jgi.p|Nanoce1779_2|606131, mRNA_9486 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606131
Unique NamemRNA_9486
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1431
Alignment locationscaffold_34:105001..106431 -

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Properties
Property NameValue
TranscriptId606217
TrackFilteredModels2
ProteinId606131
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:105001..106431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606131gene_9486Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606131mRNA_9486-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9486CDS_9486Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9486 ID=mRNA_9486|Name=jgi.p|Nanoce1779_2|606131|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
GCTGTTGCTCCTGCTGTTGCTGTTGTTGCTGCTGCTGATACTGTTGCCAC
CAGTGATGAAGATAGAGCTGCTGCATTTCGTGCTTTCATTTCGATGCGAG
CTCGCTTCACCCTTTCTTTCTTCTTCTTTTTCTTCTTCTTCTTCTCCTAC
TTCTCCTCCTCCTCTTTTTCCTCCCGCTGCTCCTTTGATCTCCCTCTTCT
TCACGGGTGTCCTCGCAATTTTGTCATTCCTCCTCCCTATGTCTTCCCCT
TCTGTTCGTTCCTTTCTTTCTCCTCTTCCCGCCTCTTTTGCCCCTCCTGC
TGCTCCTGCTCCTCCTCTTACTCCTCGTCCTTCTGCTCCTCCTCCTGCTC
CTCGTCCTCCTGCTCCTCCTGCTCCTGCTCCTCCTCCTCCTCTTCTTCCT
ACGTTCCCTCCATTTCCTGCCCTGTACGACTCTCTTACCAATTCTTCCGC
CTTCCTCTCATCCCCAAGCATCAATATCATGGTCGTCTCCCCCACCGCTA
TGTGTAAACATGTTCTCGCATTATCATCGTAACCCGCCGCCTCCCTGCGC
CTCCCACCCTCTTTCCATCCCTCTCTCTTCGCAGCTTCTCTAAGTTCTCT
CCCTAGTGCCGAGGTTCCAGCGGGGAGGGTAAGCGTACTTTCACTGCTGA
TGCTCTTGCTGCTTTCCCTATCGTTGTTGTCGCTACTCTTGCTACTGTTA
CTGTTACCACTGTCGCTGATGCTGGTGCCGATCCCTTCTCTTCCCTGCTC
GTGGTGGTGGTGCTGCTGCTGCTGGAGAAAGAGGGGCGAGGAGGGGGGAG
AGGAAGAGGGAGAAGAGGAGAGGGAGGAATGGATGGAGGCAGCCATCTTG
CTTTGTGTTTCGGGGGGCGGAGAAAGAGTAAGAGCCAAGCCCGAAGCATG
TGTGGCCTTCAGGTCGATCACTGCCACTACCTCCCCTCCTTCCTTCTCAT
CCTCGTCCTCCATCCCGTCCTCGTCCTTCCCTTCTCTCCTATCGACAGCG
GCTTGCCTGAGAACCAACAAACCGTCTTCCTGAGAAACTTCCACGCTGTA
AGACTCCGTGCTCCATGTGTCTTGGGCAGTGTAGAGCTTTGCCAAAGCAA
TGCCATTGCTGTTGATGCTGGTGGTTGTCTTGTCGATGCCGATGGTGTTA
CTGCTTGTCATTGTCTTTGTACTTATCGCGGCCAGATCAGACGGGTAAGT
GATGGAAGAAGGGAAGGACGACACAGAGAACGTGCCCGAGCAGGACGAGG
AGCGGGAGGAAGGCGGGGAGCAAAAGGAGGAGGAGGAGCCGGAGGGGTCC
TCGGCAGCGGCCGGTAGCATAATAGGCTCATGTACAGAAGTCGAAGGAGG
ACGAGACGCTACAACATCTATTATCATGGCGGACGAGACAGACTCCATCT
CCATCTTCGCTTGAGGCTGGAGGCGACCTGT
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protein sequence of jgi.p|Nanoce1779_2|606131

