jgi.p|Nanoce1779_2|560250, mRNA_9506 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560250
Unique Name	mRNA_9506
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1527
Alignment location	scaffold_34:187712..189238 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	560336
Track	FilteredModels2
ProteinId	560250

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:187712..189238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560250	gene_9506	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560250	mRNA_9506-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9506	CDS_9506	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:187712..189238+
coding sequence from alignment at scaffold_34:187712..189238+

mRNA sequence

>mRNA_9506 ID=mRNA_9506|Name=jgi.p|Nanoce1779_2|560250|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
ATGCACGGCGAGGAAGACGATGAGTCTTTCTTGGGAGCAGCAGCTCTAAA
GGGCGACCCGGAGGAGGAGGAGGAGGTGGATGATGAGGGGGATTTTGGTG
ACGTGCTGGGTGATATCGATGATGAAGAGGAGGAGCAGGAGGAGGATCAG
GAGGAGGAGAAAGGAGAAAGAGAGGCTGAGGATGAAGACAGTCACGAGGA
ACAGGATGATAATGATGAGGAGGAGGAATTTGAGGGAAGGGAGGAGGGGG
AGGACGACGAGGAGGATGGAAATCTGGGGGAGGAAGGCACAGAGGATCAA
GATGAAAATGACTACCCCTCCTCCGGTTCCTCCTCCTCTTCCTCCTCCTC
CGAGGAGCTTGAGCTTACCGTGGACGATGAAGGTCGCCTCGCTTTCAATG
GCGGCTACGTCAATTACTCCCTCCGCTCCTTTCCTTGCGCCTTCCCCTCC
CTCGCTTCCTCCTCCTCCCCCTCCCCTCTCCTCTCCACCTTACTCCACGA
CTGTCACCTTGCCAGCACGGCACGTGCTCAAGCCCGGGCAGGAGGGGAGT
ATAGCGAGGGGGAGACCTTTTTTATCACTGCAGTTACAACGCCCACAGCG
CAATTGGAGGCCATTGCCCTGTCCATATTTAAGTTCCACAGTCAGCACGC
AGTGTTCGACGGGGCGAGGAGTGGGGCGGAATGGTGGGTGCAGGTCTTGG
ACGAGGACGACGACATTGGCATGCACTTCGACAAGGACTACTCGCTCGAA
GCCCATCTTCTCAACATCCACCCGCACCTGGCCACAGTCACCTACCTCTC
CCCATTTGGGGGTCCCACCCTTATCCTTCCCCTCCCTTGCCCCTTGCGTC
ACGGCGAGGATCTTTCTTGCATTTTGCCCTGGGCTGGCTTGTCGTTACCG
GACGTTGGGAAACACACAGTCTTTGACGGCCGCCTCCTGCACGCCGCCCC
TGCAGAACTACGGGGCCTCTGGAAACCGCAGAGGGAAGAGGAGGAGGAAG
GGAAGGAGGAAGGGAGAGCGGTCTCGAGGGAGCGGGTCACCCTGCTCGTG
AACGTGTGGTTGAATCACATCCCAAACTCAGCTGAACGACCAAGCGCTCC
TCTCATGGCCGCCCTCTCTCCCTACTGCCCTTCCAGTCCCCTTCCCTGCT
CCCTTGGATCCCTCCCTCCCTCCCTCGCGTCCTCAGGAGGGAAATTCGGC
GCTCTTCCCCCGTCCTCCCTCCCCTCCTCCTCCTCCCCCTCCTCCTCTTA
TTTCTCCTCCTCGCCTGTGGCTTCGCGCGTGACAGATGTGAGGGTGGGAG
GAGGGGTGGAAAGCCCCAAGCTGGCATCCTGGGTGTTGGGGGGGGAGGCG
GGTCAGAAGTATAGGGTGATGGTGCCACTGCCGGCGGGGGAGGGAGGGCA
GGTCGGGAGGGGGGAAAGGGAGGAGGGAACCACAATACGGTTGGTTTTTG
GCGGAGGATTGGAGGGAGAGGTGGTGAGGGAAGGCAAGAGGAAGAGGGAA
GAGGGGGGGGGGGGGGGAGGGGAGTGA

