jgi.p|Nanoce1779_2|268107, mRNA_9493 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|268107
Unique Name	mRNA_9493
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2158
Alignment location	scaffold_34:129202..131359 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	268193
Track	FilteredModels2
ProteinId	268107

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:129202..131359 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|268107	gene_9493	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|268107	mRNA_9493-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9493	CDS_9493	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:129202..131359+
coding sequence from alignment at scaffold_34:129202..131359+

mRNA sequence

>mRNA_9493 ID=mRNA_9493|Name=jgi.p|Nanoce1779_2|268107|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp
AAACGACGTTTCCCGTCTCGGTTCGTTCATACTTCCATACACCCGTCACT
TTTCCTCTCTTTAATTCACTGTTTTCGTCATCAATCCTCCCTCCTCGTCT
TTAGCTTCGCGGCCATGCCTCTCGAGCCCCATCCTCCTTGTGTGCCGACG
TGGGCCCCATGTGGGTGATACTGAAAATACTACCCATTGTTGCCAGGACC
ATCTGGATCAAAAGTTGTATTTCTCCCATGAGCATCTTAGGGGGTTAGGG
TTAGGGTTACTTTATATTTTATTCTATCGCCAATGTCTTGGCCGCTCGCT
CGGGTTCTTCCTCAAAGCACACTCACGGGATGGTGCGTGTGTAAAGAGGT
TTGGCAGAGTCCAGGAGCGTGAATGAAGAACGTATCGCTTTTCCGCGACG
CCGGAACGCCCCGTCTTGCCTTCGACGACTGCAGGCCACAATTGTCCCTT
GCCTTATCTTGCCATCAGCGTATGGACATTAACCACATCGATCTCTCTCA
AAGTGTCATCCCCCTCCTCCAAAAAGCTGTAGGTCCAACGCAAGAATGCA
TAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGTCGCCT
CTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTTTGCCA
ACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTTCCTGC
TTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTCGTTTG
GAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAGCAGCA
GCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGAGCACC
CACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGGCGGCG
GCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCCCTCCT
TTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCTGGAGG
TGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCACCAGCA
GCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAACCCTCC
CTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCCATGGA
ATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCTGTGCT
ATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGGCAAGG
CTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATGGAGGG
GATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGAAGTCA
CGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAGAGCTG
GAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACAGGGGC
GTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCAGTTTC
GGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTATTGTG
GAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAGCGGTT
GCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGGAGGGA
TGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGGTGCGG
ATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACGGCGGA
TGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGACGACGG
CCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGGAAAGA
GGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGAGTACG
GTTTCTTCCGCTGCCCATTTCGGTCACCGGAGAGGGGCAAGAAGAAGGAG
TACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAAGGAGG
GGAGAAAATGAATAATGGAAACATGAATGATACCTTGAAAAGCATGAGAA
AGGTACGTGACATAAAGAAAGAACTATTAACGTACAGAGTAGGGTGGTGG
CTGGCGAT

protein sequence of jgi.p|Nanoce1779_2|268107

>mRNA_9493-protein ID=mRNA_9493-protein|Name=jgi.p|Nanoce1779_2|268107|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MHRTAQPPSSSSPAPAVASAPTPAATAFSFGGTLPTSTNQFTPASSLAPL
PASAPGATAAPAPSPFSFGGGGGGGAGGGATAAAAAPSLTTTTATTPATG
APTPTPGPTLSFAFGGGGGGGSSSSSSSNASILPPFPTLTSPASTAAPSS
GGGSGGALTLPNVSSSTSSTSNSTGKSQPCALQPSLHPALAKDEAGRRFA
MEFQHVALARIHEELMLCYREDLERHEKDLQEMARLEAGVEEGREGWREM
EGMVGGLREGWESVWREVTRVEGKQAVIDGELRELEIMVGVGRGAGAGGT
GAWQQQQQQLLLQQQLQFRQQQQGGGGGGGVDVIVEERAALYGAAVRVDE
RLRRVMGATSELSERLGGMLERRLSDDGSFSQVVRIVNAHQHALEWLART
ADELAREGEEVEWRVRTTAKLSRLMPEGEGGDGERGGGGGGSTFGGKDAG
VRFLPLPISVTGEGQEEGVQQGQRQPEQQQQQQQQQQILGTGGGFFGGR*

