jgi.p|Nanoce1779_2|268756, mRNA_9501 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|268756
Unique Name	mRNA_9501
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1555
Alignment location	scaffold_34:177383..179362 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	268842
Track	FilteredModels2
ProteinId	268756

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:177383..179362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|268756	gene_9501	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|268756	mRNA_9501-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9501	CDS_9501	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:177383..179362+
coding sequence from alignment at scaffold_34:177383..179362+

mRNA sequence

>mRNA_9501 ID=mRNA_9501|Name=jgi.p|Nanoce1779_2|268756|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp
GGTGGGGAGGTCGTGAGAGGGGGGTTGGTAGGGGTTGTGAAGCAAAGAAA
GACATGAAAGGGACGACAAGAGTTGCAAGAATTTTAGCTGCTGGTAAACC
TTCTGAAGATTACTCTGCTCTTGTGGTTGCGGTGGACAGACATGCCACGA
CGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAACAGCGGCGG
CACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCAGTAAGGAGC
AGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGAC
GACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCAAATCATAAA
TGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGGGGGCAGTCC
AAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTGTCACCAACA
CCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTCATGGCGAGA
CCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGGAGGCCGGTG
AATCCTGCTGCTTGGTGGGCAGCATGGGGATCCATGTGCTGAGAGGGGAG
GTCGATATTCTGGGGCACGCGTTACGAGCGCCAATGACAGGGCCTGTGCC
CATGCACTCACCCAAGTGGATGTCTTCCCTCGTCATCACTGCCTCCTCCT
CATCGTCTTCCTCGTCACCTGAGAACAGCAGCAATATCAATTTTCTTCCC
TCCTCGCTTGCCTCCTCCTCTCTTCCCGTCCTCCTCCATCTCACCCCTGT
CTCAACTTCCATCTGCCGCTTACCTCGCTTCTTGACGGCCTACGACGATG
CTGAGGCCCTGTGGGCACGTCACAGCCCTCCTCCTCCTTCCCCTCCTCCT
CTATCTCCTGCTCCCCCTCCCCCATTCGAAAGTGGAAAGGACGCGAAGCA
AGATAGAGAAGAGGAGCAGCACCAGCATCAGGACGAGGATAATGATGGGT
CGGTAATTTTGCACCTACCCGGAGCCATTGTGATGGAGGAAAGGGTCTTA
GTGGAGTGCTTGGGCTTGCGGCCCTTGCACATCCCGCAATCCTGGAAAAA
TACGGCGGATGAGATCATCTCTTTGCAGGCCACTGCTCAGGGAACCTCCA
GCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGGAGTAATAGC
AGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAAGAAAGAAGC
ACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGATTTGTGGCG
GGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCCTCGCCCATCGTTT
CCTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTCCTTCCGTCG
CCTACCTCGACTGTGACGTCGGCCAGCCGGAGTTGACTCCCTCAGGGCTC
GTCTCCCTCTCCCTGCTCTCTAACTCCCTCCCTCCCACCACCTTTCCCCT
CCTTGGCCCCCCCCACACCCACTGCTCCTTCCCGTCCTCCCTCCCGCCCT
CCCTC

protein sequence of jgi.p|Nanoce1779_2|268756

>mRNA_9501-protein ID=mRNA_9501-protein|Name=jgi.p|Nanoce1779_2|268756|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MPRRRRKRSRSCSVGSNSGGTSAGKRGGRSKRSSKEQEIKRHEEEEEEEE
EDDDDEEEKMEDDESCQIINEDEDEDGNVEEEEGAVQKAVESTAAAAPGL
SPTPVLGHTPSYKRLRSWRDPEKKPQGGMFLGMEAGESCCLVGSMGIHVL
RGEVDILGHALRAPMTGPVPMHSPKWMSSLVITASSSSSSSSPENSSNIN
FLPSSLASSSLPVLLHLTPVSTSICRLPRFLTAYDDAEALWARHSPPPPS
PPPLSPAPPPPFESGKDAKQDREEEQHQHQDEDNDGSVILHLPGAIVMEE
RVLVECLGLRPLHIPQSWKNTADEIISLQATAQGTSSPATATTNGSSSNR
SNSSNNNRSSKGKEMLKKEAQREGGRECGLVIAICGGKGTGKSTFGRYPR
PSFPGLPPSRPPSLPSSFRRLPRL*

