jgi.p|Nanoce1779_2|267821, mRNA_9483 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|267821
Unique NamemRNA_9483
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1486
Alignment locationscaffold_34:101636..103121 +

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Properties
Property NameValue
TranscriptId267907
TrackFilteredModels2
ProteinId267821
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:101636..103121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|267821gene_9483Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|267821mRNA_9483-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9483CDS_9483Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9483 ID=mRNA_9483|Name=jgi.p|Nanoce1779_2|267821|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
GTCTCAGTCGTCCCCCCTCCCTCTTTCCATCCCCTCCTTCATAGGCAACA
CCATCATCATCGAGATTAAGACACAGGTCAAAGACACCGCCTAGAAATCA
CCCGCCCTCCTGGTCCCAAGGAATCAATGGCTCCTGCCCCGACGGCCAAC
AGCACCGACCACCCCACCACCAGCATCACGGCAAGCACCATGGATGTGAA
GGAGCTTCAGGCAGAGCTCTCCGAGATGGACGACTGTGTCAAATTCATGC
AAGAAGAGATTGATATGCTTAAAAGCGGGGCCTTAGACAGAAGGTTGAAG
GAGGTAGGGGCGTATTCAGTCCCTGCTACTTATAAGCGAGTCTTGGCTTT
GGTAGAATTCCCTCCTCCCCCTGAGGGACGAGAAAGTGGGAGTGAGGAAG
GGGAAGAGGAGGAGGAAGGGAGCGCGGCTGACAGTGAAGACGAGGAGGGG
GGAGGGAGCGAGGAAGAAAGTGAAGAGGGCAGTGAGGATGATGAGAGGGA
AGAGGAAGACAAGAAGGTGGTGCCTCGTTCCCGGAGGGGAAGTAGGGCGA
CAGAGCTGGACGAAAGCGATGCCGAAGAGGAGGAAGGGGAGGGCGGAGAG
GCGGGAGAGGAGGACGAAGGAGAAGGGGGAGAAGATGGAGAAGAGAGGAG
TGTGACCAGCAAGGGTGGGAGGGTAAGGCGAGAGAGGGGGCCCAAAGCGG
GGAGGAATGGAGTGAGGGAGGGTCGAGGTGGTGGGGGAGGAGAGGGAGGT
AAAAGCATGAGTGGTGCCAGTAGCGTGGGCAGCACGGGAAGTAAGTCTGC
AGCGAGGACAAAAAGAGGCATCTCTTCGAGAACTGGGGGAGGAGGAGGGA
GGAGGAGGAGGAGGAGAGGGGACGAAGGAGGGAGTGACGAGGAGGCGGCG
GAGGAGGGAGGGGAGCAGGAGGGGTTGGAGGAGAGTGATGCCGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAGCGGGACAAGAAGAGGAGGAGGAGGAGGTCGAAGAGGAGGGC
AGTCGTCGTGGGCGTCGGAAACGGGCGGGGGGCAAGCCAACTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGGCAAGAAGGGTGTAAGGAAAGAAAAGC
AAGGTGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGAGGAGGAG
AAGGAGGAGGAAGAGGGAAATGAAGCCGAATCGGTCGCAAGAGGGAAAAA
AACGCGTTTTAGCCCACAATAGAAAAGCAGCAGCTGCTGCTTCTGATCCT
CCTACCGCTACCAACTCCTCCTCCTCGGGAGGTGGTCGTCCCTCCCTCCC
TCCATTGGCTGCGGCCAAACGCCGCATATGCATGCGTGTGTGGAACAAGG
CTAACCAACACCGTGTCGCTGGGACGTTTCGACACCCAGTCAACGAGGAC
GACGCCCCGGGCTATCACAAGGTAAGTCTTCCTTCC
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protein sequence of jgi.p|Nanoce1779_2|267821

