jgi.p|Nanoce1779_2|533261, mRNA_9491 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533261
Unique Name	mRNA_9491
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	684
Alignment location	scaffold_34:127550..128497 +

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Properties


Property Name	Value
TranscriptId	533347
Track	FilteredModels2
ProteinId	533261

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:127550..128497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533261	gene_9491	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533261	mRNA_9491-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9491	CDS_9491	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:127550..128497+
coding sequence from alignment at scaffold_34:127550..128497+

mRNA sequence

>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Nanoce1779_2|533261|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGGGAGGATTGGGTGGCGGCTCTCGTCTTCCTCAAACCTTCGACGAAGA
ATACAACTGCTACTCCTTTGCCTTCCAAGACAAAACACATTTGGAGGGCA
GCGATAAAATCTTTCTCCCTCCCTCGGCCTTGGACACGTTGGCCCGCCTG
CACATTGATTACCCGATGCTTTTTCAACTCACATGCCGGGTGTCGGGGAA
GAAGACGCATTGCGGCGTACTCGAATTCTCCGCCGCGGAGGGTAGCTGTT
ACTTGCCCTATTGGATGATGCAGAACCTGATGCTGGAGGAGGGTGGCTTC
TTGCAGGTTAAGAATGTCTCTCTCCCGAAATGCACCTTCGTCAAGCTCCG
CCCACAGTCGGTGGACTTCCTCGAGATCACCAATCCCCGTGCCGTCCTCG
AGCGAGCCCTACGGTCCTTCAGTTGTGTAACGGTCGGTGACCAGATCTGC
ATTCCCCACAACGAGAAATTCTACCATATCGAGATCCGTGATGTGAAGCC
AGCGGACGCCGCCTGTATCATTGAGACAGACTGTGACGTGGATTTTGAAG
CCCCTGTGGGCTATGTGGAACCAGGACGAAATGGAGGGGGGCGGGAAGGG
GGAGTGGCGGCGAGCACAACCAGCGGGGGGGGTGATCACATCGAGACCGT
TGAGTGGGAAGGGAGGATACAAGGAGGAGCATGA

protein sequence of jgi.p|Nanoce1779_2|533261

>mRNA_9491-protein ID=mRNA_9491-protein|Name=jgi.p|Nanoce1779_2|533261|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MGGLGGGSRLPQTFDEEYNCYSFAFQDKTHLEGSDKIFLPPSALDTLARL
HIDYPMLFQLTCRVSGKKTHCGVLEFSAAEGSCYLPYWMMQNLMLEEGGF
LQVKNVSLPKCTFVKLRPQSVDFLEITNPRAVLERALRSFSCVTVGDQIC
IPHNEKFYHIEIRDVKPADAACIIETDCDVDFEAPVGYVEPGRNGGGREG
GVAASTTSGGGDHIETVEWEGRIQGGA*

mRNA from alignment at scaffold_34:127550..128497+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Nanoce1779_2|533261|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at scaffold_34:127550..128497+ (Nannochloropsis oceanica)
ATGGGAGGATTGGGTGGCGGCTCTCGTCTTCCTCAAACCTTCGACGAAGA
ATACAACTGCTACTCCTTTGCCTTCCAAGACAAAACACATTTGGAGGGCA
GCGATAAAATCTTTCTCCCTCCCTCGGCCTTGGACACGTTGGCCCGCCTG
CACATTGATTACCCGATGCTTTTTCAACTCACATGCCGGGTGTCGGGGAA
GAAGACGCATTGCGGCGTACTCGAATTCTCCGCCGCGGAGGGTAGCTGTT
ACTTGCCCTATTGGATGATGCAGAACCTGATGCTGGAGGAGGGTGGCTTC
TTGCAGGTAAGCGAGGGAAGGAGCGGGGACGGTTTGCCTCGTCCGCCCAC
TCGCTCGCTCTGCCATCTCTCTGACACCTCTCGTCTTTCCCTCCTCCCTT
CCTCCCCTCCATCGCTCCTCCCCTCCACCCCTCTTTCCTTCTTTTCCTCC
TCCACGTAGGTTAAGAATGTCTCTCTCCCGAAATGCACCTTCGTCAAGCT
CCGCCCACAGTCGGTGGACTTCCTCGAGATCACCAATCCCCGTGCCGTCC
TCGAGCGAGCCCTACGGTCCTTCAGTTGTGTAACGGTCGGTGACCAGATC
TGCATTCCCCACAACGAGAAATTCTACCATATCGAGGTACGCACATCATT
GCCTTTGCCTCCCTCCCTCCCTCTCTTGTTACCTGATTTCTCGTCCCACG
CACCCACCCCTCCTCCCCGTCCTCCTTCCCTGCCTCTTTCCGTTTAGATC
CGTGATGTGAAGCCAGCGGACGCCGCCTGTATCATTGAGACAGACTGTGA
CGTGGATTTTGAAGCCCCTGTGGGCTATGTGGAACCAGGACGAAATGGAG
GGGGGCGGGAAGGGGGAGTGGCGGCGAGCACAACCAGCGGGGGGGGTGAT
CACATCGAGACCGTTGAGTGGGAAGGGAGGATACAAGGAGGAGCATGA

