jgi.p|Nanoce1779_2|606167, mRNA_9492 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606167
Unique NamemRNA_9492
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length753
Alignment locationscaffold_34:128401..129153 +

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Properties
Property NameValue
TranscriptId606253
TrackFilteredModels2
ProteinId606167
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:128401..129153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606167gene_9492Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606167mRNA_9492-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9492CDS_9492Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9492 ID=mRNA_9492|Name=jgi.p|Nanoce1779_2|606167|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
GGGGCGGGAAGGGGGAGTGGCGGCGAGCACAACCAGCGGGGGGGGTGATC
ACATCGAGACCGTTGAGTGGGAAGGGAGGATACAAGGAGGAGCATGAAGC
AGCTGCTGCAGCAGCAGCGGAGATGAAGAAGCAGGCCTCATTTTCAGGGA
GGGGCGCCCGGCTGGACGGAAAGGCCCATGCAGGAGGAGAGGGGGAGGGA
GGGAAGGGTTTGGACGGGGGGGACTCTATGGACGTGTCAGGAGAGGGTGG
AGGAGGAGGAGGCGGGGAGGAAGGGCCAACTTCACCGCCGGTGTTTTTGG
GGAGAACCATTAGTGGACGAGCCTCTTTGTCGATGACTGAAGGGAGAGGT
TCCTCCCTCATCAGCCAGACAGGAGGGGGGAGCATAAGCTCAAGTTTGCG
CGCGTCGTCTTCTGTTTCCTACGGTTCGTCTTCGTCCTCGTCCTTGTCCT
CCTCGACGGCAGCAGCAGGAGCAGCAGCAGGAGCAGGAGGATACAAAAAG
CCGGGGGCACTTGACAATAAATACAGTAGTAAAAAGGGGTTTCGATCCTT
TGCGGGCCCGGGGAATAAGCTGGCGTAGACAATGAGGGGTAAGGAGGCGG
TGAGTGTTCTCAGGATGATGGGGAGGTACGGGGAGAAAGAGAAGCCGAGG
AGAAGGAGTTGACTGACAGGGTGCGTGCATGAGGGAAATAGAAGATGAGG
CGAGCGAAGGAAAGCAAATACACGACAAATATAGACAGGAATTACATGAT
GGG
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protein sequence of jgi.p|Nanoce1779_2|606167

>mRNA_9492-protein ID=mRNA_9492-protein|Name=jgi.p|Nanoce1779_2|606167|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MKKQASFSGRGARLDGKAHAGGEGEGGKGLDGGDSMDVSGEGGGGGGGEE
GPTSPPVFLGRTISGRASLSMTEGRGSSLISQTGGGSISSSLRASSSVSY
GSSSSSSLSSSTAAAGAAAGAGGYKKPGALDNKYSSKKGFRSFAGPGNKL
A*
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mRNA from alignment at scaffold_34:128401..129153+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9492 ID=mRNA_9492|Name=jgi.p|Nanoce1779_2|606167|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at scaffold_34:128401..129153+ (Nannochloropsis oceanica)
GGGGCGGGAAGGGGGAGTGGCGGCGAGCACAACCAGCGGGGGGGGTGATC
ACATCGAGACCGTTGAGTGGGAAGGGAGGATACAAGGAGGAGCATGAAGC
AGCTGCTGCAGCAGCAGCGGAGATGAAGAAGCAGGCCTCATTTTCAGGGA
GGGGCGCCCGGCTGGACGGAAAGGCCCATGCAGGAGGAGAGGGGGAGGGA
GGGAAGGGTTTGGACGGGGGGGACTCTATGGACGTGTCAGGAGAGGGTGG
AGGAGGAGGAGGCGGGGAGGAAGGGCCAACTTCACCGCCGGTGTTTTTGG
GGAGAACCATTAGTGGACGAGCCTCTTTGTCGATGACTGAAGGGAGAGGT
TCCTCCCTCATCAGCCAGACAGGAGGGGGGAGCATAAGCTCAAGTTTGCG
CGCGTCGTCTTCTGTTTCCTACGGTTCGTCTTCGTCCTCGTCCTTGTCCT
CCTCGACGGCAGCAGCAGGAGCAGCAGCAGGAGCAGGAGGATACAAAAAG
CCGGGGGCACTTGACAATAAATACAGTAGTAAAAAGGGGTTTCGATCCTT
TGCGGGCCCGGGGAATAAGCTGGCGTAGACAATGAGGGGTAAGGAGGCGG
TGAGTGTTCTCAGGATGATGGGGAGGTACGGGGAGAAAGAGAAGCCGAGG
AGAAGGAGTTGACTGACAGGGTGCGTGCATGAGGGAAATAGAAGATGAGG
CGAGCGAAGGAAAGCAAATACACGACAAATATAGACAGGAATTACATGAT
GGG
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Coding sequence (CDS) from alignment at scaffold_34:128401..129153+

>mRNA_9492 ID=mRNA_9492|Name=jgi.p|Nanoce1779_2|606167|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_34:128401..129153+ (Nannochloropsis oceanica)
ATGAAGAAGCAGGCCTCATTTTCAGGGAGGGGCGCCCGGCTGGACGGAAA
GGCCCATGCAGGAGGAGAGGGGGAGGGAGGGAAGGGTTTGGACGGGGGGG
ACTCTATGGACGTGTCAGGAGAGGGTGGAGGAGGAGGAGGCGGGGAGGAA
GGGCCAACTTCACCGCCGGTGTTTTTGGGGAGAACCATTAGTGGACGAGC
CTCTTTGTCGATGACTGAAGGGAGAGGTTCCTCCCTCATCAGCCAGACAG
GAGGGGGGAGCATAAGCTCAAGTTTGCGCGCGTCGTCTTCTGTTTCCTAC
GGTTCGTCTTCGTCCTCGTCCTTGTCCTCCTCGACGGCAGCAGCAGGAGC
AGCAGCAGGAGCAGGAGGATACAAAAAGCCGGGGGCACTTGACAATAAAT
ACAGTAGTAAAAAGGGGTTTCGATCCTTTGCGGGCCCGGGGAATAAGCTG
GCGTAG
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Synonyms
Publications