>mRNA_9486-protein ID=mRNA_9486-protein|Name=jgi.p|Nanoce1779_2|606131|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MDGGSHLALCFGGRRKSKSQARSMCGLQVDHCHYLPSFLLILVLHPVLVL
PFSPIDSGLPENQQTVFLRNFHAVRLRAPCVLGSVELCQSNAIAVDAGGC
LVDADGVTACHCLCTYRGQIRRVSDGRREGRHRERARAGRGAGGRRGAKG
GGGAGGVLGSGR*
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mRNA from alignment at scaffold_34:105001..106431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9486 ID=mRNA_9486|Name=jgi.p|Nanoce1779_2|606131|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at scaffold_34:105001..106431- (Nannochloropsis oceanica)
GCTGTTGCTCCTGCTGTTGCTGTTGTTGCTGCTGCTGATACTGTTGCCAC CAGTGATGAAGATAGAGCTGCTGCATTTCGTGCTTTCATTTCGATGCGAG CTCGCTTCACCCTTTCTTTCTTCTTCTTTTTCTTCTTCTTCTTCTCCTAC TTCTCCTCCTCCTCTTTTTCCTCCCGCTGCTCCTTTGATCTCCCTCTTCT TCACGGGTGTCCTCGCAATTTTGTCATTCCTCCTCCCTATGTCTTCCCCT TCTGTTCGTTCCTTTCTTTCTCCTCTTCCCGCCTCTTTTGCCCCTCCTGC TGCTCCTGCTCCTCCTCTTACTCCTCGTCCTTCTGCTCCTCCTCCTGCTC CTCGTCCTCCTGCTCCTCCTGCTCCTGCTCCTCCTCCTCCTCTTCTTCCT ACGTTCCCTCCATTTCCTGCCCTGTACGACTCTCTTACCAATTCTTCCGC CTTCCTCTCATCCCCAAGCATCAATATCATGGTCGTCTCCCCCACCGCTA TGTGTAAACATGTTCTCGCATTATCATCGTAACCCGCCGCCTCCCTGCGC CTCCCACCCTCTTTCCATCCCTCTCTCTTCGCAGCTTCTCTAAGTTCTCT CCCTAGTGCCGAGGTTCCAGCGGGGAGGGTAAGCGTACTTTCACTGCTGA TGCTCTTGCTGCTTTCCCTATCGTTGTTGTCGCTACTCTTGCTACTGTTA CTGTTACCACTGTCGCTGATGCTGGTGCCGATCCCTTCTCTTCCCTGCTC GTGGTGGTGGTGCTGCTGCTGCTGGAGAAAGAGGGGCGAGGAGGGGGGAG AGGAAGAGGGAGAAGAGGAGAGGGAGGAATGGATGGAGGCAGCCATCTTG CTTTGTGTTTCGGGGGGCGGAGAAAGAGTAAGAGCCAAGCCCGAAGCATG TGTGGCCTTCAGGTCGATCACTGCCACTACCTCCCCTCCTTCCTTCTCAT CCTCGTCCTCCATCCCGTCCTCGTCCTTCCCTTCTCTCCTATCGACAGCG GCTTGCCTGAGAACCAACAAACCGTCTTCCTGAGAAACTTCCACGCTGTA AGACTCCGTGCTCCATGTGTCTTGGGCAGTGTAGAGCTTTGCCAAAGCAA TGCCATTGCTGTTGATGCTGGTGGTTGTCTTGTCGATGCCGATGGTGTTA CTGCTTGTCATTGTCTTTGTACTTATCGCGGCCAGATCAGACGGGTAAGT GATGGAAGAAGGGAAGGACGACACAGAGAACGTGCCCGAGCAGGACGAGG AGCGGGAGGAAGGCGGGGAGCAAAAGGAGGAGGAGGAGCCGGAGGGGTCC TCGGCAGCGGCCGGTAGCATAATAGGCTCATGTACAGAAGTCGAAGGAGG ACGAGACGCTACAACATCTATTATCATGGCGGACGAGACAGACTCCATCT CCATCTTCGCTTGAGGCTGGAGGCGACCTGT
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Coding sequence (CDS) from alignment at scaffold_34:105001..106431-

>mRNA_9486 ID=mRNA_9486|Name=jgi.p|Nanoce1779_2|606131|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_34:105001..106431- (Nannochloropsis oceanica)
ATGGATGGAGGCAGCCATCTTGCTTTGTGTTTCGGGGGGCGGAGAAAGAG
TAAGAGCCAAGCCCGAAGCATGTGTGGCCTTCAGGTCGATCACTGCCACT
ACCTCCCCTCCTTCCTTCTCATCCTCGTCCTCCATCCCGTCCTCGTCCTT
CCCTTCTCTCCTATCGACAGCGGCTTGCCTGAGAACCAACAAACCGTCTT
CCTGAGAAACTTCCACGCTGTAAGACTCCGTGCTCCATGTGTCTTGGGCA
GTGTAGAGCTTTGCCAAAGCAATGCCATTGCTGTTGATGCTGGTGGTTGT
CTTGTCGATGCCGATGGTGTTACTGCTTGTCATTGTCTTTGTACTTATCG
CGGCCAGATCAGACGGGTAAGTGATGGAAGAAGGGAAGGACGACACAGAG
AACGTGCCCGAGCAGGACGAGGAGCGGGAGGAAGGCGGGGAGCAAAAGGA
GGAGGAGGAGCCGGAGGGGTCCTCGGCAGCGGCCGGTAG
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Synonyms
Publications