mRNA from alignment at scaffold_34:177383..179362+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9501 ID=mRNA_9501|Name=jgi.p|Nanoce1779_2|268756|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_34:177383..179362+ (Nannochloropsis oceanica)
GGTGGGGAGGTCGTGAGAGGGGGGTTGGTAGGGGTTGTGAAGCAAAGAAA
GACATGAAAGGGACGACAAGAGTTGCAAGAATTTTAGCTGCTGGTAAACC
TTCTGAAGATTACTCTGCTCTTGTGGTTGCGGTGGTGAGTTAATCGATTT
GTTTCCCACCTTCATTCATCAATGCTAAAGAGGATTCTCGCTGCCCGATT
CCATTCCTCTTCTCTCCTTCGTACTTACCCAGCCGCTCGACCACATTTTC
CACACTACACCATCTAAGGACAGACATGCCACGACGGAGACGAAAGCGAT
CCCGGTCATGCAGCGTGGGCAGCAACAGCGGCGGCACATCGGCGGGTAAG
CGAGGTGGGCGTAGCAAACGGAGCAGTAAGGAGCAGGAGATCAAGCGGCA
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGAGGAGGAGA
AAATGGAAGACGATGAGAGCTGCCAAATCATAAATGAGGACGAGGATGAG
GACGGGAACGTAGAGGAGGAAGAGGGGGCAGTCCAAAAAGCAGTGGAATC
GACAGCTGCAGCTGCACCAGGTCTGTCACCAACACCAGTTCTGGGTCATA
CTCCCTCTTACAAGCGACTTCGGTCATGGCGAGACCCCGAGAAGAAGCCA
CAAGGCGGCATGTTCCTGGGCATGGAGGTATGTCCTGATAGAGCAGGCTG
TCCCTCCCTCCCTCTCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCTTCCTCCTCCACCCCCCCCCTCATCTGTGTCCCATTTTATTCA
AACAGGCCGGTGAATCCTGCTGCTTGGTGGGCAGCATGGGGATCCATGTG
CTGAGAGGGGAGGTCGATATTCTGGGGCACGCGTTACGAGCGCCAATGAC
AGGGCCTGTGCCCATGCACTCACCCAAGTGGATGTCTTCCCTCGTCATCA
CTGCCTCCTCCTCATCGTCTTCCTCGTCACCTGAGAACAGCAGCAATATC
AATTTTCTTCCCTCCTCGCTTGCCTCCTCCTCTCTTCCCGTCCTCCTCCA
TCTCACCCCTGTCTCAACTTCCATCTGCCGCTTACCTCGCTTCTTGACGG
CCTACGACGATGCTGAGGCCCTGTGGGCACGTCACAGCCCTCCTCCTCCT
TCCCCTCCTCCTCTATCTCCTGCTCCCCCTCCCCCATTCGAAAGTGGAAA
GGACGCGAAGCAAGATAGAGAAGAGGAGCAGCACCAGCATCAGGACGAGG
ATAATGATGGGTCGGTAATTTTGCACCTACCCGGAGCCATTGTGATGGAG
GAAAGGGTCTTAGTGGAGTGCTTGGGCTTGCGGCCCTTGCACATCCCGCA
ATCCTGGAAAAATACGGCGGATGAGGTGCGTTTTGGTTCTTCCCTCCCTC
CCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCGCCCTTCTTTTTGGCG
CATTTACCTTTTCATCCCAGCTCAAACACTCTCCACCTCTCCCCCCGTCC
CACCCTCCGTCCCTCCTTCCTTCCCTCCCTCCACCCAGATCATCTCTTTG
CAGGCCACTGCTCAGGGAACCTCCAGCCCAGCCACCGCCACCACCAACGG
CAGCAGCAGCAACAGGAGTAATAGCAGCAACAACAACAGAAGTAGCAAGG
GGAAAGAAATGCTAAAGAAAGAAGCACAGAGGGAGGGAGGGAGGGAGTGT
GGGCTCGTCATCGCGATTTGTGGCGGGAAAGGCACGGGTAAATCCACTTT
TGGCCGCTACCCTCGCCCATCGTTTCCTGGCCTCCCTCCCTCCCGCCCTC
CCTCCCTCCCTTCCTCCTTCCGTCGCCTACCTCGACTGTGACGTCGGCCA
GCCGGAGTTGACTCCCTCAGGGCTCGTCTCCCTCTCCCTGCTCTCTAACT
CCCTCCCTCCCACCACCTTTCCCCTCCTTGGCCCCCCCCACACCCACTGC
TCCTTCCCGTCCTCCCTCCCGCCCTCCCTC

