jgi.p|Nanoce1779_2|606231, mRNA_9509 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606231
Unique Name	mRNA_9509
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2759
Alignment location	scaffold_34:198516..201274 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606317
Track	FilteredModels2
ProteinId	606231

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:198516..201274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606231	gene_9509	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606231	mRNA_9509-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9509	CDS_9509	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:198516..201274+
coding sequence from alignment at scaffold_34:198516..201274+

mRNA sequence

>mRNA_9509 ID=mRNA_9509|Name=jgi.p|Nanoce1779_2|606231|organism=Nannochloropsis oceanica|type=mRNA|length=2759bp
GGAGAAGGCAGAGCAGGAGGAAGGGGCTGGCGCTATCTCTTCCACGGAGG
AGGGCGAGGGCAGCAGCAGCAGCAGCAGCAGTAGCAACAACAACAGGAAC
AACAACAACGGTCCTCCTTCTGTCTTGATGACAACTGTGGACGAAGTGAA
CAGCACGGCTGACTCTATGTACGGGCTCGCAGAAGCTGTTAATCGCTCCA
CTCTCGCCCGTGTCGCTGAGAGCAAGGTAGAACGCGAGCTTAAGGCATCC
CTCAAATTGGGGAAGGCTGACGATGTGACGTTACCATGGGGAAAGACGCT
CTTAGCCAAGCCCTTGATTCGTTTAAATGCCGCGATGCTGCCACCAAGAC
TAGCGGAGATGGTGGGTTGTACTAAGAGGGCGTCGGGCGCGGATTCGGCT
ACGGTGCTTGACGGGTTGGTCGCATGGATTGACAAGGCAGTGGGGAAGGA
GGAAGGAGAGAAAAAGAGAGAGGTCAGAGATGGAGAAAAGATGATGAACC
CTGCTACCATTGAGGAGGTAGAGGAGGAAGAGGAGCAGGTGATGGTAGAG
GAAGGGGTAAAAGAGGAGGGGGGGAGGAAGGAGGGTGAGAGAATGGAGAA
TGTCACGGGTGCCGGTGACTTGAAGGGAGAAGTTGGCACCACTTTTCCCA
CCTTTACTAGCGTGAAGCAAAACGAGGATAACGCTGCTTCTACCGTGGAC
AAGAGCCGAGCCTTTCACCTTGTGTGTGCCTTGAAGACCAACTCCTCCCC
CACAACATTTGACGGCATGAAAGTCGTTCACCAAATCCGGTTGTATCAGC
TCCACTACCTCGCACAAGGCATCGGTTTCGTCGGCCCCTCCGCCACCCCC
ACCTTTTCCGCGGACTTTATCTCGCAGCGCATCCTGAGCGGGGGCGATGG
TGGCCCAGGTGCTCACGGGGGCAACCCTCTTTTGATGGGGAAAAACCAGC
