jgi.p|Nanoce1779_2|268004, mRNA_9489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|268004
Unique NamemRNA_9489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1337
Alignment locationscaffold_34:121100..122639 +

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Properties
Property NameValue
TranscriptId268090
TrackFilteredModels2
ProteinId268004
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:121100..122639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|268004gene_9489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|268004mRNA_9489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9489CDS_9489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Nanoce1779_2|268004|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp
TCCTATTCTTATATTGATTAATGTTTTCATGTCTATTATGATTATTATTA
TTCTTTTACTCTTGGGGAGGCTTTTCCTCTCCTCTCTCTCGCCCTACTCG
AAATGATGGCAATACCTCCATCTCTACCTTATCTACCGCCCCAACCTCCC
TCTCTCCCTTCCTTTCGTCGCAGCGTCACCACTGCCAGATGACCTTCGGA
GAGATTTCCCGTCTCCAGCACTGTTGTCTTGCCTTGCGTCTCTACCCTTC
CTCCCCCACTTCCTCCCCCCCGGCCCGCCCTTCTTCTTGCCCTCCCGATG
CCGCACACGAAGCATGAGATGGTCCGTAAAGGACGGAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAGAAGGAGGACGAGGAGGGCATATCCGCCCAGGAA
TAGACCAGGCAACAATTTCACGCACTTGTCATGCACATTCAAAGCTGTCG
GGGTCAACGCAATGCCTTCCTCCTCCCTCCCTCTTCCGCCCCCCCCTTCC
CTCTTCTCCACCTCCCTCGTTTCGTCCCCTCTTTTCCTCCCTCCCCCTCG
ACCCTCCCCCTCGCGGGCAAAGCCACAACCCGGCAGACGACGTTCTCAAG
CAAGCCCACCATACTGACTACATCACCTTCCATCGCCGCCTGCCCTACCC
ATGTGTCCGGATCGACTGGAGGGAGCCGTCCTGGGATTTCATCCCCCTCA
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTTCGTCATCGTCTTTTTC
TGGTGGTGGTGGTGGTGTAAGGCGTCGCTCGCTATAAGTAGCCGCAGTAG
CAGCAGTAGAAGCAGTAGTAGAAGCAGCACATGGTCCCAAGAGCATCAAC
AGGTCAAACATGCCCTCGGTGGTGTCACTATCCCTGCATGCCTCGGCTTC
ACTCGGTGGTCGTGGCCCGATTGTGTGACCTTCCTCCTCAATTCTGGTCC
TCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCTTGCTC
TTGCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGTTGCGGCACCGATCGA
GGCACTTGTCACCACTTTCCACGCTGTCAATTCCATGGCTGTGGCGAGAG
TAGGGGCGGCCGCGACGAGGATGCGAAGGGTAGACGGCAGTGGGGGAACA
GTGCTGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGGTGGCGGCATGGA
TTTACCTGCGTTAGGGTTGGGGGTGTGTGTATGGTTTTTTAGCGAAAGCT
GTATGGCAACCTTGTCCGCGTTCGTCTCTACAAATGGATCTACGAAAGTG
GAATGAAAGCAGAGCGGCCGACACAGGGGAGGGGCGG
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protein sequence of jgi.p|Nanoce1779_2|268004

>mRNA_9489-protein ID=mRNA_9489-protein|Name=jgi.p|Nanoce1779_2|268004|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MPHTKHEMVRKGRRRRRRRRRRREGGRGGHIRPGIDQATISRTCHAHSKL
SGSTQCLPPPSLFRPPLPSSPPPSFRPLFSSLPLDPPPRGQSHNPADDVL
KQAHHTDYITFHRRLPYPCVRIDWREPSWDFIPLILLLLLLLLLPFVIVF
FWWWWWCKASLAISSRSSSSRSSSRSSTWSQEHQQVKHALGGVTIPACLG
FTRWSWPDCVTFLLNSGPPPPAAAAAAAAAVALALAGAGAGAGGGGCGTD
RGTCHHFPRCQFHGCGESRGGRDEDAKGRRQWGNSAEGGGGGGGEGGWRH
GFTCVRVGGVCMVF*
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mRNA from alignment at scaffold_34:121100..122639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Nanoce1779_2|268004|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at scaffold_34:121100..122639+ (Nannochloropsis oceanica)
TCCTATTCTTATATTGATTAATGTTTTCATGTCTATTATGATTATTATTA
TTCTTTTACTCTTGGGGAGGCTTTTCCTCTCCTCTCTCTCGCCCTACTCG
AAATGATGGCAATACCTCCATCTCTACCTTATCTACCGCCCCAACCTCCC
TCTCTCCCTTCCTTTCGTCGCAGCGTCACCACTGCCAGATGACCTTCGGA
GAGATTTCCCGTCTCCAGCACTGTTGTCTTGCCTTGCGTCTCTACCCTTC
CTCCCCCACTTCCTCCCCCCCGGCCCGCCCTTCTTCTTGCCCTCCCGATG
CCGCACACGAAGCATGAGATGGTCCGTAAAGGACGGAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAGAAGGAGGACGAGGAGGAGGAGGAGGAGGGAGGA
GGAGAAGAAGACGCCGTCGCACTCGCAGACAACGGAGGAAGACATTCCAT
CATCACCATCCCCCAACCCCCTTCTATCCCCCCCTCCCCCCCCTCCTCCG
CTAAGCATCCTGCTACTTCCAACGTCCGCCCCACCACTCCCCCTTCCTCA
CTCCTTTCCTCCTCCTCCTCCTCCTCCTTTGCAAAGGCATATCCGCCCAG
GAATAGACCAGGCAACAATTTCACGCACTTGTCATGCACATTCAAAGCTG
TCGGGGTCAACGCAATGCCTTCCTCCTCCCTCCCTCTTCCGCCCCCCCCT
TCCCTCTTCTCCACCTCCCTCGTTTCGTCCCCTCTTTTCCTCCCTCCCCC
TCGACCCTCCCCCTCGCGGGCAAAGCCACAACCCGGCAGACGACGTTCTC
AAGCAAGCCCACCATACTGACTACATCACCTTCCATCGCCGCCTGCCCTA
CCCATGTGTCCGGATCGACTGGAGGGAGCCGTCCTGGGATTTCATCCCCC
TCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTTCGTCATCGTCTTT
TTCTGGTGGTGGTGGTGGTGTAAGGCGTCGCTCGCTATAAGTAGCCGCAG
TAGCAGCAGTAGAAGCAGTAGTAGAAGCAGCACATGGTCCCAAGAGCATC
AACAGGTCAAACATGCCCTCGGTGGTGTCACTATCCCTGCATGCCTCGGC
TTCACTCGGTGGTCGTGGCCCGATTGTGTGACCTTCCTCCTCAATTCTGG
TCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCTTG
CTCTTGCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGTTGCGGCACCGAT
CGAGGCACTTGTCACCACTTTCCACGCTGTCAATTCCATGGCTGTGGCGA
GAGTAGGGGCGGCCGCGACGAGGATGCGAAGGGTAGACGGCAGTGGGGGA
ACAGTGCTGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGGTGGCGGCAT
GGATTTACCTGCGTTAGGGTTGGGGGTGTGTGTATGGTTTTTTAGCGAAA
GCTGTATGGCAACCTTGTCCGCGTTCGTCTCTACAAATGGATCTACGAAA
GTGGAATGAAAGCAGAGCGGCCGACACAGGGGAGGGGCGG
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Coding sequence (CDS) from alignment at scaffold_34:121100..122639+

