jgi.p|Nanoce1779_2|606212, mRNA_9504 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606212
Unique NamemRNA_9504
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1056
Alignment locationscaffold_34:182701..184316 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606298
TrackFilteredModels2
ProteinId606212
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:182701..184316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606212gene_9504Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606212mRNA_9504-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9504CDS_9504Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9504 ID=mRNA_9504|Name=jgi.p|Nanoce1779_2|606212|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ACACACACACACACACACACACACGCACGCACACAAACATAAATTAGTAG
GAGACTCTGCACACCAGCACCGCCTCTGTATCGACAGTGTTGGCTAGCGA
AAGACCGGTTTGGCGTTGCAAAGGTTGTACCTCCCCACAGACAGGGTACA
AGATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTC
CCACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGA
CACCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAA
AAAAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTG
GGAGAGGCAAATGCTGACCCACCTGTAACTGCCACCCAAGCCGTGGCCGA
AATCGACGATCTTTTTGCAGGTCTCTCCCGCCACAAACAAACCGTTGCTG
CTGCAGCTGCTGCTGCAGCAGCTGCAGAAATCAAGAAGAAGAAAAAAGAG
CAGGAATTGAAGCAGAAGAATTCGGAGAGAGAGGCGAGGGAGGGGAGAGA
GGGACAGAGGTATGATCCAAAAAGAGACGACCCGGACGTTCGGCCATGGA
AGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGATGCGCGTG
GGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAATTGCTGCTT
TGGTTAGTTGAAGGTTTCTCTGAAATTAGGGGAAGAAGAGGAGGGGGGGA
AAGAAAAAATATCGCGGGTTACAAAAAATTGCATTTTCTTTAGTGATGTT
GCTGAGATGCACTTCATTCAGATCGTCGCCTGCGCGGGACCTGTCGAGTA
GCCTGATTTGACTTGCCACGATGCCACCATGATCATGAAACAGGGCCGAA
AATATTGCTTGATTAAACCTACGTTGTTACGCACAGATGGACACCCTAAA
GTTGGAAAAAGCGACTTGAAAGCGCTACGATGTGAAAAAGTTAAGGCACT
TTCCCTTCTCCCAATGCAAGAAATAACGCGCGAAGGGATAGAAGTCCTGT
GTGCGG
back to top

protein sequence of jgi.p|Nanoce1779_2|606212

>mRNA_9504-protein ID=mRNA_9504-protein|Name=jgi.p|Nanoce1779_2|606212|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MGKKRGLVEAEEAAAVPPHHQQQHPCDDKVKGDTNIKRQEAKDAGELKKK
KKIKKLKLKATTTSEVGEANADPPVTATQAVAEIDDLFAGLSRHKQTVAA
AAAAAAAAEIKKKKKEQELKQKNSEREAREGREGQRYDPKRDDPDVRPWK
RDSSGMPIYDPDSMRVGKGGGTSLCPFDCNCCFG*
back to top