AGCTCTTCCCGGGCTTAACATCTGTCACCCAGTCACGGTTGGCGGCCTAT
GTCTCACATGCAGGTAATAACGGCAGCAGAAGAGAGGCACCGATGTCGCC
TGGGCGGATAGGGCGTCATTTTGAGCGGCATGGTGGACCCCCAGGCGGTG
GAAATGGCCACACTCATGCTGCCGCGGCATCAGCAGTCATGTCGGGCTTA
TCGGAGGCTTTTGCGGGCCGTGGAGGCGGGGGGGGGATGTCCCATTCCTC
TATTGCTCCAAACATGGGTGGACGTGCTCGGCTTTCGGCAAAGGACTCGA
CACTGGCGTTGGGCCACGGGCGTCCACACCCTCACCATGCCCATCCGCAC
GCACCCGCAGCCTTGAAGACGCTGCAGGAAGAGTGTTGGGCGCTGCGGCG
ACGGAACGAAGAGCTTGGGGCTATGAATACAGAGCTGCTACAGTTGGTTG
TGGGCGAGAAGCACGAGGTTTTTTCCTCGCCCAACACAGTGGGAGCAGGG
AAGCGCGCTGGAGCTCTGACTAGCCCTCAAACCCAGGCTCAAGTCTCACA
GTTGTCTACATTGATCCACGAGACGGTCGAGAAGTTCACGAAGGTAATTT
GGGATACCTTTGGCTTTGACGTGCGAAAGGAGGGCGTGGCGAGCCTGCGT
CGATTGCGCGCAGAGATCGTGAGCCACTTGGACACTCTCATTGCCCAGGA
GGACATTTTGGAGAACGTGAAGAGTGGTTTTGGGAGTGGAGGCGTCAGTG
GCAGCATCGGTGGCATCGGTACCCTTGGCGGGGCGCCGGGGATGGGACCA
GGAGAATTGCCTCATCTACCGGCGATGCCTCCTCTTCAGCACCACCGAGA
CGCTGGTGTATCCGGACATCACCACGGAGGTCATCACAACCAATATCACA
ACAACAACAACCACCACAAGGCCTATCAGCATCAGCAGCATCAGCTTCAA
CAGGAGCAATACCCGTATTCGCACTCTCTTCATCACAACGCCCACCACCA
CGTACCCCCTCACCACCTTGCTGCACCAAACCATCATCACAAGCAACACC
ATCACCATACCTCACCTTTCTCCTTGCCGAACGGAGAGGACATGTTTTAC
TGAACAAATTATGAAACGTTACAGTAGAAAATGTGAAATATTTACATTAT
ATGAAACGGCATGTCTGAATTTAGCTTTCGTGCGGCGCATACATTCCCAT
TTCGGGCGAAGTACTTAATTGTAGTGTCATTATGAAGAGGAGCGGAGGGA
TTCTGTTCTTCTGGGAAAAAAAGCATTTTAATTTAATTCACAACCGATCG
GAATTGATTTTCCCTGCAGATCATTTAATTCTGTAGGAGTGTGTGAGCAT
CTGCAACAGTAGCAAATCTAGAGAGAAATAAGGGGACAAAGAGACGAAGA
TAATAAAGGTCCTGATTTTCAGCCTGGTACCGAACGACATGTGTCTGTAC
GTTGAGTAGTCTTTACAGCAATGGGGCTCCGCTGCTGGAAAGACTAAAAA
CAAACGATTTCAACATGATATCAGGAGAAGAATTCAAAGATTAGGAATCG
GATGTCCTGAGTTGTAACAAATTTAATATTTATAGTAAATAGCCTGGATG
AGCCACCCTACTCTCAATAGCTTACCGAGCCAGTGTGGAGCACAAAAGGC
GATCAGATCATCAGGTATTGGGGCTACGACTTAACAGCAATCTCAACAGT
ACTAACGGTGGGGAAGAGGCAGAATGCCTCTTTTTGCATTAAATTCTGCC
ACCTTTATGTTGGGAAAGAAAAAAGGAGGACCCACATGATAAAAGATTTG
CGTGTTCGT

