jgi.p|Nanoce1779_2|606206, mRNA_9503 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606206
Unique NamemRNA_9503
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length913
Alignment locationscaffold_34:181355..182612 -

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Properties
Property NameValue
TranscriptId606292
TrackFilteredModels2
ProteinId606206
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:181355..182612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606206gene_9503Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606206mRNA_9503-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9503CDS_9503Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9503 ID=mRNA_9503|Name=jgi.p|Nanoce1779_2|606206|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
ACAGATACAGGGAAAGTGGAAGCCACAACTATGGCCACTGCTCGGTCCCT
GACTTGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTCCC
TGCTCCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGACAC
AGCACCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGCGT
TGTGGCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCT
CCTCCTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATGAT
GACTTAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCTCG
CCTGGGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGCCC
TAGGGATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGTCA
CCTGAGACACGTATCGTCGCTGCCATCCTCGGTCGCTTCATCATCCCCAT
TGGCCTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCGCGAAG
AGGCCACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGAAGGAG
GCCTACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGCGTGGG
GGGCAGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGAAGAGG
GGACGCAGCTTATGGTGACTGAGAAAGCTGCCTGGGTTAAGCTACTGCAG
CGAGCTCAGTACTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGC
CGAGATAGCCATCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGA
ACAAGACGGTCAAAGCCGCGGGATTTAAGTCCGAGTAAAGAGGGAAGGGA
AGCAGGAGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|606206

>mRNA_9503-protein ID=mRNA_9503-protein|Name=jgi.p|Nanoce1779_2|606206|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MATARSLTCLVLSSASCLLVLLSLLLPQSTVTFFLLPNGHSTISISSTRI
RAQTRSVVATSSPSSPLFSSSSFSSSTCFPQMMRKQQQHDDLAEEQQLQQ
KSGVLPRLGRIVKMTIFPSIVTALGMAVQPAHAYRDMRMSPETRIVAAIL
GRFIIPIGLCLYFAVNRKRMAREEATRVKAALDKEQQKKEAYLAEMKEQG
FNLGSVGGSLTKEEEDMISRVEEGTQLMVTEKAAWVKLLQRAQYSRDVVD
GKAQPNAEIAIMTKKELKRVVNANKTVKAAGFKSE*
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mRNA from alignment at scaffold_34:181355..182612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9503 ID=mRNA_9503|Name=jgi.p|Nanoce1779_2|606206|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp|location=Sequence derived from alignment at scaffold_34:181355..182612- (Nannochloropsis oceanica)
ACAGATACAGGGAAAGTGGAAGCCACAACTATGGCCACTGCTCGGTCCCT
GACTTGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTCCC
TGCTCCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGACAC
AGCACCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGCGT
TGTGGCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCT
CCTCCTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATGAT
GACTTAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCTCG
CCTGGGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGCCC
TAGGGATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGTCA
CCTGAGACACGTATCGTCGCTGCCAGTAAGTACCCGTACCCCCCCTCCTT
CCCTCCATCCATCCATCCATCAAACTTGTCCGGGTGTGTCATAGCATGTT
CTGCACGTTGGTTGACTTCATTGTCTTCTCTTGAAGATTCCATCCCATTC
ACTCACTCCTCCCTCCCTGTCTCTCTTTCCTTCCTCCCTCCCTCCCTCTT
TCCCTGTCTCCTTCCCACCCTCCTTCAGTCCTCGGTCGCTTCATCATCCC
CATTGGCCTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCGCG
AAGAGGCCACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGAAG
GAGGCCTACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGCGT
GGGGGGCAGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGAAG
AGGGGACGCAGCTTATGGTGACTGAGAAAGGTAAGGGTGCCAAAATCGAG
GGAGAGTTTCCTTCCTTCTCTTCAATCTGCTTGGTCAGTGGACTCACCCC
TCCGACCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCTTC
CCTTCCTCCCTCGCCTGCGCAGCTGCCTGGGTTAAGCTACTGCAGCGAGC
TCAGTACTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGCCGAGA
TAGCCATCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGAACAAG
ACGGTCAAAGCCGCGGGATTTAAGTCCGAGTAAAGAGGGAAGGGAAGCAG
GAGGGGGG
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Coding sequence (CDS) from alignment at scaffold_34:181355..182612-