Coding sequence (CDS) from alignment at scaffold_34:177383..179362+

>mRNA_9501 ID=mRNA_9501|Name=jgi.p|Nanoce1779_2|268756|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_34:177383..179362+ (Nannochloropsis oceanica)
ATGCCACGACGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAA
CAGCGGCGGCACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCA
GTAAGGAGCAGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGACGACGACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCA
AATCATAAATGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGG
GGGCAGTCCAAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTG
TCACCAACACCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTC
ATGGCGAGACCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGG
AGGCCGGTGAATCCTGCTGCTTGGTGGGCAGCATGGGGATCCATGTGCTG
AGAGGGGAGGTCGATATTCTGGGGCACGCGTTACGAGCGCCAATGACAGG
GCCTGTGCCCATGCACTCACCCAAGTGGATGTCTTCCCTCGTCATCACTG
CCTCCTCCTCATCGTCTTCCTCGTCACCTGAGAACAGCAGCAATATCAAT
TTTCTTCCCTCCTCGCTTGCCTCCTCCTCTCTTCCCGTCCTCCTCCATCT
CACCCCTGTCTCAACTTCCATCTGCCGCTTACCTCGCTTCTTGACGGCCT
ACGACGATGCTGAGGCCCTGTGGGCACGTCACAGCCCTCCTCCTCCTTCC
CCTCCTCCTCTATCTCCTGCTCCCCCTCCCCCATTCGAAAGTGGAAAGGA
CGCGAAGCAAGATAGAGAAGAGGAGCAGCACCAGCATCAGGACGAGGATA
ATGATGGGTCGGTAATTTTGCACCTACCCGGAGCCATTGTGATGGAGGAA
AGGGTCTTAGTGGAGTGCTTGGGCTTGCGGCCCTTGCACATCCCGCAATC
CTGGAAAAATACGGCGGATGAGATCATCTCTTTGCAGGCCACTGCTCAGG
GAACCTCCAGCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGG
AGTAATAGCAGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAA
GAAAGAAGCACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGA
TTTGTGGCGGGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCCTCGC
CCATCGTTTCCTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTC
CTTCCGTCGCCTACCTCGACTGTGAATGCCACGACGGAGACGAAAGCGAT
CCCGGTCATGCAGCGTGGGCAGCAACAGCGGCGGCACATCGGCGGGTAAG
CGAGGTGGGCGTAGCAAACGGAGCAGTAAGGAGCAGGAGATCAAGCGGCA
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGAGGAGGAGA
AAATGGAAGACGATGAGAGCTGCCAAATCATAAATGAGGACGAGGATGAG
GACGGGAACGTAGAGGAGGAAGAGGGGGCAGTCCAAAAAGCAGTGGAATC
GACAGCTGCAGCTGCACCAGGTCTGTCACCAACACCAGTTCTGGGTCATA
CTCCCTCTTACAAGCGACTTCGGTCATGGCGAGACCCCGAGAAGAAGCCA
CAAGGCGGCATGTTCCTGGGCATGGAGGCCGGTGAATCCTGCTGCTTGGT
GGGCAGCATGGGGATCCATGTGCTGAGAGGGGAGGTCGATATTCTGGGGC
ACGCGTTACGAGCGCCAATGACAGGGCCTGTGCCCATGCACTCACCCAAG