protein sequence of jgi.p|Nanoce1779_2|606231

>mRNA_9509-protein ID=mRNA_9509-protein|Name=jgi.p|Nanoce1779_2|606231|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MTTVDEVNSTADSMYGLAEAVNRSTLARVAESKVERELKASLKLGKADDV
TLPWGKTLLAKPLIRLNAAMLPPRLAEMVGCTKRASGADSATVLDGLVAW
IDKAVGKEEGEKKREVRDGEKMMNPATIEEVEEEEEQVMVEEGVKEEGGR
KEGERMENVTGAGDLKGEVGTTFPTFTSVKQNEDNAASTVDKSRAFHLVC
ALKTNSSPTTFDGMKVVHQIRLYQLHYLAQGIGFVGPSATPTFSADFISQ
RILSGGDGGPGAHGGNPLLMGKNQQLFPGLTSVTQSRLAAYVSHAGNNGS
RREAPMSPGRIGRHFERHGGPPGGGNGHTHAAAASAVMSGLSEAFAGRGG
GGGMSHSSIAPNMGGRARLSAKDSTLALGHGRPHPHHAHPHAPAALKTLQ
EECWALRRRNEELGAMNTELLQLVVGEKHEVFSSPNTVGAGKRAGALTSP
QTQAQVSQLSTLIHETVEKFTKVIWDTFGFDVRKEGVASLRRLRAEIVSH
LDTLIAQEDILENVKSGFGSGGVSGSIGGIGTLGGAPGMGPGELPHLPAM
PPLQHHRDAGVSGHHHGGHHNQYHNNNNHHKAYQHQQHQLQQEQYPYSHS
LHHNAHHHVPPHHLAAPNHHHKQHHHHTSPFSLPNGEDMFY*