mRNA from alignment at scaffold_34:129202..131359+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9493 ID=mRNA_9493|Name=jgi.p|Nanoce1779_2|268107|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp|location=Sequence derived from alignment at scaffold_34:129202..131359+ (Nannochloropsis oceanica)
AAACGACGTTTCCCGTCTCGGTTCGTTCATACTTCCATACACCCGTCACT
TTTCCTCTCTTTAATTCACTGTTTTCGTCATCAATCCTCCCTCCTCGTCT
TTAGCTTCGCGGCCATGCCTCTCGAGCCCCATCCTCCTTGTGTGCCGACG
TGGGCCCCATGTGGGTGATACTGAAAATACTACCCATTGTTGCCAGGACC
ATCTGGATCAAAAGTTGTATTTCTCCCATGAGCATCTTAGGGGGTTAGGG
TTAGGGTTACTTTATATTTTATTCTATCGCCAATGTCTTGGCCGCTCGCT
CGGGTTCTTCCTCAAAGCACACTCACGGGATGGTGCGTGTGTAAAGAGGT
TTGGCAGAGTCCAGGAGCGTGAATGAAGAACGTATCGCTTTTCCGCGACG
CCGGAACGCCCCGTCTTGCCTTCGACGACTGCAGGCCACAATTGTCCCTT
GCCTTATCTTGCCATCAGCGTATGGACATTAACCACATCGATCTCTCTCA
AAGTGTCATCCCCCTCCTCCAAAAAGCTGTAGGTCCAACGCAAGAATGCA
TAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGTCGCCT
CTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTTTGCCA
ACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTTCCTGC
TTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTCGTTTG
GAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAGCAGCA
GCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGAGCACC
CACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGGCGGCG
GCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCCCTCCT
TTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCTGGAGG
TGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCACCAGCA
GCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAACCCTCC
CTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCCATGGA
ATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCTGTGCT
ATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGGCAAGG
CTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATGGAGGG
GATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGAAGTCA
CGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAGAGCTG
GAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACAGGGGC
GTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCAGTTTC
GGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTATTGTG
GAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAGCGGTT
GCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGGAGGGA
TGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGGTGCGG
ATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACGGCGGA
TGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGACGACGG
CCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGGAAAGA
GGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGAGTACG
GTTTCTTCCGCTGCCCATTTCGGTCACCGGAGAGGGGCAAGAAGAAGGAG
TACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAAGGAGG
GGAGAAAATGAATAATGGAAACATGAATGATACCTTGAAAAGCATGAGAA
AGGTACGTGACATAAAGAAAGAACTATTAACGTACAGAGTAGGGTGGTGG
CTGGCGAT

Coding sequence (CDS) from alignment at scaffold_34:129202..131359+

>mRNA_9493 ID=mRNA_9493|Name=jgi.p|Nanoce1779_2|268107|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_34:129202..131359+ (Nannochloropsis oceanica)
ATGCATAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGT
CGCCTCTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTT
TGCCAACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTT
CCTGCTTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTC
GTTTGGAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAG
CAGCAGCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGA
GCACCCACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGG
CGGCGGCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCC
CTCCTTTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCT
GGAGGTGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCAC
CAGCAGCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAAC
CCTCCCTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCC
ATGGAATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCT
GTGCTATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGG
CAAGGCTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATG
GAGGGGATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGA
AGTCACGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAG
AGCTGGAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACA
GGGGCGTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCA
GTTTCGGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTA
TTGTGGAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAG
CGGTTGCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGG
AGGGATGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGG
TGCGGATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACG
GCGGATGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGAC
GACGGCCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGG
AAAGAGGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGA
GTACGGTTTCTTCCGCTGCCCATTTCGGTCACCGGAGAGGGGCAAGAAGA
AGGAGTACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAA

Synonyms

Publications