGATGCCTCGACTCAAAAGCCACAGCGGG
AGCGGTGGTCTCCTCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGC
CCTTAAGCTGTTTTTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCG
TGTACCTTCCTGGGCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAA
AGCAATATGCGGACATTAATGGGG
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Synonyms
Publications