Coding sequence (CDS) from alignment at scaffold_34:127550..128497+

>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Nanoce1779_2|533261|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_34:127550..128497+ (Nannochloropsis oceanica)
ATGGGAGGATTGGGTGGCGGCTCTCGTCTTCCTCAAACCTTCGACGAAGA
ATACAACTGCTACTCCTTTGCCTTCCAAGACAAAACACATTTGGAGGGCA
GCGATAAAATCTTTCTCCCTCCCTCGGCCTTGGACACGTTGGCCCGCCTG
CACATTGATTACCCGATGCTTTTTCAACTCACATGCCGGGTGTCGGGGAA
GAAGACGCATTGCGGCGTACTCGAATTCTCCGCCGCGGAGGGTAGCTGTT
ACTTGCCCTATTGGATGATGCAGAACCTGATGCTGGAGGAGGGTGGCTTC
TTGCAGGTTAAGAATGTCTCTCTCCCGAAATGCACCTTCGTCAAGCTCCG
CCCACAGTCGGTGGACTTCCTCGAGATCACCAATCCCCGTGCCGTCCTCG
AGCGAGCCCTACGGTCCTTCAGTTGTGTAACGGTCGGTGACCAGATCTGC
ATTCCCCACAACGAGAAATTCTACCATATCGAGATCCGTGATGTGAAGCC
AGCGGACGCCGCCTGTATCATTGAGACAGACTGTGACGTGGATTTTGAAG
CCCCTGTGGGCTATGTGGAACCAGGACGAAATGGAGGGGGGCGGGAAGGG
GGAGTGGCGGCGAGCACAACCAGCGGGGGGGGTGATCACATCGAGACCGT
TGAGTGGGAAGGGAGGATACAAGGAGGAGCATGAATGGGAGGATTGGGTG
GCGGCTCTCGTCTTCCTCAAACCTTCGACGAAGAATACAACTGCTACTCC
TTTGCCTTCCAAGACAAAACACATTTGGAGGGCAGCGATAAAATCTTTCT
CCCTCCCTCGGCCTTGGACACGTTGGCCCGCCTGCACATTGATTACCCGA
TGCTTTTTCAACTCACATGCCGGGTGTCGGGGAAGAAGACGCATTGCGGC
GTACTCGAATTCTCCGCCGCGGAGGGTAGCTGTTACTTGCCCTATTGGAT
GATGCAGAACCTGATGCTGGAGGAGGGTGGCTTCTTGCAGGTTAAGAATG
TCTCTCTCCCGAAATGCACCTTCGTCAAGCTCCGCCCACAGTCGGTGGAC
TTCCTCGAGATCACCAATCCCCGTGCCGTCCTCGAGCGAGCCCTACGGTC
CTTCAGTTGTGTAACGGTCGGTGACCAGATCTGCATTCCCCACAACGAGA
AATTCTACCATATCGAGATCCGTGATGTGAAGCCAGCGGACGCCGCCTGT
ATCATTGAGACAGACTGTGACGTGGATTTTGAAGCCCCTGTGGGCTATGT
GGAACCAGGACGAAATGGAGGGGGGCGGGAAGGGGGAGTGGCGGCGAGCA
CAACCAGCGGGGGGGGTGATCACATCGAGACCGTTGAGTGGGAAGGGAGG
ATACAAGGAGGAGCATGAATGGGAGGATTGGGTGGCGGCTCTCGTCTTCC
TCAAACCTTCGACGAAGAATACAACTGCTACTCCTTTGCCTTCCAAGACA
AAACACATTTGGAGGGCAGCGATAAAATCTTTCTCCCTCCCTCGGCCTTG
GACACGTTGGCCCGCCTGCACATTGATTACCCGATGCTTTTTCAACTCAC
ATGCCGGGTGTCGGGGAAGAAGACGCATTGCGGCGTACTCGAATTCTCCG
CCGCGGAGGGTAGCTGTTACTTGCCCTATTGGATGATGCAGAACCTGATG
CTGGAGGAGGGTGGCTTCTTGCAGGTTAAGAATGTCTCTCTCCCGAAATG
CACCTTCGTCAAGCTCCGCCCACAGTCGGTGGACTTCCTCGAGATCACCA
ATCCCCGTGCCGTCCTCGAGCGAGCCCTACGGTCCTTCAGTTGTGTAACG
GTCGGTGACCAGATCTGCATTCCCCACAACGAGAAATTCTACCATATCGA
GATCCGTGATGTGAAGCCAGCGGACGCCGCCTGTATCATTGAGACAGACT
GTGACGTGGATTTTGAAGCCCCTGTGGGCTATGTGGAACCAGGACGAAAT
GGAGGGGGGCGGGAAGGGGGAGTGGCGGCGAGCACAACCAGCGGGGGGGG
TGATCACATCGAGACCGTTGAGTGGGAAGGGAGGATACAAGGAGGAGCAT
GA

Synonyms

Publications