mRNA from alignment at scaffold_34:198516..201274+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9509 ID=mRNA_9509|Name=jgi.p|Nanoce1779_2|606231|organism=Nannochloropsis oceanica|type=mRNA|length=2759bp|location=Sequence derived from alignment at scaffold_34:198516..201274+ (Nannochloropsis oceanica)
GGAGAAGGCAGAGCAGGAGGAAGGGGCTGGCGCTATCTCTTCCACGGAGG
AGGGCGAGGGCAGCAGCAGCAGCAGCAGCAGTAGCAACAACAACAGGAAC
AACAACAACGGTCCTCCTTCTGTCTTGATGACAACTGTGGACGAAGTGAA
CAGCACGGCTGACTCTATGTACGGGCTCGCAGAAGCTGTTAATCGCTCCA
CTCTCGCCCGTGTCGCTGAGAGCAAGGTAGAACGCGAGCTTAAGGCATCC
CTCAAATTGGGGAAGGCTGACGATGTGACGTTACCATGGGGAAAGACGCT
CTTAGCCAAGCCCTTGATTCGTTTAAATGCCGCGATGCTGCCACCAAGAC
TAGCGGAGATGGTGGGTTGTACTAAGAGGGCGTCGGGCGCGGATTCGGCT
ACGGTGCTTGACGGGTTGGTCGCATGGATTGACAAGGCAGTGGGGAAGGA
GGAAGGAGAGAAAAAGAGAGAGGTCAGAGATGGAGAAAAGATGATGAACC
CTGCTACCATTGAGGAGGTAGAGGAGGAAGAGGAGCAGGTGATGGTAGAG
GAAGGGGTAAAAGAGGAGGGGGGGAGGAAGGAGGGTGAGAGAATGGAGAA
TGTCACGGGTGCCGGTGACTTGAAGGGAGAAGTTGGCACCACTTTTCCCA
CCTTTACTAGCGTGAAGCAAAACGAGGATAACGCTGCTTCTACCGTGGAC
AAGAGCCGAGCCTTTCACCTTGTGTGTGCCTTGAAGACCAACTCCTCCCC
CACAACATTTGACGGCATGAAAGTCGTTCACCAAATCCGGTTGTATCAGC
TCCACTACCTCGCACAAGGCATCGGTTTCGTCGGCCCCTCCGCCACCCCC
ACCTTTTCCGCGGACTTTATCTCGCAGCGCATCCTGAGCGGGGGCGATGG
TGGCCCAGGTGCTCACGGGGGCAACCCTCTTTTGATGGGGAAAAACCAGC
AGCTCTTCCCGGGCTTAACATCTGTCACCCAGTCACGGTTGGCGGCCTAT
GTCTCACATGCAGGTAATAACGGCAGCAGAAGAGAGGCACCGATGTCGCC
TGGGCGGATAGGGCGTCATTTTGAGCGGCATGGTGGACCCCCAGGCGGTG
GAAATGGCCACACTCATGCTGCCGCGGCATCAGCAGTCATGTCGGGCTTA
TCGGAGGCTTTTGCGGGCCGTGGAGGCGGGGGGGGGATGTCCCATTCCTC
TATTGCTCCAAACATGGGTGGACGTGCTCGGCTTTCGGCAAAGGACTCGA
CACTGGCGTTGGGCCACGGGCGTCCACACCCTCACCATGCCCATCCGCAC
GCACCCGCAGCCTTGAAGACGCTGCAGGAAGAGTGTTGGGCGCTGCGGCG
ACGGAACGAAGAGCTTGGGGCTATGAATACAGAGCTGCTACAGTTGGTTG
TGGGCGAGAAGCACGAGGTTTTTTCCTCGCCCAACACAGTGGGAGCAGGG
AAGCGCGCTGGAGCTCTGACTAGCCCTCAAACCCAGGCTCAAGTCTCACA
GTTGTCTACATTGATCCACGAGACGGTCGAGAAGTTCACGAAGGTAATTT
GGGATACCTTTGGCTTTGACGTGCGAAAGGAGGGCGTGGCGAGCCTGCGT
CGATTGCGCGCAGAGATCGTGAGCCACTTGGACACTCTCATTGCCCAGGA
GGACATTTTGGAGAACGTGAAGAGTGGTTTTGGGAGTGGAGGCGTCAGTG
GCAGCATCGGTGGCATCGGTACCCTTGGCGGGGCGCCGGGGATGGGACCA
GGAGAATTGCCTCATCTACCGGCGATGCCTCCTCTTCAGCACCACCGAGA
CGCTGGTGTATCCGGACATCACCACGGAGGTCATCACAACCAATATCACA
ACAACAACAACCACCACAAGGCCTATCAGCATCAGCAGCATCAGCTTCAA
CAGGAGCAATACCCGTATTCGCACTCTCTTCATCACAACGCCCACCACCA
CGTACCCCCTCACCACCTTGCTGCACCAAACCATCATCACAAGCAACACC
ATCACCATACCTCACCTTTCTCCTTGCCGAACGGAGAGGACATGTTTTAC
TGAACAAATTATGAAACGTTACAGTAGAAAATGTGAAATATTTACATTAT
ATGAAACGGCATGTCTGAATTTAGCTTTCGTGCGGCGCATACATTCCCAT
TTCGGGCGAAGTACTTAATTGTAGTGTCATTATGAAGAGGAGCGGAGGGA
TTCTGTTCTTCTGGGAAAAAAAGCATTTTAATTTAATTCACAACCGATCG
GAATTGATTTTCCCTGCAGATCATTTAATTCTGTAGGAGTGTGTGAGCAT
CTGCAACAGTAGCAAATCTAGAGAGAAATAAGGGGACAAAGAGACGAAGA
TAATAAAGGTCCTGATTTTCAGCCTGGTACCGAACGACATGTGTCTGTAC
GTTGAGTAGTCTTTACAGCAATGGGGCTCCGCTGCTGGAAAGACTAAAAA
CAAACGATTTCAACATGATATCAGGAGAAGAATTCAAAGATTAGGAATCG
GATGTCCTGAGTTGTAACAAATTTAATATTTATAGTAAATAGCCTGGATG
AGCCACCCTACTCTCAATAGCTTACCGAGCCAGTGTGGAGCACAAAAGGC
GATCAGATCATCAGGTATTGGGGCTACGACTTAACAGCAATCTCAACAGT
ACTAACGGTGGGGAAGAGGCAGAATGCCTCTTTTTGCATTAAATTCTGCC
ACCTTTATGTTGGGAAAGAAAAAAGGAGGACCCACATGATAAAAGATTTG
CGTGTTCGT

