jgi.p|Nanoce1779_2|606197, mRNA_9500 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606197
Unique NamemRNA_9500
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_34:176342..177354 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606283
TrackFilteredModels2
ProteinId606197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:176342..177354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606197gene_9500Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606197mRNA_9500-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9500CDS_9500Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9500 ID=mRNA_9500|Name=jgi.p|Nanoce1779_2|606197|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
ACAGCGCAAAACCTCCTGCAATATGCTTTCCTTGGCCCGATCTCGCACAG
AGCTAGACTTCATCGAAGCAGGGGTAGCACAGGACGTTCGCGCCGACGGC
CGCCGTCGCATCGACTACCGGGAAATCAGCGTAGCTGTGGACGTGCACCC
ATCGGCCAATGGCTCTGCACGCGTCATCCTCGGGCAAGGGGCCACTGAGG
TCCTTGCCGTCGTCAAAGCTGAGCTCTCCCAGCCGTCGCACGAACACCCC
AAGCGAGGCAAGCTGGAAGTGAATATCGAAGTCTCCCCTTTGGCGTTGCT
GCACCGCGAGACGGCCCGGGACGGGGAGGACCTCAACGCCGACTTGACCA
AGGCATTTGAGACATTCCTAATACGGGCAGAAGCCCTGGACATGGAAGCG
CTATGCATTACTCCAGGAAGGTTTAGCTGGACAGTATACCTCGATGTCTT
GATATTAGAAGGACAAGGTAATTTGCTTGACACCATCTCCTTCGCCGCCT
ATGCTGCCCTACGAACGGCGCGCCTTCCCAAAATCGATGCCATATCAGGC
GGACTCGACGCAGCCAATGACCCCATCGAAGACTTCGAATTGTCATCCAC
GGACATCACGGAAGCCATTGGCCTGCCCATCAAGAATCTCCCCATCTGCA
TCTCTCTCAATCGCATTGGCAACTTTTTGGTAGTCGACACGGCTGCGGAC
GAGGAAGCGGAGGGAGGGGTAAAAGGGCGAGTGACAGTGGCAGTGGATGA
AACAGGGCATGTTTGTGGTATTCACAAAGGGGCAGGAGGGGGGTTTCCTG
CACGGGAGCTGCAGGGTATGACGCAGCATGTGGTGCCGATTGCTCTGAAA
GTACTGGAGGGGCTTAAAGCAGTGCTTGGTTTGAAGGAAGGGGGAAATGG
GAATGGACAAGAGGGGATTAGCGGGGAGATACCACGATAGATCAAAATGA
GGGAATGGAGAATAGATGATCAAAGAACTTGTAACATTATCAAACCAAGG
GTAAGAAGACAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|606197

>mRNA_9500-protein ID=mRNA_9500-protein|Name=jgi.p|Nanoce1779_2|606197|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSAR
VILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARD
GEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGN
LLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIG
LPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGI
HKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGIS
GEIPR*
back to top

