jgi.p|Nanoce1779_2|574779, mRNA_949 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574779
Unique NamemRNA_949
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1932
Alignment locationscaffold_2:828603..830534 -

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Properties
Property NameValue
TranscriptId574865
TrackFilteredModels2
ProteinId574779
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:828603..830534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574779gene_949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574779mRNA_949-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_949CDS_949Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_949 ID=mRNA_949|Name=jgi.p|Nanoce1779_2|574779|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
AGCCACACTACCCACTAGGGGGACGCTCTACTATCTTAACGGCACGGCCA
TCACTGCGGGATCACTGCCAATTGCGCTAGATTTGGCTTTGGCCAATGGC
AGCACAAGTAGCGCTTTTGTTACGCATATTAGATACAGACCGGGCTGGAA
GGAGATTTCGTGGCCTGCCGTGTACACAACTTTTAGTTTCTACGCTCTTG
ATGGTATAACAGGCCTGGCTAGTGATACAGCTACGGTTTTCATCCAGGTC
AAGGCTGTGCACGAGATTCCGAGGGCGGGCATCTTGGATGATAAGGGCAA
CGTCACATTTTTATCGGTTAAGACTATGGCAGGGCGGCTCACAGCTGTGA
CACTCATGGGCACAGCATCTGAGGGCTTTCGCATTATGACAGCTCAAATC
GCTTCTCTCCCTACGCACGGCCATCTATACCGCCTCGACGACACCAACGC
TACCACACCACTGCTGGTGGGGGATGAGCTTGCGATCACTCCTCTCGCAC
CGGCACAGTTGGCTTATCTCTACACGGGGCCGCAAGTACAATTGCTGCAA
GGACAGGATAATGATTACAAAAAGGCACATGCCGCCCGCATCAATGACAA
CTTGGCCACTGACGCCTTCACATATATTGTCATTGATAGCTTCAATGCCT
CTTCCGTACCAGGCACTCTTCATCTTGTTGTTGTGCCCTCCTTGGTGGCT
CTGCCCACGATCAATACGCCCATCGTACCCGAGAACACCCTGACGCCCGT
GTATCTGTATGGTATGGATCACCAAAGCCTGGAGCACCGGGAATTGTGCT
TCGAAATTACGGGCCTGCCACATCATGGCACCTTGCACATACTACGGGCG
AATGGCACTTCGGATGCTGTGACCTCGGTGCCTTTTCGGTTGCCGGACCA
GGTATCATCATTTCCCTACGAGACAGGCGTGACTGTGCATTATGTTTCGG
ATGCTGGGTTCTTTACACAGCCCAATCGGACCTGGAACGGCACGGCTCTA
TTCCCGGAAGGTGAGGTGGAAGAAGGGTTTTATTTTCGGGTTGTAGCATG
TGAGAGCGGCATGATCAATGCATCGAATATACTGCCATCCACACGATCTA
TGTGGCAGCAATTGGCAGTACAGAACGAGAACGCCGCGACGACAATCGAC
CTTGGTACAAGCAACTACTCTGTCTACGCCACAACCAACCTTGACAACGT
CACGCCACTCGGAACCAATCCCACGCAGGTGGTTCTAGAAGCAGTCTCCA
TCTCAGATCCTGACCTGGGCATCGATCCGGTTCTCGTAAATATTGCGTGC
ACATACGGGAGCATCCGTTTGAACGAAAATAATATCGCGCTCGCCGATTT
TACATCCTCGCGTTACTGTCCGACCAACTGCCTTAAAAAGACGTCGAAGC
TTCTTCGATTTGTGACGACGCCTCAAGATTTGGATTTCCTGCTCAACGGT
CTTGCCTATTCGACCACTGTACCAAACATCGTTGACCAGATTGAGATCAG
CGTCTATGACGGAGTAGGCCCTCCTTGCCTTGCTGCAGATGTCCTTCCAG
CTGGGTCTGGCCGCACCAGAGGTTGTATGACAGAGGAAGTGCGGGTGAGC
GTGACTGTTCAAGACTTCATGATAGTCTCCACATTTGACGAAAAACGAAA
GCGAGCCAACGAGAACGATCAATCCTACTTATCCTACATGATAGCAGCCC
TCCTTCTGATCATCCTCACCACTATCTCGATGTGCGCTTGCTGCTGCTGC
