jgi.p|Nanoce1779_2|574781, mRNA_950 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574781
Unique Name	mRNA_950
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1919
Alignment location	scaffold_2:831870..833788 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574867
Track	FilteredModels2
ProteinId	574781

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:831870..833788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574781	gene_950	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574781	mRNA_950-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_950	CDS_950	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:831870..833788-
coding sequence from alignment at scaffold_2:831870..833788-

mRNA sequence

>mRNA_950 ID=mRNA_950|Name=jgi.p|Nanoce1779_2|574781|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp
GGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGGAGAAAAAAGGGC
GAACACCCTAGCTGGCCTCTATACGAGCAGCAGCGTTGACAGAAAGGGGA
AAGTAGGATCAGAAGGTGGAATAGTAGCGCCGCAGCCTTCGTCGTCGGCC
CCATCGCGAATGCAAAAGGATGAACCGATGACGGTGTTTGTGGGCAAGCT
GCCTCCCAATGTCCCCGATCAATTTATTTTTTCCCTGCTCGAACAATGCG
GCCGGGTCCTAGAATGGAAGCGTGTGGAGGGGAAGAACTTTGGATTTTGT
TTGTACGCACGACCGGCACAAGCTCGACGGTGTGTAAATTTGATGAACGG
TTTCAAGGTCGACTACCAGGAAATAGTGACAAAAGTTGGAAAAAAAGAGG
TTGCAATTCTGGCCGAGCTGGAGGTATCGGAGGAAGAAGCGGCCCAGGAT
AAGGTTGCGAAGGAACGGTTGCAGTATGTGATACAAAGGAGGAATTTGGG
GGCGCGCCAGGGTCTTGCACGGGAGGAGGACACCGCTGCAACTGCTGGGG
GCCTAGCCTCAGCAGCAGAATTAGGAGTAGTAACAGGAGGAGGAGGAGCA
GCAGCAGCAACGGGAGAAGCGGAGGTGGGAAGGGAAGAGCACAATAGTAG
GACGGGGGCATCATTGATGGTGGAGAGGATGACGCTGGCGGCAGGTTTGC
CTCCGTCGCCCGAGACTGTGAGAGAGGGACGGGCGCAAAACACGGTAGTC
TTGAGTGAGGTCGAGAGGTTCCGAATGGTGGAAGCGCAGCGAGATCGAAA
AAAGGAAGAGGAGCGATTAAGAGATCTCAGGAGGAGGGTTGAGGAGGCAG
AGAGGATTGAGCGGCGACAGAAAGAGAGGGAGGCACGCGAGGAGGAGGCT
GTGGCAGCGGTGTCTGCGAAGGAAGCTGCAGCGTTGGAGAGGGAGAAGGA
GATTGAGAAGGAGCGGGAGAGGAGAGAAAGCAGCAGGCATATACGAGCGA
GTCATAGTCGAAGTAGAAGTCAGGAACGTGGTCATTGTCGTCGAAGGAGC
AAGGAAGACCGCAATGGCCGCAGCAGAAGTAGCAGCAGCAGTAGCAGCGG
TTCATCCTCGCGCTCACGAGAGCGTTCTAAGCGGGGTCGGTCTAGGGATG
AGGAGCGGGGGGAGGGATTCAAGGAGGAAAATGAAGAGAAAGAGGACCAC
AGACGCAGCAACAGCAAGAAGCCGGCGGTTGATGTTAGTGCCGATGGTGA
TTGTTCGTCTGCTGCCGGCACCATGTCGACCATTGCATCGCGGCCTCTTC
AAGTGAAAAGCCGTGGGAGTTGGACGATTGACCTGCCCGCCAAGTCCCGC
GGGGCTGGCAATATTGGTAAGGCGAAGGTCAGTAGCCGTAGCCGGGTGGC
GACCTCGGTATTTCAGGCTGGGTACGAGGACGAGGAAGAGAGAGGGACGA
AATTGAGGGTGCCCGTCCCCCTTGACTACGATCACGACGACAGGCACCCC
GAGCATTCCACCTCTACCGAGAACACCTCAAAGGGTGGCCCTGCTCCGAT
ATCCGGGATGCTTTCTGAACGCCAAAAGCGGCTGGTGAGAGAGATTCCAC
AGGACAAGGATGCTCTGTTTGACTACCCCGTGGACTGGGCTACTGTGGAT
GCCCAGAACCTGGTGCCGGTTCGGCTTCGGGCCTGGGTGGTCAAGAAGAT
CAAGGAGCTGCTCGGAGAGGAAGAACCCACGCTTATTGATTATATTTGCT
CCAAACTCCTGACTCATTGTCGACCTGATGACCTCCTTGCGGAGCTGCGG
TTGGTGCTTGAGGATGATGCGGACATCTTCACTCAAAAACTCTGGCGGAT
CATGATTTACTATACCATTGAAAGCCGGAAGGATTAACATACGAAAAAGA
AACAAAAGCTATGAAGGAA