mRNA from alignment at scaffold_34:176342..177354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9500 ID=mRNA_9500|Name=jgi.p|Nanoce1779_2|606197|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp|location=Sequence derived from alignment at scaffold_34:176342..177354- (Nannochloropsis oceanica)
ACAGCGCAAAACCTCCTGCAATATGCTTTCCTTGGCCCGATCTCGCACAG
AGCTAGACTTCATCGAAGCAGGGGTAGCACAGGACGTTCGCGCCGACGGC
CGCCGTCGCATCGACTACCGGGAAATCAGCGTAGCTGTGGACGTGCACCC
ATCGGCCAATGGCTCTGCACGCGTCATCCTCGGGCAAGGGGCCACTGAGG
TCCTTGCCGTCGTCAAAGCTGAGCTCTCCCAGCCGTCGCACGAACACCCC
AAGCGAGGCAAGCTGGAAGTGAATATCGAAGTCTCCCCTTTGGCGTTGCT
GCACCGCGAGACGGCCCGGGACGGGGAGGACCTCAACGCCGACTTGACCA
AGGCATTTGAGACATTCCTAATACGGGCAGAAGCCCTGGACATGGAAGCG
CTATGCATTACTCCAGGAAGGTTTAGCTGGACAGTATACCTCGATGTCTT
GATATTAGAAGGACAAGGTAATTTGCTTGACACCATCTCCTTCGCCGCCT
ATGCTGCCCTACGAACGGCGCGCCTTCCCAAAATCGATGCCATATCAGGC
GGACTCGACGCAGCCAATGACCCCATCGAAGACTTCGAATTGTCATCCAC
GGACATCACGGAAGCCATTGGCCTGCCCATCAAGAATCTCCCCATCTGCA
TCTCTCTCAATCGCATTGGCAACTTTTTGGTAGTCGACACGGCTGCGGAC
GAGGAAGCGGAGGGAGGGGTAAAAGGGCGAGTGACAGTGGCAGTGGATGA
AACAGGGCATGTTTGTGGTATTCACAAAGGGGCAGGAGGGGGGTTTCCTG
CACGGGAGCTGCAGGGTATGACGCAGCATGTGGTGCCGATTGCTCTGAAA
GTACTGGAGGGGCTTAAAGCAGTGCTTGGTTTGAAGGAAGGGGGAAATGG
GAATGGACAAGAGGGGATTAGCGGGGAGATACCACGATAGATCAAAATGA
GGGAATGGAGAATAGATGATCAAAGAACTTGTAACATTATCAAACCAAGG
GTAAGAAGACAGG
back to top

Coding sequence (CDS) from alignment at scaffold_34:176342..177354-

>mRNA_9500 ID=mRNA_9500|Name=jgi.p|Nanoce1779_2|606197|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_34:176342..177354- (Nannochloropsis oceanica)
ATGCTTTCCTTGGCCCGATCTCGCACAGAGCTAGACTTCATCGAAGCAGG
GGTAGCACAGGACGTTCGCGCCGACGGCCGCCGTCGCATCGACTACCGGG
AAATCAGCGTAGCTGTGGACGTGCACCCATCGGCCAATGGCTCTGCACGC
GTCATCCTCGGGCAAGGGGCCACTGAGGTCCTTGCCGTCGTCAAAGCTGA
GCTCTCCCAGCCGTCGCACGAACACCCCAAGCGAGGCAAGCTGGAAGTGA
ATATCGAAGTCTCCCCTTTGGCGTTGCTGCACCGCGAGACGGCCCGGGAC
GGGGAGGACCTCAACGCCGACTTGACCAAGGCATTTGAGACATTCCTAAT
ACGGGCAGAAGCCCTGGACATGGAAGCGCTATGCATTACTCCAGGAAGGT
TTAGCTGGACAGTATACCTCGATGTCTTGATATTAGAAGGACAAGGTAAT
TTGCTTGACACCATCTCCTTCGCCGCCTATGCTGCCCTACGAACGGCGCG
CCTTCCCAAAATCGATGCCATATCAGGCGGACTCGACGCAGCCAATGACC
CCATCGAAGACTTCGAATTGTCATCCACGGACATCACGGAAGCCATTGGC
CTGCCCATCAAGAATCTCCCCATCTGCATCTCTCTCAATCGCATTGGCAA
CTTTTTGGTAGTCGACACGGCTGCGGACGAGGAAGCGGAGGGAGGGGTAA
AAGGGCGAGTGACAGTGGCAGTGGATGAAACAGGGCATGTTTGTGGTATT
CACAAAGGGGCAGGAGGGGGGTTTCCTGCACGGGAGCTGCAGGGTATGAC
GCAGCATGTGGTGCCGATTGCTCTGAAAGTACTGGAGGGGCTTAAAGCAG
TGCTTGGTTTGAAGGAAGGGGGAAATGGGAATGGACAAGAGGGGATTAGC
GGGGAGATACCACGATAG
back to top
Synonyms
Publications