>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Nanoce1779_2|268004|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_34:121100..122639+ (Nannochloropsis oceanica)
ATGCCGCACACGAAGCATGAGATGGTCCGTAAAGGACGGAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAGAAGGAGGACGAGGAGGGCATATCCGCCCAG
GAATAGACCAGGCAACAATTTCACGCACTTGTCATGCACATTCAAAGCTG
TCGGGGTCAACGCAATGCCTTCCTCCTCCCTCCCTCTTCCGCCCCCCCCT
TCCCTCTTCTCCACCTCCCTCGTTTCGTCCCCTCTTTTCCTCCCTCCCCC
TCGACCCTCCCCCTCGCGGGCAAAGCCACAACCCGGCAGACGACGTTCTC
AAGCAAGCCCACCATACTGACTACATCACCTTCCATCGCCGCCTGCCCTA
CCCATGTGTCCGGATCGACTGGAGGGAGCCGTCCTGGGATTTCATCCCCC
TCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTTCGTCATCGTCTTT
TTCTGGTGGTGGTGGTGGTGTAAGGCGTCGCTCGCTATAAGTAGCCGCAG
TAGCAGCAGTAGAAGCAGTAGTAGAAGCAGCACATGGTCCCAAGAGCATC
AACAGGTCAAACATGCCCTCGGTGGTGTCACTATCCCTGCATGCCTCGGC
TTCACTCGGTGGTCGTGGCCCGATTGTGTGACCTTCCTCCTCAATTCTGG
TCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCTTG
CTCTTGCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGTTGCGGCACCGAT
CGAGGCACTTGTCACCACTTTCCACGCTGTCAATTCCATGGCTGTGGCGA
GAGTAGGGGCGGCCGCGACGAGGATGCGAAGGGTAGACGGCAGTGGGGGA
ACAGTGCTGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGGTGGCGGCAT
GGATTTACCTGCGTTAGGGTTGGGGGTGTGTGTATGGTTTTTTAGATGCC
GCACACGAAGCATGAGATGGTCCGTAAAGGACGGAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAGAAGGAGGACGAGGAGGGCATATCCGCCCAGGAATA
GACCAGGCAACAATTTCACGCACTTGTCATGCACATTCAAAGCTGTCGGG
GTCAACGCAATGCCTTCCTCCTCCCTCCCTCTTCCGCCCCCCCCTTCCCT
CTTCTCCACCTCCCTCGTTTCGTCCCCTCTTTTCCTCCCTCCCCCTCGAC
CCTCCCCCTCGCGGGCAAAGCCACAACCCGGCAGACGACGTTCTCAAGCA
AGCCCACCATACTGACTACATCACCTTCCATCGCCGCCTGCCCTACCCAT
GTGTCCGGATCGACTGGAGGGAGCCGTCCTGGGATTTCATCCCCCTCATC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTTCGTCATCGTCTTTTTCTG
GTGGTGGTGGTGGTGTAAGGCGTCGCTCGCTATAAGTAGCCGCAGTAGCA
GCAGTAGAAGCAGTAGTAGAAGCAGCACATGGTCCCAAGAGCATCAACAG
GTCAAACATGCCCTCGGTGGTGTCACTATCCCTGCATGCCTCGGCTTCAC
TCGGTGGTCGTGGCCCGATTGTGTGACCTTCCTCCTCAATTCTGGTCCTC
CTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCTTGCTCTT
GCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGTTGCGGCACCGATCGAGG
CACTTGTCACCACTTTCCACGCTGTCAATTCCATGGCTGTGGCGAGAGTA
GGGGCGGCCGCGACGAGGATGCGAAGGGTAGACGGCAGTGGGGGAACAGT
GCTGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGGTGGCGGCATGGATT
TACCTGCGTTAGGGTTGGGGGTGTGTGTATGGTTTTTTAG
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Synonyms
Publications