jgi.p|Nanoce1779_2|574784, mRNA_951 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574784
Unique NamemRNA_951
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length816
Alignment locationscaffold_2:833754..834741 -

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Properties
Property NameValue
TranscriptId574870
TrackFilteredModels2
ProteinId574784
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:833754..834741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574784gene_951Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574784mRNA_951-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_951CDS_951Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_951 ID=mRNA_951|Name=jgi.p|Nanoce1779_2|574784|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
AGCGCATGGGCCAGGTCGAAGGTGGGTGAAAAAGTATGCACTGCTCGATG
ACGATGATGGTGAATTCAAAGTGGGTGTTACAAGGGGACAGCTACATAAC
TCACGCAAGGCAACATCTGCAGAGCACAAAAAGCATAGCTGCACGACGCG
CTTGTTGTTTCCCTCCTTACACTGCCGTGATCCCTTCCTTCTTCACACAG
AGCCAACACAGCCGCAGGCTGCACAATCACCCCCCTCCTTCCTCTCTTAC
ACCAGCCCATCTCCTCTCATGTCGACCACGCCTCCTCCTCCGCTTCCGTC
TCCGCCTCCGCACCCACCTAACGAGGATGAGGCAACCGAGCTTCCCTCCT
TGGTACCGGAAGCAACCCTTGCAAGAGAGCCGCCATCGTTGGCCCCGCCA
CCTCCTCCCCTTCCTCCTTCAGCTCCTCCATCCCATTATCTGCCGCAGCT
CCCTCATCCTTCCCATAATCCTGCGTCCTCGATCAATTATGTACAAGCCC
GCCCTGCAACTGCCATACCAATACCTCTGCCCCCTCTTATTATGCCGTAC
ATGGACATGGCGCATGCCGCAGCCCCTTATCCACACGTCGGCATTTCCCT
CCCACCCCCTGTCTTCATGCCTAGTGGTATGCCCTGCGCCGCCCCTCCCC
CCTTGTCGTTGCCCAAAAACCTCCCCTCCTTACAAAACGGCCAAGTACGC
AACACACTAGCATCGAGTAATAACACGCTTGCAGCAGTCGCGGCCGTCGC
TGGACCCATCTCGATCACCACTGCTTCAGTCGGAGCAGGAGCAGGAGCAG
GAGCAGGAGCAGAAGC
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protein sequence of jgi.p|Nanoce1779_2|574784

>mRNA_951-protein ID=mRNA_951-protein|Name=jgi.p|Nanoce1779_2|574784|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MHCSMTMMVNSKWVLQGDSYITHARQHLQSTKSIAARRACCFPPYTAVIP
SFFTQSQHSRRLHNHPPPSSLTPAHLLSCRPRLLLRFRLRLRTHLTRMRQ
PSFPPWYRKQPLQESRHRWPRHLLPFLLQLLHPIICRSSLILPIILRPRS
IMYKPALQLPYQYLCPLLLCRTWTWRMPQPLIHTSAFPSHPLSSCLVVCP
APPLPPCRCPKTSPPYKTAKYATH*
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mRNA from alignment at scaffold_2:833754..834741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_951 ID=mRNA_951|Name=jgi.p|Nanoce1779_2|574784|organism=Nannochloropsis oceanica|type=mRNA|length=988bp|location=Sequence derived from alignment at scaffold_2:833754..834741- (Nannochloropsis oceanica)
AGCGCATGGGCCAGGTCGAAGGTGGGTGAAAAAGTATGCACTGCTCGATG
ACGATGATGGTGAATTCAAAGTGGGTGTTACAAGGGGACAGCTACATAAC
TCACGCAAGGCAACATCTGCAGAGCACAAAAAGCATAGCTGCACGACGCG
CTTGTTGTTTCCCTCCTTACACTGCCGTGATCCCTTCCTTCTTCACACAG
AGCCAACACAGCCGCAGGCTGCACAATCACCCCCCTCCTTCCTCTCTTAC
ACCAGCCCATCTCCTCTCATGTCGACCACGCCTCCTCCTCCGCTTCCGTC
TCCGCCTCCGCACCCACCTAACGAGGATGAGGCAACCGAGCTTCCCTCCT
TGGTACCGGAAGCAACCCTTGCAAGAGAGCCGCCATCGTTGGCCCCGCCA
CCTCCTCCCCTTCCTCCTTCAGCTCCTCCATCCCATTATCTGCCGCAGCT
CCCTCATCCTTCCCATAATCCTGCGTCCTCGATCAATTATGTACAAGCCC
GCCCTGCAACTGCCATACCAATACCTCTGCCCCCTCTTATTATGCCGTAC
ATGGACATGGCGCATGCCGGTAAGTTTTCCTGCCTTCGGTGATATACTAG
GTCTCGATTCCCATAAATTCAAAACCCTCCATGACAACCTTTCTTCATCC
GTTAATGCAGCCTTGCCTCTTTTATATCCCCATCCCCTGCCATCACGGAC
CAACCAAACCTTTCATTTCTCCACACATCCCACAAACATAGCAGCCCCTT
ATCCACACGTCGGCATTTCCCTCCCACCCCCTGTCTTCATGCCTAGTGGT
ATGCCCTGCGCCGCCCCTCCCCCCTTGTCGTTGCCCAAAAACCTCCCCTC
CTTACAAAACGGCCAAGTACGCAACACACTAGCATCGAGTAATAACACGC
TTGCAGCAGTCGCGGCCGTCGCTGGACCCATCTCGATCACCACTGCTTCA
GTCGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGC
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Coding sequence (CDS) from alignment at scaffold_2:833754..834741-

