jgi.p|Nanoce1779_2|606172, mRNA_9494 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606172
Unique NamemRNA_9494
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length932
Alignment locationscaffold_34:134068..134999 +

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Properties
Property NameValue
TranscriptId606258
TrackFilteredModels2
ProteinId606172
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:134068..134999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606172gene_9494Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606172mRNA_9494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9494CDS_9494Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9494 ID=mRNA_9494|Name=jgi.p|Nanoce1779_2|606172|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
TCTAAGACTCGTCCATGTATATGCATACACACCACTTGTTGTTTCTTGGT
CTCATATTTTGTCTCCTTCCTCTGTCATCAATTGAATTTCTTACATGGTT
CCCTTTCCCTTTCCCCGATTAATTCCTGCCTTGGCTCCCCACCCCCAGAG
GAACGACAGGTGGCTGCTTTCTTCATTTACTTCATCGAACGGCAGACATG
TATTTAATCCTTTTATCCTTGCTCTCAGGTGGATACGCGCGTGTATTTGC
ATGTCGCAAGATAGGAAGAACCTCATCGCGCGGTGGAGTGGAGAGTGCGA
GTGGGAAAGTTTAGCGAGGGGTCAGTAAACACAAGGGCAGGGCTACCTCC
CTTCGACCATAAGCAATACGAAGGGCGTTCGCGTTCCCACCCTTATTCCC
TCCCTTCCTCCCGTCCTCCGTCTCCCCCTTGCCCTTGACTAAGCTCCAAG
TTCTCACCGCGTTCTCTTTCCTATCTCTCTCTGCCTCAGCCATGAGTGAA
TGGTGGTTGTATGTCTCCGACTTCCTTTCTCCTCTTGTTCTGGGCATGCG
CTGACCCTCCCCCTCCTCCTCATCCTCTTCTTCGAAGATCCAGCACCACT
TAACCCTCTCATTATTTTCGTTTCAAGGAGTGTTCTTACTCCCTCCATCC
CTCTCTCATCCTCCCTCCCTCCGACTGACATATATTTTTTGTGCAATTGC
TATGGATTTGGGTGCTTTTTTGGCTCGATACCATGTTGAGATGTTGCCAC
TTATGACTGTTGTCATGTGTGTTTGTTGTTGTTGTTGTTGTAATTTTCCT
CGTCGATCTCAATGCCCTTCCATCCCCTCTCTCTCTTCCAGCCCGTCTTC
TTCTCATCATCCTCCTCCTTGTCACTTCGAAGCTCACTTGTTGTTGTAAT
TGCTGCTGCTGTTGTTGCTACTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|606172

>mRNA_9494-protein ID=mRNA_9494-protein|Name=jgi.p|Nanoce1779_2|606172|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MVVVCLRLPFSSCSGHALTLPLLLILFFEDPAPLNPLIIFVSRSVLTPSI
PLSSSLPPTDIYFLCNCYGFGCFFGSIPC*
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mRNA from alignment at scaffold_34:134068..134999+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9494 ID=mRNA_9494|Name=jgi.p|Nanoce1779_2|606172|organism=Nannochloropsis oceanica|type=mRNA|length=932bp|location=Sequence derived from alignment at scaffold_34:134068..134999+ (Nannochloropsis oceanica)
TCTAAGACTCGTCCATGTATATGCATACACACCACTTGTTGTTTCTTGGT
CTCATATTTTGTCTCCTTCCTCTGTCATCAATTGAATTTCTTACATGGTT
CCCTTTCCCTTTCCCCGATTAATTCCTGCCTTGGCTCCCCACCCCCAGAG
GAACGACAGGTGGCTGCTTTCTTCATTTACTTCATCGAACGGCAGACATG
TATTTAATCCTTTTATCCTTGCTCTCAGGTGGATACGCGCGTGTATTTGC
ATGTCGCAAGATAGGAAGAACCTCATCGCGCGGTGGAGTGGAGAGTGCGA
GTGGGAAAGTTTAGCGAGGGGTCAGTAAACACAAGGGCAGGGCTACCTCC
CTTCGACCATAAGCAATACGAAGGGCGTTCGCGTTCCCACCCTTATTCCC
TCCCTTCCTCCCGTCCTCCGTCTCCCCCTTGCCCTTGACTAAGCTCCAAG
TTCTCACCGCGTTCTCTTTCCTATCTCTCTCTGCCTCAGCCATGAGTGAA
TGGTGGTTGTATGTCTCCGACTTCCTTTCTCCTCTTGTTCTGGGCATGCG
CTGACCCTCCCCCTCCTCCTCATCCTCTTCTTCGAAGATCCAGCACCACT
TAACCCTCTCATTATTTTCGTTTCAAGGAGTGTTCTTACTCCCTCCATCC
CTCTCTCATCCTCCCTCCCTCCGACTGACATATATTTTTTGTGCAATTGC
TATGGATTTGGGTGCTTTTTTGGCTCGATACCATGTTGAGATGTTGCCAC
TTATGACTGTTGTCATGTGTGTTTGTTGTTGTTGTTGTTGTAATTTTCCT
CGTCGATCTCAATGCCCTTCCATCCCCTCTCTCTCTTCCAGCCCGTCTTC
TTCTCATCATCCTCCTCCTTGTCACTTCGAAGCTCACTTGTTGTTGTAAT
TGCTGCTGCTGTTGTTGCTACTGCTGCTGCTG
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Coding sequence (CDS) from alignment at scaffold_34:134068..134999+

>mRNA_9494 ID=mRNA_9494|Name=jgi.p|Nanoce1779_2|606172|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_34:134068..134999+ (Nannochloropsis oceanica)
ATGGTGGTTGTATGTCTCCGACTTCCTTTCTCCTCTTGTTCTGGGCATGC
GCTGACCCTCCCCCTCCTCCTCATCCTCTTCTTCGAAGATCCAGCACCAC
TTAACCCTCTCATTATTTTCGTTTCAAGGAGTGTTCTTACTCCCTCCATC
CCTCTCTCATCCTCCCTCCCTCCGACTGACATATATTTTTTGTGCAATTG
CTATGGATTTGGGTGCTTTTTTGGCTCGATACCATGTTGA
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Synonyms
Publications