TGGATGTCTTCCCTCGTCATCACTGCCTCCTCCTCATCGTCTTCCTCGTC
ACCTGAGAACAGCAGCAATATCAATTTTCTTCCCTCCTCGCTTGCCTCCT
CCTCTCTTCCCGTCCTCCTCCATCTCACCCCTGTCTCAACTTCCATCTGC
CGCTTACCTCGCTTCTTGACGGCCTACGACGATGCTGAGGCCCTGTGGGC
ACGTCACAGCCCTCCTCCTCCTTCCCCTCCTCCTCTATCTCCTGCTCCCC
CTCCCCCATTCGAAAGTGGAAAGGACGCGAAGCAAGATAGAGAAGAGGAG
CAGCACCAGCATCAGGACGAGGATAATGATGGGTCGGTAATTTTGCACCT
ACCCGGAGCCATTGTGATGGAGGAAAGGGTCTTAGTGGAGTGCTTGGGCT
TGCGGCCCTTGCACATCCCGCAATCCTGGAAAAATACGGCGGATGAGATC
ATCTCTTTGCAGGCCACTGCTCAGGGAACCTCCAGCCCAGCCACCGCCAC
CACCAACGGCAGCAGCAGCAACAGGAGTAATAGCAGCAACAACAACAGAA
GTAGCAAGGGGAAAGAAATGCTAAAGAAAGAAGCACAGAGGGAGGGAGGG
AGGGAGTGTGGGCTCGTCATCGCGATTTGTGGCGGGAAAGGCACGGGTAA
ATCCACTTTTGGCCGCTACCCTCGCCCATCGTTTCCTGGCCTCCCTCCCT
CCCGCCCTCCCTCCCTCCCTTCCTCCTTCCGTCGCCTACCTCGACTGTGA
ATGCCACGACGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAA
CAGCGGCGGCACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCA
GTAAGGAGCAGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGACGACGACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCA
AATCATAAATGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGG
GGGCAGTCCAAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTG
TCACCAACACCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTC
ATGGCGAGACCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGG
AGGCCGGTGAATCCTGCTGCTTGGTGGGCAGCATGGGGATCCATGTGCTG
AGAGGGGAGGTCGATATTCTGGGGCACGCGTTACGAGCGCCAATGACAGG
GCCTGTGCCCATGCACTCACCCAAGTGGATGTCTTCCCTCGTCATCACTG
CCTCCTCCTCATCGTCTTCCTCGTCACCTGAGAACAGCAGCAATATCAAT
TTTCTTCCCTCCTCGCTTGCCTCCTCCTCTCTTCCCGTCCTCCTCCATCT
CACCCCTGTCTCAACTTCCATCTGCCGCTTACCTCGCTTCTTGACGGCCT
ACGACGATGCTGAGGCCCTGTGGGCACGTCACAGCCCTCCTCCTCCTTCC
CCTCCTCCTCTATCTCCTGCTCCCCCTCCCCCATTCGAAAGTGGAAAGGA
CGCGAAGCAAGATAGAGAAGAGGAGCAGCACCAGCATCAGGACGAGGATA
ATGATGGGTCGGTAATTTTGCACCTACCCGGAGCCATTGTGATGGAGGAA
AGGGTCTTAGTGGAGTGCTTGGGCTTGCGGCCCTTGCACATCCCGCAATC
CTGGAAAAATACGGCGGATGAGATCATCTCTTTGCAGGCCACTGCTCAGG
GAACCTCCAGCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGG
AGTAATAGCAGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAA
GAAAGAAGCACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGA
TTTGTGGCGGGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCCTCGC
CCATCGTTTCCTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTC
CTTCCGTCGCCTACCTCGACTGTGA

Synonyms

Publications