jgi.p|Nanoce1779_2|674008, mRNA_9499 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674008
Unique NamemRNA_9499
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1153
Alignment locationscaffold_34:172039..173792 -

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Properties
Property NameValue
TranscriptId674094
TrackFilteredModels2
ProteinId674008
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:172039..173792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674008gene_9499Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674008mRNA_9499-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9499CDS_9499Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9499 ID=mRNA_9499|Name=jgi.p|Nanoce1779_2|674008|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp
GCGGTCGCTTCTTCTCCATTTTCTTCTTCGTCTCGCTAAAGTAGACCGAC
ACCGAGACACCATCCGTTGCAATCTGCCGATGAAACACGCCTATTCCAAA
GGCCTCTGACTCTAAACGTCTCGTTCCATGCAGTGCATACAAGATCAACA
TCCGCGCTCAAATTATTTTTACTCACTCCTCTCAGACGCCTCAACCAGAT
AAGATATTCTGCCTCCCACTCTGCCTCGTGTATCTCTTCCGGGTTACCAC
TCACCACGTTCTTGAGTAATTTACATAAAGCCTTGTCGCCAACCGCTACA
AAATGGCGCTTGACACTGGACACTGGAGTAATTGAACAGCCTCGATAGCC
AGGATTCCCTCCCTTCTTTGCTTGCGTGTTGGGATTGTCCACTCTTTCTG
AGTGTACCGCTAGATGCTTTGATGATATTCGTGCAATATGTGGTATAGCT
ACGGGAGAAGGAGCTCTTCCACAGAGGTCTCATCCATGACACCCAGGCAG
GAGAGACCCTCCAGCTTTAGAAGCACTCGACATCAGATTAGTTTGCTTGC
TGTCTGACACATACCCAAAGGAGCATTCAAATACATTAGCACATACTATG
ATAGAAGTAGATGTCACCATGCCGCCCGCCCCGCATGACGGGATAGCTGC
CGGCATCAGGCCACTGGCGTTTTCGCGGGACGATGAGGCCATCCCGCTCT
ACAAGCTTGCTCTAACAGGAAGGCAGCAGCGGCAGTGGCTCCGCAGCGAG
AATCATCTTCGCTCGGCGTTGTTGCAAGACGGCGCCGCACGGGCTGGCGT
AGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGTAAAGGCGTTC
GGGTCAACTGCGTGGCTCCCGGCATCGTCTCCACAGAAACCCATTGGTGT
GGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTACGTT
ACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAGGTCC
CTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTATATACGGGGAG
TTGCCAGCGAAGGCAAAGCTCTAGGGAACAGGAGAGGAGAGGACATCCAC
AGAAAGAATTAAAGCAAGCTCGTGATGAAGCGCTTGGTGGGTTGGGACTA
TCC
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protein sequence of jgi.p|Nanoce1779_2|674008

>mRNA_9499-protein ID=mRNA_9499-protein|Name=jgi.p|Nanoce1779_2|674008|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MIEVDVTMPPAPHDGIAAGIRPLAFSRDDEAIPLYKLALTGRQQRQWLRS
ENHLRSALLQDGAARAGVENLTKSMALEWVGKGVRVNCVAPGIVSTETHW
CGTAKKVSSSSRTRLFTLPAKLIGVDGGMGQSKVPLRPQDHEAALWPIYG
ELPAKAKL*
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mRNA from alignment at scaffold_34:172039..173792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9499 ID=mRNA_9499|Name=jgi.p|Nanoce1779_2|674008|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp|location=Sequence derived from alignment at scaffold_34:172039..173792- (Nannochloropsis oceanica)
GCGGTCGCTTCTTCTCCATTTTCTTCTTCGTCTCGCTAAAGTAGACCGAC
ACCGAGACACCATCCGTTGCAATCTGCCGATGAAACACGCCTATTCCAAA
GGCCTCTGACTCTAAACGTCTCGTTCCATGCAGTGCATACAAGATCAACA
TCCGCGCTCAAATTATTTTTACTCACTCCTCTCAGACGCCTCAACCAGAT
AAGATATTCTGCCTCCCACTCTGCCTCGTGTATCTCTTCCGGGTTACCAC
TCACCACGTTCTTGAGTAATTTACATAAAGCCTTGTCGCCAACCGCTACA
AAATGGCGCTTGACACTGGACACTGGAGTAATTGAACAGCCTCGATAGCC
AGGATTCCCTCCCTTCTTTGCTTGCGTGTTGGGATTGTCCACTCTTTCTG
AGTGTACCGCTAGATGCTTTGATGATATTCGTGCAATATGTGGTATAGCT
ACGGGAGAAGGAGCTCTTCCACAGAGGTCTCATCCATGACACCCAGGCAG
GAGAGACCCTCCAGCTTTAGAAGCACTCGACATCAGATTAGTTTGCTTGC
TGTCTGACACATACCCAAAGGAGCATTCAAATACATTAGCACATACTATG
ATAGAAGTAGATGTCACCATGCCGGTGGCAAAGCGCCTAGAGGCGAATAA
ACCCCTAAAAAATAAAAACAATAAAAAAACTTAAATAACTTTCTGTACAG
TCCGTCAACCCTCCCTCCCTCCCTCCTTACGGACTGTACAGAAAGTTATT
TAAGTTTTTTGTTGTGTTTAATTTTTTGGGGGTTTGTTAACCACTAGACG
TTTTGCCACCGTCATGGGGACATCGACTTCTATCATATTTTGATAACCAA
AATAAGCCCGCCCCGCATGACGGGATAGCTGCCGGCATCAGGCCACTGGC
GTTTTCGCGGGACGATGAGGCCATCCCGCTCTACAAGCTTGCTCTAACAG
GAAGGCAGCAGCGGCAGTGGCTCCGCAGCGAGAATCATCTTCGCTCGGCG
TTGTTGCAAGAGTGAATTTCCCATAGCGGCACACAGGTGGGTCCTTCTTG
TCTCTTTCGCGCACTCCTTTTGACCCATTCGTTCCTTTTTCACCTTTTCC
GGCGTCCCTTAGGAATTTTCGATGCCACACAAGCATTCATGAGATAAGAT
ATCCCTCTTCTCACTCTTTACCCTCCATCCTGTCCCCAATCAGCGGCGCC
GCACGGGCTGGCGTAGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGT
GGGTAAAGGCGTTCGGGTCAACTGCGTGGCTCCCGGCATCGTCTCCACAG
AAAGTGGCTTTGTCAATAATGGTTATGTATACTTATGCAAATTTCGTCCT
CCATGCATCCATCTTCTTTTGCTTAATCTTCCTTTCTATTCTTCTTGCTC
AATATATATTCCTGCATTGCTCTTTATGAAACCGATCCTCAAGCGAAATG
GCCACTGCCTTTCTCGCTTCCGTCCTCCATGCGATTCTAGCCCATTGGTG
TGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTACGT
TACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAGGTC
CCTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTATATACGGGGA
GTTGCCAGCGAAGGCAAAGCTCTAGGGAACAGGAGAGGAGAGGACATCCA
CAGAAAGAATTAAAGCAAGCTCGTGATGAAGCGCTTGGTGGGTTGGGACT
ATCC
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Coding sequence (CDS) from alignment at scaffold_34:172039..173792-

