jgi.p|Nanoce1779_2|508218, mRNA_9484 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|508218
Unique NamemRNA_9484
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length189
Alignment locationscaffold_34:103017..103564 +

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Properties
Property NameValue
TranscriptId508304
TrackFilteredModels2
ProteinId508218
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:103017..103564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|508218gene_9484Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|508218mRNA_9484-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9484CDS_9484Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9484 ID=mRNA_9484|Name=jgi.p|Nanoce1779_2|508218|organism=Nannochloropsis oceanica|type=mRNA|length=189bp
ATGCGTGTGTGGAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCG
ACACCCAGTCAACGAGGACGACGCCCCGGGCTATCACAAGGTGATCAAAG
AACCCTTGGATCTCTACCTTATCAAGCGAAGGATCGACGACGGCACGATT
GGCTCCGTTTCCGCCCTCGGGCGCGCCTTGGGTGTCATG
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protein sequence of jgi.p|Nanoce1779_2|508218

>mRNA_9484-protein ID=mRNA_9484-protein|Name=jgi.p|Nanoce1779_2|508218|organism=Nannochloropsis oceanica|type=polypeptide|length=63bp
MRVWNKANQHRVAGTFRHPVNEDDAPGYHKVIKEPLDLYLIKRRIDDGTI
GSVSALGRALGVM
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mRNA from alignment at scaffold_34:103017..103564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9484 ID=mRNA_9484|Name=jgi.p|Nanoce1779_2|508218|organism=Nannochloropsis oceanica|type=mRNA|length=548bp|location=Sequence derived from alignment at scaffold_34:103017..103564+ (Nannochloropsis oceanica)
ATGCGTGTGTGGAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCG
ACACCCAGTCAACGAGGACGACGCCCCGGGCTATCACAAGGTAAGTCTTC
CTTCCCTCCCTCCCTCCCTGTCTCCTGCATGTATGCATGAATCTGTGTAT
GTGTGCTTGGAAGCATTCAGACTGATCACCTGTCTCATGCATGTATGTAG
ATCATCTGACTTAGTGGTAGTAATAAATCAGAAGATAAATCACTTGATGA
ATTGAAAGTAAGATTTATATCGACGAGTGGGTAAATGGTAACATAAATGA
TTAAATGAATAAGACAAAAGGTGCAAATGATCCCACCCAACAAACGATCT
AATTAACAACATCCACACACAAATAAATAAATGAAAATAAACAAATGATA
AGATAAGTAATCGAATAAATTCACACACAAATGAATGAAAAATACACAGG
TGATCAAAGAACCCTTGGATCTCTACCTTATCAAGCGAAGGATCGACGAC
GGCACGATTGGCTCCGTTTCCGCCCTCGGGCGCGCCTTGGGTGTCATG
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Coding sequence (CDS) from alignment at scaffold_34:103017..103564+

>mRNA_9484 ID=mRNA_9484|Name=jgi.p|Nanoce1779_2|508218|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_34:103017..103564+ (Nannochloropsis oceanica)
ATGCGTGTGTGGAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCG
ACACCCAGTCAACGAGGACGACGCCCCGGGCTATCACAAGGTGATCAAAG
AACCCTTGGATCTCTACCTTATCAAGCGAAGGATCGACGACGGCACGATT
GGCTCCGTTTCCGCCCTCGGGCGCGCCTTGGGTGTCATGATGCGTGTGTG
GAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCGACACCCAGTCA
ACGAGGACGACGCCCCGGGCTATCACAAGGTGATCAAAGAACCCTTGGAT
CTCTACCTTATCAAGCGAAGGATCGACGACGGCACGATTGGCTCCGTTTC
CGCCCTCGGGCGCGCCTTGGGTGTCATG
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Synonyms
Publications