protein sequence of jgi.p|Nanoce1779_2|574781

>mRNA_950-protein ID=mRNA_950-protein|Name=jgi.p|Nanoce1779_2|574781|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MQKDEPMTVFVGKLPPNVPDQFIFSLLEQCGRVLEWKRVEGKNFGFCLYA
RPAQARRCVNLMNGFKVDYQEIVTKVGKKEVAILAELEVSEEEAAQDKVA
KERLQYVIQRRNLGARQGLAREEDTAATAGGLASAAELGVVTGGGGAAAA
TGEAEVGREEHNSRTGASLMVERMTLAAGLPPSPETVREGRAQNTVVLSE
VERFRMVEAQRDRKKEEERLRDLRRRVEEAERIERRQKEREAREEEAVAA
VSAKEAAALEREKEIEKERERRESSRHIRASHSRSRSQERGHCRRRSKED
RNGRSRSSSSSSSGSSSRSRERSKRGRSRDEERGEGFKEENEEKEDHRRS
NSKKPAVDVSADGDCSSAAGTMSTIASRPLQVKSRGSWTIDLPAKSRGAG
NIGKAKVSSRSRVATSVFQAGYEDEEERGTKLRVPVPLDYDHDDRHPEHS
TSTENTSKGGPAPISGMLSERQKRLVREIPQDKDALFDYPVDWATVDAQN
LVPVRLRAWVVKKIKELLGEEEPTLIDYICSKLLTHCRPDDLLAELRLVL
EDDADIFTQKLWRIMIYYTIESRKD*