Coding sequence (CDS) from alignment at scaffold_34:198516..201274+

>mRNA_9509 ID=mRNA_9509|Name=jgi.p|Nanoce1779_2|606231|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_34:198516..201274+ (Nannochloropsis oceanica)
ATGACAACTGTGGACGAAGTGAACAGCACGGCTGACTCTATGTACGGGCT
CGCAGAAGCTGTTAATCGCTCCACTCTCGCCCGTGTCGCTGAGAGCAAGG
TAGAACGCGAGCTTAAGGCATCCCTCAAATTGGGGAAGGCTGACGATGTG
ACGTTACCATGGGGAAAGACGCTCTTAGCCAAGCCCTTGATTCGTTTAAA
TGCCGCGATGCTGCCACCAAGACTAGCGGAGATGGTGGGTTGTACTAAGA
GGGCGTCGGGCGCGGATTCGGCTACGGTGCTTGACGGGTTGGTCGCATGG
ATTGACAAGGCAGTGGGGAAGGAGGAAGGAGAGAAAAAGAGAGAGGTCAG
AGATGGAGAAAAGATGATGAACCCTGCTACCATTGAGGAGGTAGAGGAGG
AAGAGGAGCAGGTGATGGTAGAGGAAGGGGTAAAAGAGGAGGGGGGGAGG
AAGGAGGGTGAGAGAATGGAGAATGTCACGGGTGCCGGTGACTTGAAGGG
AGAAGTTGGCACCACTTTTCCCACCTTTACTAGCGTGAAGCAAAACGAGG
ATAACGCTGCTTCTACCGTGGACAAGAGCCGAGCCTTTCACCTTGTGTGT
GCCTTGAAGACCAACTCCTCCCCCACAACATTTGACGGCATGAAAGTCGT
TCACCAAATCCGGTTGTATCAGCTCCACTACCTCGCACAAGGCATCGGTT
TCGTCGGCCCCTCCGCCACCCCCACCTTTTCCGCGGACTTTATCTCGCAG
CGCATCCTGAGCGGGGGCGATGGTGGCCCAGGTGCTCACGGGGGCAACCC
TCTTTTGATGGGGAAAAACCAGCAGCTCTTCCCGGGCTTAACATCTGTCA
CCCAGTCACGGTTGGCGGCCTATGTCTCACATGCAGGTAATAACGGCAGC
AGAAGAGAGGCACCGATGTCGCCTGGGCGGATAGGGCGTCATTTTGAGCG
GCATGGTGGACCCCCAGGCGGTGGAAATGGCCACACTCATGCTGCCGCGG
CATCAGCAGTCATGTCGGGCTTATCGGAGGCTTTTGCGGGCCGTGGAGGC
GGGGGGGGGATGTCCCATTCCTCTATTGCTCCAAACATGGGTGGACGTGC
TCGGCTTTCGGCAAAGGACTCGACACTGGCGTTGGGCCACGGGCGTCCAC
ACCCTCACCATGCCCATCCGCACGCACCCGCAGCCTTGAAGACGCTGCAG
GAAGAGTGTTGGGCGCTGCGGCGACGGAACGAAGAGCTTGGGGCTATGAA
TACAGAGCTGCTACAGTTGGTTGTGGGCGAGAAGCACGAGGTTTTTTCCT
CGCCCAACACAGTGGGAGCAGGGAAGCGCGCTGGAGCTCTGACTAGCCCT
CAAACCCAGGCTCAAGTCTCACAGTTGTCTACATTGATCCACGAGACGGT
CGAGAAGTTCACGAAGGTAATTTGGGATACCTTTGGCTTTGACGTGCGAA
AGGAGGGCGTGGCGAGCCTGCGTCGATTGCGCGCAGAGATCGTGAGCCAC
TTGGACACTCTCATTGCCCAGGAGGACATTTTGGAGAACGTGAAGAGTGG
TTTTGGGAGTGGAGGCGTCAGTGGCAGCATCGGTGGCATCGGTACCCTTG
GCGGGGCGCCGGGGATGGGACCAGGAGAATTGCCTCATCTACCGGCGATG
CCTCCTCTTCAGCACCACCGAGACGCTGGTGTATCCGGACATCACCACGG
AGGTCATCACAACCAATATCACAACAACAACAACCACCACAAGGCCTATC
AGCATCAGCAGCATCAGCTTCAACAGGAGCAATACCCGTATTCGCACTCT
CTTCATCACAACGCCCACCACCACGTACCCCCTCACCACCTTGCTGCACC
AAACCATCATCACAAGCAACACCATCACCATACCTCACCTTTCTCCTTGC
CGAACGGAGAGGACATGTTTTACTGA

Synonyms

Publications