mRNA from alignment at scaffold_34:182701..184316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9504 ID=mRNA_9504|Name=jgi.p|Nanoce1779_2|606212|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp|location=Sequence derived from alignment at scaffold_34:182701..184316- (Nannochloropsis oceanica)
ACACACACACACACACACACACACGCACGCACACAAACATAAATTAGTAG
GAGACTCTGCACACCAGCACCGCCTCTGTATCGACAGTGTTGGCTAGCGA
AAGACCGGTTTGGCGTTGCAAAGGTTGTACCTCCCCACAGACAGGGTACA
AGATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTC
CCACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGA
CACCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAA
AAAAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTG
GGAGAGGCAAATGTACGTGTGTCAGGGATACTGTGCGAGTGTGCCTACGA
CGAATGTATGGATCCATTGATGAACGTAGAGAGCGCATCCTATCCTTGTG
GGGGGGAGCGGGTTTAGATGCAGGCACGAGGCAGCCGTCGTCATAGGGGG
CACCCTCCATTCCTCCTATTTGAATGCTCTCTTCACCTCTTCCTCCTTTC
CGCTGAGCAGTACCGCTTGATTGTACCTCATTCTACGCACTGCATTTTTC
TTCCTCTTTCATCCGACCTCTCCGAGCTCCCTTTCCAACAGGCTGACCCA
CCTGTAACTGCCACCCAAGCCGTGGCCGAAATCGACGATCTTTTTGCAGG
TCTCTCCCGCCACAAACAAACCGTTGCTGCTGCAGCTGCTGCTGCAGCAG
CTGCAGAAATCAAGAAGAAGAAAAAAGAGCAGGAATTGAAGCAGAAGAAT
TCGGAGAGAGAGGCGAGGGAGGGGAGAGAGGGACAGAGGTATGATCCAAA
AAGAGACGACCCGGACGTTCGGCCATGTAAGTAAAGTTAAGGGAGGGGGG
AAGGGCTAGGGGCAGGGAAGGATAGAGGGGAGAAAGGAAAAGTGCAACAG
GATCACAGTAATGTGGATGAGGGAAAACAGGAGGATGGAATGGAGTGAAG
CAAAGCAAAGAGGATGGGGCTGGAAAGATGCGAAAGAGAAACTTCATAAG
ATGCTTCACTTAGGCATGGAAGAGAGGGCAGCGTGCACGGGGATCCTATA
ATTCACACACGATGATACCCCCATCCACCAATCAAACGCAATTAAACATC
AAACCAGGGAAGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTC
GATGCGCGTGGGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCA
ATTGCTGCTTTGGTTAGTTGAAGGTTTCTCTGAAATTAGGGGAAGAAGAG
GAGGGGGGGAAAGAAAAAATATCGCGGGTTACAAAAAATTGCATTTTCTT
TAGTGATGTTGCTGAGATGCACTTCATTCAGATCGTCGCCTGCGCGGGAC
CTGTCGAGTAGCCTGATTTGACTTGCCACGATGCCACCATGATCATGAAA
CAGGGCCGAAAATATTGCTTGATTAAACCTACGTTGTTACGCACAGATGG
ACACCCTAAAGTTGGAAAAAGCGACTTGAAAGCGCTACGATGTGAAAAAG
TTAAGGCACTTTCCCTTCTCCCAATGCAAGAAATAACGCGCGAAGGGATA
GAAGTCCTGTGTGCGG
back to top

Coding sequence (CDS) from alignment at scaffold_34:182701..184316-

>mRNA_9504 ID=mRNA_9504|Name=jgi.p|Nanoce1779_2|606212|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_34:182701..184316- (Nannochloropsis oceanica)
GGAAGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGATGCGC
GTGGGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAATTGCTG
CTTTGGTTAGGCTGACCCACCTGTAACTGCCACCCAAGCCGTGGCCGAAA
TCGACGATCTTTTTGCAGGTCTCTCCCGCCACAAACAAACCGTTGCTGCT
GCAGCTGCTGCTGCAGCAGCTGCAGAAATCAAGAAGAAGAAAAAAGAGCA
GGAATTGAAGCAGAAGAATTCGGAGAGAGAGGCGAGGGAGGGGAGAGAGG
GACAGAGGTATGATCCAAAAAGAGACGACCCGGACGTTCGGCCATATGGG
CAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTCCCACCAC
ACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGACACCAAT
ATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAAAAAAGAA
GATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTGGGAGAGG
CAAATGGAAGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGA
TGCGCGTGGGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAAT
TGCTGCTTTGGTTAGGCTGACCCACCTGTAACTGCCACCCAAGCCGTGGC
CGAAATCGACGATCTTTTTGCAGGTCTCTCCCGCCACAAACAAACCGTTG
CTGCTGCAGCTGCTGCTGCAGCAGCTGCAGAAATCAAGAAGAAGAAAAAA
GAGCAGGAATTGAAGCAGAAGAATTCGGAGAGAGAGGCGAGGGAGGGGAG
AGAGGGACAGAGGTATGATCCAAAAAGAGACGACCCGGACGTTCGGCCAT
ATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTCCC
ACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGACA
CCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAAAA
AAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTGGG
AGAGGCAAATGGAAGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGA
CTCGATGCGCGTGGGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACT
GCAATTGCTGCTTTGGTTAGGCTGACCCACCTGTAACTGCCACCCAAGCC
GTGGCCGAAATCGACGATCTTTTTGCAGGTCTCTCCCGCCACAAACAAAC
CGTTGCTGCTGCAGCTGCTGCTGCAGCAGCTGCAGAAATCAAGAAGAAGA
AAAAAGAGCAGGAATTGAAGCAGAAGAATTCGGAGAGAGAGGCGAGGGAG
GGGAGAGAGGGACAGAGGTATGATCCAAAAAGAGACGACCCGGACGTTCG
GCCATATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCG
GTCCCACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGG
AGACACCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAA
AAAAAAAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAG
GTGGGAGAGGCAAAT
back to top
Synonyms
Publications