mRNA from alignment at scaffold_2:831870..833788-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_950 ID=mRNA_950|Name=jgi.p|Nanoce1779_2|574781|organism=Nannochloropsis oceanica|type=mRNA|length=1919bp|location=Sequence derived from alignment at scaffold_2:831870..833788- (Nannochloropsis oceanica)
GGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGGAGAAAAAAGGGC
GAACACCCTAGCTGGCCTCTATACGAGCAGCAGCGTTGACAGAAAGGGGA
AAGTAGGATCAGAAGGTGGAATAGTAGCGCCGCAGCCTTCGTCGTCGGCC
CCATCGCGAATGCAAAAGGATGAACCGATGACGGTGTTTGTGGGCAAGCT
GCCTCCCAATGTCCCCGATCAATTTATTTTTTCCCTGCTCGAACAATGCG
GCCGGGTCCTAGAATGGAAGCGTGTGGAGGGGAAGAACTTTGGATTTTGT
TTGTACGCACGACCGGCACAAGCTCGACGGTGTGTAAATTTGATGAACGG
TTTCAAGGTCGACTACCAGGAAATAGTGACAAAAGTTGGAAAAAAAGAGG
TTGCAATTCTGGCCGAGCTGGAGGTATCGGAGGAAGAAGCGGCCCAGGAT
AAGGTTGCGAAGGAACGGTTGCAGTATGTGATACAAAGGAGGAATTTGGG
GGCGCGCCAGGGTCTTGCACGGGAGGAGGACACCGCTGCAACTGCTGGGG
GCCTAGCCTCAGCAGCAGAATTAGGAGTAGTAACAGGAGGAGGAGGAGCA
GCAGCAGCAACGGGAGAAGCGGAGGTGGGAAGGGAAGAGCACAATAGTAG
GACGGGGGCATCATTGATGGTGGAGAGGATGACGCTGGCGGCAGGTTTGC
CTCCGTCGCCCGAGACTGTGAGAGAGGGACGGGCGCAAAACACGGTAGTC
TTGAGTGAGGTCGAGAGGTTCCGAATGGTGGAAGCGCAGCGAGATCGAAA
AAAGGAAGAGGAGCGATTAAGAGATCTCAGGAGGAGGGTTGAGGAGGCAG
AGAGGATTGAGCGGCGACAGAAAGAGAGGGAGGCACGCGAGGAGGAGGCT
GTGGCAGCGGTGTCTGCGAAGGAAGCTGCAGCGTTGGAGAGGGAGAAGGA
GATTGAGAAGGAGCGGGAGAGGAGAGAAAGCAGCAGGCATATACGAGCGA
GTCATAGTCGAAGTAGAAGTCAGGAACGTGGTCATTGTCGTCGAAGGAGC
AAGGAAGACCGCAATGGCCGCAGCAGAAGTAGCAGCAGCAGTAGCAGCGG
TTCATCCTCGCGCTCACGAGAGCGTTCTAAGCGGGGTCGGTCTAGGGATG
AGGAGCGGGGGGAGGGATTCAAGGAGGAAAATGAAGAGAAAGAGGACCAC
AGACGCAGCAACAGCAAGAAGCCGGCGGTTGATGTTAGTGCCGATGGTGA
TTGTTCGTCTGCTGCCGGCACCATGTCGACCATTGCATCGCGGCCTCTTC
AAGTGAAAAGCCGTGGGAGTTGGACGATTGACCTGCCCGCCAAGTCCCGC
GGGGCTGGCAATATTGGTAAGGCGAAGGTCAGTAGCCGTAGCCGGGTGGC
GACCTCGGTATTTCAGGCTGGGTACGAGGACGAGGAAGAGAGAGGGACGA
AATTGAGGGTGCCCGTCCCCCTTGACTACGATCACGACGACAGGCACCCC
GAGCATTCCACCTCTACCGAGAACACCTCAAAGGGTGGCCCTGCTCCGAT
ATCCGGGATGCTTTCTGAACGCCAAAAGCGGCTGGTGAGAGAGATTCCAC
AGGACAAGGATGCTCTGTTTGACTACCCCGTGGACTGGGCTACTGTGGAT
GCCCAGAACCTGGTGCCGGTTCGGCTTCGGGCCTGGGTGGTCAAGAAGAT
CAAGGAGCTGCTCGGAGAGGAAGAACCCACGCTTATTGATTATATTTGCT
CCAAACTCCTGACTCATTGTCGACCTGATGACCTCCTTGCGGAGCTGCGG
TTGGTGCTTGAGGATGATGCGGACATCTTCACTCAAAAACTCTGGCGGAT
CATGATTTACTATACCATTGAAAGCCGGAAGGATTAACATACGAAAAAGA
AACAAAAGCTATGAAGGAA