>mRNA_9499 ID=mRNA_9499|Name=jgi.p|Nanoce1779_2|674008|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_34:172039..173792- (Nannochloropsis oceanica)
CCCATTGGTGTGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGG
CTGTTTACGTTACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCA
GAGCAAGGTCCCTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTA
TATACGGGGAGTTGCCAGCGAAGGCAAAGCTCTAGCGGCGCCGCACGGGC
TGGCGTAGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGTAAAG
GCGTTCGGGTCAACTGCGTGGCTCCCGGCATCGTCTCCACAGAAACCCGC
CCCGCATGACGGGATAGCTGCCGGCATCAGGCCACTGGCGTTTTCGCGGG
ACGATGAGGCCATCCCGCTCTACAAGCTTGCTCTAACAGGAAGGCAGCAG
CGGCAGTGGCTCCGCAGCGAGAATCATCTTCGCTCGGCGTTGTTGCAAGA
ATGATAGAAGTAGATGTCACCATGCCGCCCATTGGTGTGGCACCGCCAAG
AAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTACGTTACCGGCCAAGCT
CATAGGGGTGGATGGAGGAATGGGCCAGAGCAAGGTCCCTCTGCGGCCAC
AAGACCACGAAGCGGCACTATGGCCTATATACGGGGAGTTGCCAGCGAAG
GCAAAGCTCTAGCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACCAAGA
GCATGGCCTTGGAGTGGGTGGGTAAAGGCGTTCGGGTCAACTGCGTGGCT
CCCGGCATCGTCTCCACAGAAACCCGCCCCGCATGACGGGATAGCTGCCG
GCATCAGGCCACTGGCGTTTTCGCGGGACGATGAGGCCATCCCGCTCTAC
AAGCTTGCTCTAACAGGAAGGCAGCAGCGGCAGTGGCTCCGCAGCGAGAA
TCATCTTCGCTCGGCGTTGTTGCAAGAATGATAGAAGTAGATGTCACCAT
GCCGCCCATTGGTGTGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGAC
GCGGCTGTTTACGTTACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGG
GCCAGAGCAAGGTCCCTCTGCGGCCACAAGACCACGAAGCGGCACTATGG
CCTATATACGGGGAGTTGCCAGCGAAGGCAAAGCTCTAGCGGCGCCGCAC
GGGCTGGCGTAGAGAACCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGT
AAAGGCGTTCGGGTCAACTGCGTGGCTCCCGGCATCGTCTCCACAGAAAC
CCGCCCCGCATGACGGGATAGCTGCCGGCATCAGGCCACTGGCGTTTTCG
CGGGACGATGAGGCCATCCCGCTCTACAAGCTTGCTCTAACAGGAAGGCA
GCAGCGGCAGTGGCTCCGCAGCGAGAATCATCTTCGCTCGGCGTTGTTGC
AAGAATGATAGAAGTAGATGTCACCATGCCGCCCATTGGTGTGGCACCGC
CAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTACGTTACCGGCCA
AGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAGGTCCCTCTGCGG
CCACAAGACCACGAAGCGGCACTATGGCCTATATACGGGGAGTTGCCAGC
GAAGGCAAAGCTCTAGCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACC
AAGAGCATGGCCTTGGAGTGGGTGGGTAAAGGCGTTCGGGTCAACTGCGT
GGCTCCCGGCATCGTCTCCACAGAAACCCGCCCCGCATGACGGGATAGCT
GCCGGCATCAGGCCACTGGCGTTTTCGCGGGACGATGAGGCCATCCCGCT
CTACAAGCTTGCTCTAACAGGAAGGCAGCAGCGGCAGTGGCTCCGCAGCG
AGAATCATCTTCGCTCGGCGTTGTTGCAAGAATGATAGAAGTAGATGTCA
CCATGCCG
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Synonyms
Publications