TGCCCAAAATTCTTGCTCCGTTACAGTCGTTGTTGTCTGGTAGCACCTCG
TCCACACAACAGCGCCGAAGCCTAAATGTTTCCCAACATGGACAATGTTC
TTCTTATTTCTGGAAAAAGCATACCAGCACGCACACAAAGCATGAGGCAA
AACAAACAAAGCGAAAACAAAACGCGCACCGT
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protein sequence of jgi.p|Nanoce1779_2|574779

>mRNA_949-protein ID=mRNA_949-protein|Name=jgi.p|Nanoce1779_2|574779|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MAGRLTAVTLMGTASEGFRIMTAQIASLPTHGHLYRLDDTNATTPLLVGD
ELAITPLAPAQLAYLYTGPQVQLLQGQDNDYKKAHAARINDNLATDAFTY
IVIDSFNASSVPGTLHLVVVPSLVALPTINTPIVPENTLTPVYLYGMDHQ
SLEHRELCFEITGLPHHGTLHILRANGTSDAVTSVPFRLPDQVSSFPYET
GVTVHYVSDAGFFTQPNRTWNGTALFPEGEVEEGFYFRVVACESGMINAS
NILPSTRSMWQQLAVQNENAATTIDLGTSNYSVYATTNLDNVTPLGTNPT
QVVLEAVSISDPDLGIDPVLVNIACTYGSIRLNENNIALADFTSSRYCPT
NCLKKTSKLLRFVTTPQDLDFLLNGLAYSTTVPNIVDQIEISVYDGVGPP
CLAADVLPAGSGRTRGCMTEEVRVSVTVQDFMIVSTFDEKRKRANENDQS
YLSYMIAALLLIILTTISMCACCCCCPKFLLRYSRCCLVAPRPHNSAEA*
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mRNA from alignment at scaffold_2:828603..830534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_949 ID=mRNA_949|Name=jgi.p|Nanoce1779_2|574779|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp|location=Sequence derived from alignment at scaffold_2:828603..830534- (Nannochloropsis oceanica)
AGCCACACTACCCACTAGGGGGACGCTCTACTATCTTAACGGCACGGCCA
TCACTGCGGGATCACTGCCAATTGCGCTAGATTTGGCTTTGGCCAATGGC
AGCACAAGTAGCGCTTTTGTTACGCATATTAGATACAGACCGGGCTGGAA
GGAGATTTCGTGGCCTGCCGTGTACACAACTTTTAGTTTCTACGCTCTTG
ATGGTATAACAGGCCTGGCTAGTGATACAGCTACGGTTTTCATCCAGGTC
AAGGCTGTGCACGAGATTCCGAGGGCGGGCATCTTGGATGATAAGGGCAA
CGTCACATTTTTATCGGTTAAGACTATGGCAGGGCGGCTCACAGCTGTGA
CACTCATGGGCACAGCATCTGAGGGCTTTCGCATTATGACAGCTCAAATC
GCTTCTCTCCCTACGCACGGCCATCTATACCGCCTCGACGACACCAACGC
TACCACACCACTGCTGGTGGGGGATGAGCTTGCGATCACTCCTCTCGCAC
CGGCACAGTTGGCTTATCTCTACACGGGGCCGCAAGTACAATTGCTGCAA
GGACAGGATAATGATTACAAAAAGGCACATGCCGCCCGCATCAATGACAA
CTTGGCCACTGACGCCTTCACATATATTGTCATTGATAGCTTCAATGCCT
CTTCCGTACCAGGCACTCTTCATCTTGTTGTTGTGCCCTCCTTGGTGGCT
CTGCCCACGATCAATACGCCCATCGTACCCGAGAACACCCTGACGCCCGT
GTATCTGTATGGTATGGATCACCAAAGCCTGGAGCACCGGGAATTGTGCT
TCGAAATTACGGGCCTGCCACATCATGGCACCTTGCACATACTACGGGCG
AATGGCACTTCGGATGCTGTGACCTCGGTGCCTTTTCGGTTGCCGGACCA
GGTATCATCATTTCCCTACGAGACAGGCGTGACTGTGCATTATGTTTCGG
ATGCTGGGTTCTTTACACAGCCCAATCGGACCTGGAACGGCACGGCTCTA
TTCCCGGAAGGTGAGGTGGAAGAAGGGTTTTATTTTCGGGTTGTAGCATG
TGAGAGCGGCATGATCAATGCATCGAATATACTGCCATCCACACGATCTA
TGTGGCAGCAATTGGCAGTACAGAACGAGAACGCCGCGACGACAATCGAC
CTTGGTACAAGCAACTACTCTGTCTACGCCACAACCAACCTTGACAACGT
CACGCCACTCGGAACCAATCCCACGCAGGTGGTTCTAGAAGCAGTCTCCA