>mRNA_9483-protein ID=mRNA_9483-protein|Name=jgi.p|Nanoce1779_2|267821|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MAPAPTANSTDHPTTSITASTMDVKELQAELSEMDDCVKFMQEEIDMLKS
GALDRRLKEVGAYSVPATYKRVLALVEFPPPPEGRESGSEEGEEEEEGSA
ADSEDEEGGGSEEESEEGSEDDEREEEDKKVVPRSRRGSRATELDESDAE
EEEGEGGEAGEEDEGEGGEDGEERSVTSKGGRVRRERGPKAGRNGVREGR
GGGGGEGGKSMSGASSVGSTGSKSAARTKRGISSRTGGGGGRRRRRRGDE
GGSDEEAAEEGGEQEGLEESDAEEEEEEEEEEEEEEEEEEEEEGAGQEEE
EEEVEEEGSRRGRRKRAGGKPTAAAAAAAAAAGKKGVRKEKQGEEEEEED
EEEEEEEEKEEEEGNEAESVARGKKTRFSPQ*
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mRNA from alignment at scaffold_34:101636..103121+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9483 ID=mRNA_9483|Name=jgi.p|Nanoce1779_2|267821|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp|location=Sequence derived from alignment at scaffold_34:101636..103121+ (Nannochloropsis oceanica)
GTCTCAGTCGTCCCCCCTCCCTCTTTCCATCCCCTCCTTCATAGGCAACA
CCATCATCATCGAGATTAAGACACAGGTCAAAGACACCGCCTAGAAATCA
CCCGCCCTCCTGGTCCCAAGGAATCAATGGCTCCTGCCCCGACGGCCAAC
AGCACCGACCACCCCACCACCAGCATCACGGCAAGCACCATGGATGTGAA
GGAGCTTCAGGCAGAGCTCTCCGAGATGGACGACTGTGTCAAATTCATGC
AAGAAGAGATTGATATGCTTAAAAGCGGGGCCTTAGACAGAAGGTTGAAG
GAGGTAGGGGCGTATTCAGTCCCTGCTACTTATAAGCGAGTCTTGGCTTT
GGTAGAATTCCCTCCTCCCCCTGAGGGACGAGAAAGTGGGAGTGAGGAAG
GGGAAGAGGAGGAGGAAGGGAGCGCGGCTGACAGTGAAGACGAGGAGGGG
GGAGGGAGCGAGGAAGAAAGTGAAGAGGGCAGTGAGGATGATGAGAGGGA
AGAGGAAGACAAGAAGGTGGTGCCTCGTTCCCGGAGGGGAAGTAGGGCGA
CAGAGCTGGACGAAAGCGATGCCGAAGAGGAGGAAGGGGAGGGCGGAGAG
GCGGGAGAGGAGGACGAAGGAGAAGGGGGAGAAGATGGAGAAGAGAGGAG
TGTGACCAGCAAGGGTGGGAGGGTAAGGCGAGAGAGGGGGCCCAAAGCGG
GGAGGAATGGAGTGAGGGAGGGTCGAGGTGGTGGGGGAGGAGAGGGAGGT
AAAAGCATGAGTGGTGCCAGTAGCGTGGGCAGCACGGGAAGTAAGTCTGC
AGCGAGGACAAAAAGAGGCATCTCTTCGAGAACTGGGGGAGGAGGAGGGA
GGAGGAGGAGGAGGAGAGGGGACGAAGGAGGGAGTGACGAGGAGGCGGCG
GAGGAGGGAGGGGAGCAGGAGGGGTTGGAGGAGAGTGATGCCGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAGCGGGACAAGAAGAGGAGGAGGAGGAGGTCGAAGAGGAGGGC
AGTCGTCGTGGGCGTCGGAAACGGGCGGGGGGCAAGCCAACTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGGCAAGAAGGGTGTAAGGAAAGAAAAGC
AAGGTGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGAGGAGGAG
AAGGAGGAGGAAGAGGGAAATGAAGCCGAATCGGTCGCAAGAGGGAAAAA
AACGCGTTTTAGCCCACAATAGAAAAGCAGCAGCTGCTGCTTCTGATCCT
CCTACCGCTACCAACTCCTCCTCCTCGGGAGGTGGTCGTCCCTCCCTCCC
TCCATTGGCTGCGGCCAAACGCCGCATATGCATGCGTGTGTGGAACAAGG
CTAACCAACACCGTGTCGCTGGGACGTTTCGACACCCAGTCAACGAGGAC
GACGCCCCGGGCTATCACAAGGTAAGTCTTCCTTCC
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Coding sequence (CDS) from alignment at scaffold_34:101636..103121+

>mRNA_9483 ID=mRNA_9483|Name=jgi.p|Nanoce1779_2|267821|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_34:101636..103121+ (Nannochloropsis oceanica)
ATGGCTCCTGCCCCGACGGCCAACAGCACCGACCACCCCACCACCAGCAT
CACGGCAAGCACCATGGATGTGAAGGAGCTTCAGGCAGAGCTCTCCGAGA
TGGACGACTGTGTCAAATTCATGCAAGAAGAGATTGATATGCTTAAAAGC
GGGGCCTTAGACAGAAGGTTGAAGGAGGTAGGGGCGTATTCAGTCCCTGC
TACTTATAAGCGAGTCTTGGCTTTGGTAGAATTCCCTCCTCCCCCTGAGG
GACGAGAAAGTGGGAGTGAGGAAGGGGAAGAGGAGGAGGAAGGGAGCGCG
GCTGACAGTGAAGACGAGGAGGGGGGAGGGAGCGAGGAAGAAAGTGAAGA
GGGCAGTGAGGATGATGAGAGGGAAGAGGAAGACAAGAAGGTGGTGCCTC
GTTCCCGGAGGGGAAGTAGGGCGACAGAGCTGGACGAAAGCGATGCCGAA
GAGGAGGAAGGGGAGGGCGGAGAGGCGGGAGAGGAGGACGAAGGAGAAGG
GGGAGAAGATGGAGAAGAGAGGAGTGTGACCAGCAAGGGTGGGAGGGTAA
GGCGAGAGAGGGGGCCCAAAGCGGGGAGGAATGGAGTGAGGGAGGGTCGA
GGTGGTGGGGGAGGAGAGGGAGGTAAAAGCATGAGTGGTGCCAGTAGCGT
GGGCAGCACGGGAAGTAAGTCTGCAGCGAGGACAAAAAGAGGCATCTCTT
CGAGAACTGGGGGAGGAGGAGGGAGGAGGAGGAGGAGGAGAGGGGACGAA
GGAGGGAGTGACGAGGAGGCGGCGGAGGAGGGAGGGGAGCAGGAGGGGTT
GGAGGAGAGTGATGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGCGGGACAAGAAGAGGAG
GAGGAGGAGGTCGAAGAGGAGGGCAGTCGTCGTGGGCGTCGGAAACGGGC
GGGGGGCAAGCCAACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCA
AGAAGGGTGTAAGGAAAGAAAAGCAAGGTGAGGAGGAGGAGGAAGAAGAT
GAAGAGGAAGAGGAGGAGGAGGAGAAGGAGGAGGAAGAGGGAAATGAAGC
CGAATCGGTCGCAAGAGGGAAAAAAACGCGTTTTAGCCCACAATAG
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Synonyms
Publications