protein sequence of jgi.p|Nanoce1779_2|560250

>mRNA_9506-protein ID=mRNA_9506-protein|Name=jgi.p|Nanoce1779_2|560250|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MHGEEDDESFLGAAALKGDPEEEEEVDDEGDFGDVLGDIDDEEEEQEEDQ
EEEKGEREAEDEDSHEEQDDNDEEEEFEGREEGEDDEEDGNLGEEGTEDQ
DENDYPSSGSSSSSSSSEELELTVDDEGRLAFNGGYVNYSLRSFPCAFPS
LASSSSPSPLLSTLLHDCHLASTARAQARAGGEYSEGETFFITAVTTPTA
QLEAIALSIFKFHSQHAVFDGARSGAEWWVQVLDEDDDIGMHFDKDYSLE
AHLLNIHPHLATVTYLSPFGGPTLILPLPCPLRHGEDLSCILPWAGLSLP
DVGKHTVFDGRLLHAAPAELRGLWKPQREEEEEGKEEGRAVSRERVTLLV
NVWLNHIPNSAERPSAPLMAALSPYCPSSPLPCSLGSLPPSLASSGGKFG
ALPPSSLPSSSSPSSSYFSSSPVASRVTDVRVGGGVESPKLASWVLGGEA
GQKYRVMVPLPAGEGGQVGRGEREEGTTIRLVFGGGLEGEVVREGKRKRE
EGGGGGGE*

mRNA from alignment at scaffold_34:187712..189238+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9506 ID=mRNA_9506|Name=jgi.p|Nanoce1779_2|560250|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at scaffold_34:187712..189238+ (Nannochloropsis oceanica)
ATGCACGGCGAGGAAGACGATGAGTCTTTCTTGGGAGCAGCAGCTCTAAA
GGGCGACCCGGAGGAGGAGGAGGAGGTGGATGATGAGGGGGATTTTGGTG
ACGTGCTGGGTGATATCGATGATGAAGAGGAGGAGCAGGAGGAGGATCAG
GAGGAGGAGAAAGGAGAAAGAGAGGCTGAGGATGAAGACAGTCACGAGGA
ACAGGATGATAATGATGAGGAGGAGGAATTTGAGGGAAGGGAGGAGGGGG
AGGACGACGAGGAGGATGGAAATCTGGGGGAGGAAGGCACAGAGGATCAA
GATGAAAATGACTACCCCTCCTCCGGTTCCTCCTCCTCTTCCTCCTCCTC
CGAGGAGCTTGAGCTTACCGTGGACGATGAAGGTCGCCTCGCTTTCAATG
GCGGCTACGTCAATTACTCCCTCCGCTCCTTTCCTTGCGCCTTCCCCTCC
CTCGCTTCCTCCTCCTCCCCCTCCCCTCTCCTCTCCACCTTACTCCACGA
CTGTCACCTTGCCAGCACGGCACGTGCTCAAGCCCGGGCAGGAGGGGAGT
ATAGCGAGGGGGAGACCTTTTTTATCACTGCAGTTACAACGCCCACAGCG
CAATTGGAGGCCATTGCCCTGTCCATATTTAAGTTCCACAGTCAGCACGC
AGTGTTCGACGGGGCGAGGAGTGGGGCGGAATGGTGGGTGCAGGTCTTGG
ACGAGGACGACGACATTGGCATGCACTTCGACAAGGACTACTCGCTCGAA
GCCCATCTTCTCAACATCCACCCGCACCTGGCCACAGTCACCTACCTCTC
CCCATTTGGGGGTCCCACCCTTATCCTTCCCCTCCCTTGCCCCTTGCGTC
ACGGCGAGGATCTTTCTTGCATTTTGCCCTGGGCTGGCTTGTCGTTACCG
GACGTTGGGAAACACACAGTCTTTGACGGCCGCCTCCTGCACGCCGCCCC
TGCAGAACTACGGGGCCTCTGGAAACCGCAGAGGGAAGAGGAGGAGGAAG
GGAAGGAGGAAGGGAGAGCGGTCTCGAGGGAGCGGGTCACCCTGCTCGTG
AACGTGTGGTTGAATCACATCCCAAACTCAGCTGAACGACCAAGCGCTCC
TCTCATGGCCGCCCTCTCTCCCTACTGCCCTTCCAGTCCCCTTCCCTGCT
CCCTTGGATCCCTCCCTCCCTCCCTCGCGTCCTCAGGAGGGAAATTCGGC
GCTCTTCCCCCGTCCTCCCTCCCCTCCTCCTCCTCCCCCTCCTCCTCTTA
TTTCTCCTCCTCGCCTGTGGCTTCGCGCGTGACAGATGTGAGGGTGGGAG
GAGGGGTGGAAAGCCCCAAGCTGGCATCCTGGGTGTTGGGGGGGGAGGCG
GGTCAGAAGTATAGGGTGATGGTGCCACTGCCGGCGGGGGAGGGAGGGCA
GGTCGGGAGGGGGGAAAGGGAGGAGGGAACCACAATACGGTTGGTTTTTG
GCGGAGGATTGGAGGGAGAGGTGGTGAGGGAAGGCAAGAGGAAGAGGGAA
GAGGGGGGGGGGGGGGGAGGGGAGTGA

