jgi.p|Nanoce1779_2|606121, mRNA_9480 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606121
Unique NamemRNA_9480
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length885
Alignment locationscaffold_34:91635..92687 +

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Properties
Property NameValue
TranscriptId606207
TrackFilteredModels2
ProteinId606121
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:91635..92687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606121gene_9480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606121mRNA_9480-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9480CDS_9480Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9480 ID=mRNA_9480|Name=jgi.p|Nanoce1779_2|606121|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
AGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGATCGATGTTATCCCCAGTG
GTGGCGACGCCACTACCATTAACATTAACGCTGCTGCTGCTGCTGCTGCT
GCTGCTAGTGGTGGTGGAGACGATAATTTCGGCGTGTGCAAAGAAACGAC
GGGCTTCTTGGAGGTTTCCCATTTGCAGGAAAACGCGGCCGATTCGAGAC
AGCAGCTCGGCCTTGCAGAGAATGAGAAGGGGGAGGGAGGCCGAGGGCTG
TCCTCCCTCTCTTCCACTCTGCGTCATGGGAGAGGCGAAAGAGGAGGAGG
AGGGGGTCTGCTCTCCCTCCTTCCCTCCCTGCCCTTCCTGGGCTTCGAGG
AGGTCTTGTTCGAGGGAGCGGCGGACGCGCTCTAGAATGACGAGGGCGTT
CCGCCAGGATTTTTGGGAGAGATGGAGGGTCAGGAGGCTGAGGTCGGCCT
TGGCAAGCCACCATCTCACCTCTGCAGGGTTTAAGTCCACGGCGTCCGCC
AGGGCCAGCCTCCGCATCGACTGTGACAACACCTCCACCAACCTCCCTCC
CTCCTCCCCTTCCTCGTTCCCTCCTTTCCCCTCTTTCTCCCTCCGCCACC
GCTGCTGTTCCTCCTCTCCCTCCTTGCTCTCTTTCCCATACTCCTCTCCA
TTCCTTTCTCTCTTGACCCGCTGATATCGCTCTACCCGCTTTCTCAAAGT
TGCAAATGCCCTCTCCGCCTCCTCCCCCTCACCCAACCACACCCACGCAT
CAGCCACCAAAAAAAGCAACTGCAAGGGCATCCTCCCCACTCCTTCCTTC
CTCCCTCCCTCCTTCTCCTCCTCCTCCTCCCGCATCATCCGTCTCACTAT
CCTTTCCATCTCCTTCCTCCTCTCCAGTTTCCGCA
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protein sequence of jgi.p|Nanoce1779_2|606121

>mRNA_9480-protein ID=mRNA_9480-protein|Name=jgi.p|Nanoce1779_2|606121|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLSPVVATPLPLTLTLLLLLLLLLVVVETIISACAKKRRASWRFPICRKT
RPIRDSSSALQRMRRGREAEGCPPSLPLCVMGEAKEEEEGVCSPSFPPCP
SWASRRSCSRERRTRSRMTRAFRQDFWERWRVRRLRSALASHHLTSAGFK
STASARASLRIDCDNTSTNLPPSSPSSFPPFPSFSLRHRCCSSSPSLLSF
PYSSPFLSLLTR*
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mRNA from alignment at scaffold_34:91635..92687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9480 ID=mRNA_9480|Name=jgi.p|Nanoce1779_2|606121|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at scaffold_34:91635..92687+ (Nannochloropsis oceanica)
AGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGATCGATGTTATCCCCAGTG
GTGGCGACGCCACTACCATTAACATTAACGCTGCTGCTGCTGCTGCTGCT
GCTGCTAGTGGTGGTGGAGACGATAATTTCGGCGTGTGCAAAGAAACGAC
GGGCTTCTTGGAGGTTTCCCATTTGCAGGAAAACGCGGCCGATTCGAGAC
AGCAGCTCGGCCTTGCAGAGAATGAGAAGGGGGAGGGAGGCCGAGGGCTG
TCCTCCCTCTCTTCCACTCTGCGTCATGGGAGAGGCGAAAGAGGAGGAGG
AGGGGGTCTGCTCTCCCTCCTTCCCTCCCTGCCCTTCCTGGGCTTCGAGG
AGGTCTTGTTCGAGGGAGCGGCGGACGCGCTCTAGAATGACGAGGGCGTT
CCGCCAGGATTTTTGGGAGAGATGGAGGGTCAGGAGGCTGAGGTCGGCCT
GGGGAGGGAGGTAGGGAAGGATAGAGGGAGGGAGGGAGGAAGGGAGCGGT
GGTAGTACTGTGAATGGATTGGTGTGTGTGTTCGAGGAGGAGGAAAAGAG
GGAGGGAGGGAAGGACGGAGGGAGGAAGGGAGGGAGGGAGGGACAATACC
ACCTCCCCACACGTACCTTGGCAAGCCACCATCTCACCTCTGCAGGGTTT
AAGTCCACGGCGTCCGCCAGGGCCAGCCTCCGCATCGACTGTGACAACAC
CTCCACCAACCTCCCTCCCTCCTCCCCTTCCTCGTTCCCTCCTTTCCCCT
CTTTCTCCCTCCGCCACCGCTGCTGTTCCTCCTCTCCCTCCTTGCTCTCT
TTCCCATACTCCTCTCCATTCCTTTCTCTCTTGACCCGCTGATATCGCTC
TACCCGCTTTCTCAAAGTTGCAAATGCCCTCTCCGCCTCCTCCCCCTCAC
CCAACCACACCCACGCATCAGCCACCAAAAAAAGCAACTGCAAGGGCATC
CTCCCCACTCCTTCCTTCCTCCCTCCCTCCTTCTCCTCCTCCTCCTCCCG
CATCATCCGTCTCACTATCCTTTCCATCTCCTTCCTCCTCTCCAGTTTCC
GCA
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Coding sequence (CDS) from alignment at scaffold_34:91635..92687+