>mRNA_951 ID=mRNA_951|Name=jgi.p|Nanoce1779_2|574784|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_2:833754..834741- (Nannochloropsis oceanica)
CAGCCCCTTATCCACACGTCGGCATTTCCCTCCCACCCCCTGTCTTCATG
CCTAGTGGTATGCCCTGCGCCGCCCCTCCCCCCTTGTCGTTGCCCAAAAA
CCTCCCCTCCTTACAAAACGGCCAAGTACGCAACACACTAGATGCACTGC
TCGATGACGATGATGGTGAATTCAAAGTGGGTGTTACAAGGGGACAGCTA
CATAACTCACGCAAGGCAACATCTGCAGAGCACAAAAAGCATAGCTGCAC
GACGCGCTTGTTGTTTCCCTCCTTACACTGCCGTGATCCCTTCCTTCTTC
ACACAGAGCCAACACAGCCGCAGGCTGCACAATCACCCCCCTCCTTCCTC
TCTTACACCAGCCCATCTCCTCTCATGTCGACCACGCCTCCTCCTCCGCT
TCCGTCTCCGCCTCCGCACCCACCTAACGAGGATGAGGCAACCGAGCTTC
CCTCCTTGGTACCGGAAGCAACCCTTGCAAGAGAGCCGCCATCGTTGGCC
CCGCCACCTCCTCCCCTTCCTCCTTCAGCTCCTCCATCCCATTATCTGCC
GCAGCTCCCTCATCCTTCCCATAATCCTGCGTCCTCGATCAATTATGTAC
AAGCCCGCCCTGCAACTGCCATACCAATACCTCTGCCCCCTCTTATTATG
CCGTACATGGACATGGCGCATGCCGCAGCCCCTTATCCACACGTCGGCAT
TTCCCTCCCACCCCCTGTCTTCATGCCTAGTGGTATGCCCTGCGCCGCCC
CTCCCCCCTTGTCGTTGCCCAAAAACCTCCCCTCCTTACAAAACGGCCAA
GTACGCAACACACTAGATGCACTGCTCGATGACGATGATGGTGAATTCAA
AGTGGGTGTTACAAGGGGACAGCTACATAACTCACGCAAGGCAACATCTG
CAGAGCACAAAAAGCATAGCTGCACGACGCGCTTGTTGTTTCCCTCCTTA
CACTGCCGTGATCCCTTCCTTCTTCACACAGAGCCAACACAGCCGCAGGC
TGCACAATCACCCCCCTCCTTCCTCTCTTACACCAGCCCATCTCCTCTCA
TGTCGACCACGCCTCCTCCTCCGCTTCCGTCTCCGCCTCCGCACCCACCT
AACGAGGATGAGGCAACCGAGCTTCCCTCCTTGGTACCGGAAGCAACCCT
TGCAAGAGAGCCGCCATCGTTGGCCCCGCCACCTCCTCCCCTTCCTCCTT
CAGCTCCTCCATCCCATTATCTGCCGCAGCTCCCTCATCCTTCCCATAAT
CCTGCGTCCTCGATCAATTATGTACAAGCCCGCCCTGCAACTGCCATACC
AATACCTCTGCCCCCTCTTATTATGCCGTACATGGACATGGCGCATGCCG
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Synonyms
Publications