TCTCAGATCCTGACCTGGGCATCGATCCGGTTCTCGTAAATATTGCGTGC
ACATACGGGAGCATCCGTTTGAACGAAAATAATATCGCGCTCGCCGATTT
TACATCCTCGCGTTACTGTCCGACCAACTGCCTTAAAAAGACGTCGAAGC
TTCTTCGATTTGTGACGACGCCTCAAGATTTGGATTTCCTGCTCAACGGT
CTTGCCTATTCGACCACTGTACCAAACATCGTTGACCAGATTGAGATCAG
CGTCTATGACGGAGTAGGCCCTCCTTGCCTTGCTGCAGATGTCCTTCCAG
CTGGGTCTGGCCGCACCAGAGGTTGTATGACAGAGGAAGTGCGGGTGAGC
GTGACTGTTCAAGACTTCATGATAGTCTCCACATTTGACGAAAAACGAAA
GCGAGCCAACGAGAACGATCAATCCTACTTATCCTACATGATAGCAGCCC
TCCTTCTGATCATCCTCACCACTATCTCGATGTGCGCTTGCTGCTGCTGC
TGCCCAAAATTCTTGCTCCGTTACAGTCGTTGTTGTCTGGTAGCACCTCG
TCCACACAACAGCGCCGAAGCCTAAATGTTTCCCAACATGGACAATGTTC
TTCTTATTTCTGGAAAAAGCATACCAGCACGCACACAAAGCATGAGGCAA
AACAAACAAAGCGAAAACAAAACGCGCACCGT
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Coding sequence (CDS) from alignment at scaffold_2:828603..830534-

>mRNA_949 ID=mRNA_949|Name=jgi.p|Nanoce1779_2|574779|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_2:828603..830534- (Nannochloropsis oceanica)
ATGGCAGGGCGGCTCACAGCTGTGACACTCATGGGCACAGCATCTGAGGG
CTTTCGCATTATGACAGCTCAAATCGCTTCTCTCCCTACGCACGGCCATC
TATACCGCCTCGACGACACCAACGCTACCACACCACTGCTGGTGGGGGAT
GAGCTTGCGATCACTCCTCTCGCACCGGCACAGTTGGCTTATCTCTACAC
GGGGCCGCAAGTACAATTGCTGCAAGGACAGGATAATGATTACAAAAAGG
CACATGCCGCCCGCATCAATGACAACTTGGCCACTGACGCCTTCACATAT
ATTGTCATTGATAGCTTCAATGCCTCTTCCGTACCAGGCACTCTTCATCT
TGTTGTTGTGCCCTCCTTGGTGGCTCTGCCCACGATCAATACGCCCATCG
TACCCGAGAACACCCTGACGCCCGTGTATCTGTATGGTATGGATCACCAA
AGCCTGGAGCACCGGGAATTGTGCTTCGAAATTACGGGCCTGCCACATCA
TGGCACCTTGCACATACTACGGGCGAATGGCACTTCGGATGCTGTGACCT
CGGTGCCTTTTCGGTTGCCGGACCAGGTATCATCATTTCCCTACGAGACA
GGCGTGACTGTGCATTATGTTTCGGATGCTGGGTTCTTTACACAGCCCAA
TCGGACCTGGAACGGCACGGCTCTATTCCCGGAAGGTGAGGTGGAAGAAG
GGTTTTATTTTCGGGTTGTAGCATGTGAGAGCGGCATGATCAATGCATCG
AATATACTGCCATCCACACGATCTATGTGGCAGCAATTGGCAGTACAGAA
CGAGAACGCCGCGACGACAATCGACCTTGGTACAAGCAACTACTCTGTCT
ACGCCACAACCAACCTTGACAACGTCACGCCACTCGGAACCAATCCCACG
CAGGTGGTTCTAGAAGCAGTCTCCATCTCAGATCCTGACCTGGGCATCGA
TCCGGTTCTCGTAAATATTGCGTGCACATACGGGAGCATCCGTTTGAACG
AAAATAATATCGCGCTCGCCGATTTTACATCCTCGCGTTACTGTCCGACC
AACTGCCTTAAAAAGACGTCGAAGCTTCTTCGATTTGTGACGACGCCTCA
AGATTTGGATTTCCTGCTCAACGGTCTTGCCTATTCGACCACTGTACCAA
ACATCGTTGACCAGATTGAGATCAGCGTCTATGACGGAGTAGGCCCTCCT
TGCCTTGCTGCAGATGTCCTTCCAGCTGGGTCTGGCCGCACCAGAGGTTG
TATGACAGAGGAAGTGCGGGTGAGCGTGACTGTTCAAGACTTCATGATAG
TCTCCACATTTGACGAAAAACGAAAGCGAGCCAACGAGAACGATCAATCC
TACTTATCCTACATGATAGCAGCCCTCCTTCTGATCATCCTCACCACTAT
CTCGATGTGCGCTTGCTGCTGCTGCTGCCCAAAATTCTTGCTCCGTTACA
GTCGTTGTTGTCTGGTAGCACCTCGTCCACACAACAGCGCCGAAGCCTAA
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Synonyms
Publications