>mRNA_9480 ID=mRNA_9480|Name=jgi.p|Nanoce1779_2|606121|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_34:91635..92687+ (Nannochloropsis oceanica)
ATGTTATCCCCAGTGGTGGCGACGCCACTACCATTAACATTAACGCTGCT
GCTGCTGCTGCTGCTGCTGCTAGTGGTGGTGGAGACGATAATTTCGGCGT
GTGCAAAGAAACGACGGGCTTCTTGGAGGTTTCCCATTTGCAGGAAAACG
CGGCCGATTCGAGACAGCAGCTCGGCCTTGCAGAGAATGAGAAGGGGGAG
GGAGGCCGAGGGCTGTCCTCCCTCTCTTCCACTCTGCGTCATGGGAGAGG
CGAAAGAGGAGGAGGAGGGGGTCTGCTCTCCCTCCTTCCCTCCCTGCCCT
TCCTGGGCTTCGAGGAGGTCTTGTTCGAGGGAGCGGCGGACGCGCTCTAG
AATGACGAGGGCGTTCCGCCAGGATTTTTGGGAGAGATGGAGGGTCAGGA
GGCTGAGGTCGGCCTTGGCAAGCCACCATCTCACCTCTGCAGGGTTTAAG
TCCACGGCGTCCGCCAGGGCCAGCCTCCGCATCGACTGTGACAACACCTC
CACCAACCTCCCTCCCTCCTCCCCTTCCTCGTTCCCTCCTTTCCCCTCTT
TCTCCCTCCGCCACCGCTGCTGTTCCTCCTCTCCCTCCTTGCTCTCTTTC
CCATACTCCTCTCCATTCCTTTCTCTCTTGACCCGCTGAATGTTATCCCC
AGTGGTGGCGACGCCACTACCATTAACATTAACGCTGCTGCTGCTGCTGC
TGCTGCTGCTAGTGGTGGTGGAGACGATAATTTCGGCGTGTGCAAAGAAA
CGACGGGCTTCTTGGAGGTTTCCCATTTGCAGGAAAACGCGGCCGATTCG
AGACAGCAGCTCGGCCTTGCAGAGAATGAGAAGGGGGAGGGAGGCCGAGG
GCTGTCCTCCCTCTCTTCCACTCTGCGTCATGGGAGAGGCGAAAGAGGAG
GAGGAGGGGGTCTGCTCTCCCTCCTTCCCTCCCTGCCCTTCCTGGGCTTC
GAGGAGGTCTTGTTCGAGGGAGCGGCGGACGCGCTCTAGAATGACGAGGG
CGTTCCGCCAGGATTTTTGGGAGAGATGGAGGGTCAGGAGGCTGAGGTCG
GCCTTGGCAAGCCACCATCTCACCTCTGCAGGGTTTAAGTCCACGGCGTC
CGCCAGGGCCAGCCTCCGCATCGACTGTGACAACACCTCCACCAACCTCC
CTCCCTCCTCCCCTTCCTCGTTCCCTCCTTTCCCCTCTTTCTCCCTCCGC
CACCGCTGCTGTTCCTCCTCTCCCTCCTTGCTCTCTTTCCCATACTCCTC
TCCATTCCTTTCTCTCTTGACCCGCTGA
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Synonyms
Publications