Coding sequence (CDS) from alignment at scaffold_34:187712..189238+

>mRNA_9506 ID=mRNA_9506|Name=jgi.p|Nanoce1779_2|560250|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at scaffold_34:187712..189238+ (Nannochloropsis oceanica)
ATGCACGGCGAGGAAGACGATGAGTCTTTCTTGGGAGCAGCAGCTCTAAA
GGGCGACCCGGAGGAGGAGGAGGAGGTGGATGATGAGGGGGATTTTGGTG
ACGTGCTGGGTGATATCGATGATGAAGAGGAGGAGCAGGAGGAGGATCAG
GAGGAGGAGAAAGGAGAAAGAGAGGCTGAGGATGAAGACAGTCACGAGGA
ACAGGATGATAATGATGAGGAGGAGGAATTTGAGGGAAGGGAGGAGGGGG
AGGACGACGAGGAGGATGGAAATCTGGGGGAGGAAGGCACAGAGGATCAA
GATGAAAATGACTACCCCTCCTCCGGTTCCTCCTCCTCTTCCTCCTCCTC
CGAGGAGCTTGAGCTTACCGTGGACGATGAAGGTCGCCTCGCTTTCAATG
GCGGCTACGTCAATTACTCCCTCCGCTCCTTTCCTTGCGCCTTCCCCTCC
CTCGCTTCCTCCTCCTCCCCCTCCCCTCTCCTCTCCACCTTACTCCACGA
CTGTCACCTTGCCAGCACGGCACGTGCTCAAGCCCGGGCAGGAGGGGAGT
ATAGCGAGGGGGAGACCTTTTTTATCACTGCAGTTACAACGCCCACAGCG
CAATTGGAGGCCATTGCCCTGTCCATATTTAAGTTCCACAGTCAGCACGC
AGTGTTCGACGGGGCGAGGAGTGGGGCGGAATGGTGGGTGCAGGTCTTGG
ACGAGGACGACGACATTGGCATGCACTTCGACAAGGACTACTCGCTCGAA
GCCCATCTTCTCAACATCCACCCGCACCTGGCCACAGTCACCTACCTCTC
CCCATTTGGGGGTCCCACCCTTATCCTTCCCCTCCCTTGCCCCTTGCGTC
ACGGCGAGGATCTTTCTTGCATTTTGCCCTGGGCTGGCTTGTCGTTACCG
GACGTTGGGAAACACACAGTCTTTGACGGCCGCCTCCTGCACGCCGCCCC
TGCAGAACTACGGGGCCTCTGGAAACCGCAGAGGGAAGAGGAGGAGGAAG
GGAAGGAGGAAGGGAGAGCGGTCTCGAGGGAGCGGGTCACCCTGCTCGTG
AACGTGTGGTTGAATCACATCCCAAACTCAGCTGAACGACCAAGCGCTCC
TCTCATGGCCGCCCTCTCTCCCTACTGCCCTTCCAGTCCCCTTCCCTGCT
CCCTTGGATCCCTCCCTCCCTCCCTCGCGTCCTCAGGAGGGAAATTCGGC
GCTCTTCCCCCGTCCTCCCTCCCCTCCTCCTCCTCCCCCTCCTCCTCTTA
TTTCTCCTCCTCGCCTGTGGCTTCGCGCGTGACAGATGTGAGGGTGGGAG
GAGGGGTGGAAAGCCCCAAGCTGGCATCCTGGGTGTTGGGGGGGGAGGCG
GGTCAGAAGTATAGGGTGATGGTGCCACTGCCGGCGGGGGAGGGAGGGCA
GGTCGGGAGGGGGGAAAGGGAGGAGGGAACCACAATACGGTTGGTTTTTG
GCGGAGGATTGGAGGGAGAGGTGGTGAGGGAAGGCAAGAGGAAGAGGGAA
GAGGGGGGGGGGGGGGGAGGGGAGTGA

Synonyms

Publications