Coding sequence (CDS) from alignment at scaffold_2:831870..833788-

>mRNA_950 ID=mRNA_950|Name=jgi.p|Nanoce1779_2|574781|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_2:831870..833788- (Nannochloropsis oceanica)
ATGCAAAAGGATGAACCGATGACGGTGTTTGTGGGCAAGCTGCCTCCCAA
TGTCCCCGATCAATTTATTTTTTCCCTGCTCGAACAATGCGGCCGGGTCC
TAGAATGGAAGCGTGTGGAGGGGAAGAACTTTGGATTTTGTTTGTACGCA
CGACCGGCACAAGCTCGACGGTGTGTAAATTTGATGAACGGTTTCAAGGT
CGACTACCAGGAAATAGTGACAAAAGTTGGAAAAAAAGAGGTTGCAATTC
TGGCCGAGCTGGAGGTATCGGAGGAAGAAGCGGCCCAGGATAAGGTTGCG
AAGGAACGGTTGCAGTATGTGATACAAAGGAGGAATTTGGGGGCGCGCCA
GGGTCTTGCACGGGAGGAGGACACCGCTGCAACTGCTGGGGGCCTAGCCT
CAGCAGCAGAATTAGGAGTAGTAACAGGAGGAGGAGGAGCAGCAGCAGCA
ACGGGAGAAGCGGAGGTGGGAAGGGAAGAGCACAATAGTAGGACGGGGGC
ATCATTGATGGTGGAGAGGATGACGCTGGCGGCAGGTTTGCCTCCGTCGC
CCGAGACTGTGAGAGAGGGACGGGCGCAAAACACGGTAGTCTTGAGTGAG
GTCGAGAGGTTCCGAATGGTGGAAGCGCAGCGAGATCGAAAAAAGGAAGA
GGAGCGATTAAGAGATCTCAGGAGGAGGGTTGAGGAGGCAGAGAGGATTG
AGCGGCGACAGAAAGAGAGGGAGGCACGCGAGGAGGAGGCTGTGGCAGCG
GTGTCTGCGAAGGAAGCTGCAGCGTTGGAGAGGGAGAAGGAGATTGAGAA
GGAGCGGGAGAGGAGAGAAAGCAGCAGGCATATACGAGCGAGTCATAGTC
GAAGTAGAAGTCAGGAACGTGGTCATTGTCGTCGAAGGAGCAAGGAAGAC
CGCAATGGCCGCAGCAGAAGTAGCAGCAGCAGTAGCAGCGGTTCATCCTC
GCGCTCACGAGAGCGTTCTAAGCGGGGTCGGTCTAGGGATGAGGAGCGGG
GGGAGGGATTCAAGGAGGAAAATGAAGAGAAAGAGGACCACAGACGCAGC
AACAGCAAGAAGCCGGCGGTTGATGTTAGTGCCGATGGTGATTGTTCGTC
TGCTGCCGGCACCATGTCGACCATTGCATCGCGGCCTCTTCAAGTGAAAA
GCCGTGGGAGTTGGACGATTGACCTGCCCGCCAAGTCCCGCGGGGCTGGC
AATATTGGTAAGGCGAAGGTCAGTAGCCGTAGCCGGGTGGCGACCTCGGT
ATTTCAGGCTGGGTACGAGGACGAGGAAGAGAGAGGGACGAAATTGAGGG
TGCCCGTCCCCCTTGACTACGATCACGACGACAGGCACCCCGAGCATTCC
ACCTCTACCGAGAACACCTCAAAGGGTGGCCCTGCTCCGATATCCGGGAT
GCTTTCTGAACGCCAAAAGCGGCTGGTGAGAGAGATTCCACAGGACAAGG
ATGCTCTGTTTGACTACCCCGTGGACTGGGCTACTGTGGATGCCCAGAAC
CTGGTGCCGGTTCGGCTTCGGGCCTGGGTGGTCAAGAAGATCAAGGAGCT
GCTCGGAGAGGAAGAACCCACGCTTATTGATTATATTTGCTCCAAACTCC
TGACTCATTGTCGACCTGATGACCTCCTTGCGGAGCTGCGGTTGGTGCTT
GAGGATGATGCGGACATCTTCACTCAAAAACTCTGGCGGATCATGATTTA
CTATACCATTGAAAGCCGGAAGGATTAA

Synonyms

Publications