>mRNA_9503 ID=mRNA_9503|Name=jgi.p|Nanoce1779_2|606206|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_34:181355..182612- (Nannochloropsis oceanica)
CTGCCTGGGTTAAGCTACTGCAGCGAGCTCAGTACTCGCGCGACGTGGTG
GATGGCAAGGCACAGCCAAATGCCGAGATAGCCATCATGACGAAGAAGGA
GCTGAAACGGGTGGTAAATGCGAACAAGACGGTCAAAGCCGCGGGATTTA
AGTCCGAGTAATCCTCGGTCGCTTCATCATCCCCATTGGCCTTTGTCTCT
ACTTTGCCGTCAACCGAAAACGCATGGCCCGCGAAGAGGCCACACGGGTC
AAGGCAGCCCTAGACAAGGAGCAACAAAAGAAGGAGGCCTACCTGGCCGA
GATGAAAGAGCAGGGGTTTAATTTAGGCAGCGTGGGGGGCAGTCTGACGA
AGGAAGAGGAGGACATGATCAGCAGGGTGGAAGAGGGGACGCAGCTTATG
GTGACTGAGAAAGATGGCCACTGCTCGGTCCCTGACTTGTCTCGTCCTCT
CCTCCGCATCATGCCTCCTCGTACTGCTTTCCCTGCTCCTACCCCAAAGC
ACCGTAACCTTCTTCCTCCTCCCCAATGGACACAGCACCATCAGCATCAG
CAGTACAAGAATAAGAGCTCAAACTCGCAGCGTTGTGGCCACCTCCTCTC
CTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCTCCTCCTCTACCTGTTTC
CCCCAGATGATGAGAAAGCAGCAACAGCATGATGACTTAGCTGAGGAGCA
GCAACTGCAGCAGAAGAGCGGCGTCCTACCTCGCCTGGGTCGCATTGTCA
AGATGACAATTTTCCCCTCTATTGTGACTGCCCTAGGGATGGCCGTCCAG
CCCGCGCATGCTTACCGGGATATGCGGATGTCACCTGAGACACGTATCGT
CGCTGCCACTGCCTGGGTTAAGCTACTGCAGCGAGCTCAGTACTCGCGCG
ACGTGGTGGATGGCAAGGCACAGCCAAATGCCGAGATAGCCATCATGACG
AAGAAGGAGCTGAAACGGGTGGTAAATGCGAACAAGACGGTCAAAGCCGC
GGGATTTAAGTCCGAGTAATCCTCGGTCGCTTCATCATCCCCATTGGCCT
TTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCGCGAAGAGGCCA
CACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGAAGGAGGCCTAC
CTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGCGTGGGGGGCAG
TCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGAAGAGGGGACGC
AGCTTATGGTGACTGAGAAAGATGGCCACTGCTCGGTCCCTGACTTGTCT
CGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTCCCTGCTCCTAC
CCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGACACAGCACCATC
AGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGCGTTGTGGCCAC
CTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCTCCTCCTCTA
CCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATGATGACTTAGCT
GAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCTCGCCTGGGTCG
CATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGCCCTAGGGATGG
CCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGTCACCTGAGACA
CGTATCGTCGCTGCCACTGCCTGGGTTAAGCTACTGCAGCGAGCTCAGTA
CTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGCCGAGATAGCCA
TCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGAACAAGACGGTC
AAAGCCGCGGGATTTAAGTCCGAGTAATCCTCGGTCGCTTCATCATCCCC
ATTGGCCTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCGCGA
AGAGGCCACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGAAGG
AGGCCTACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGCGTG
GGGGGCAGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGAAGA
GGGGACGCAGCTTATGGTGACTGAGAAAGATGGCCACTGCTCGGTCCCTG
ACTTGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTCCCT
GCTCCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGACACA
GCACCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGCGTT
GTGGCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCTC
CTCCTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATGATG
ACTTAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCTCGC
CTGGGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGCCCT
AGGGATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGTCAC
CTGAGACACGTATCGTCGCTGCCA
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Synonyms
Publications