jgi.p|Nanoce1779_2|574775, mRNA_948 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574775
Unique Name	mRNA_948
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1702
Alignment location	scaffold_2:826901..828602 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574861
Track	FilteredModels2
ProteinId	574775

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:826901..828602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574775	gene_948	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574775	mRNA_948-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_948	CDS_948	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:826901..828602+
coding sequence from alignment at scaffold_2:826901..828602+

mRNA sequence

>mRNA_948 ID=mRNA_948|Name=jgi.p|Nanoce1779_2|574775|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp
AGTCCCTTCCTGACACGCACGATCACAGGAGATCCGTATGTTGGTGGGCG
AAGGACCCAGAAACCTTTGTTCGCCCTTGATCTCCTTGGGCCTCCCACTT
CTACTCTCACTCTTCCTCAACGCCACCACGCACGCTTTTGTGAGAATATC
GCCCATGCCCATCCGCAAGCTTTTCACCTCGTCCACACCGCCCGCCTCGT
CTCCCACATCATCGTCGACCGGTAGCGGCAGCTCTTCTTATGGCAGCGCC
CGCAATAGTTTGCCGGGGCACTTCCGCTTCCCCAGCACGCGTCAGAGCAA
GGGCAGCAGCTCTCAAGTCACATCGGTGGAGGACGACAGTGACCAAGCGT
CCGTTTCCTCTTCCATGGTGGGCTTCCACGGTTGCTCGTCGATCGGTACT
CGTGACGATGACGACGATGACGGCGGCGAAGCCCTTAACGGTGACCAAGG
GGAGCACCAACGCCGGTCCTCCCTACCCAACACGCAAGAGGTTTTGGCCT
CTTTCCTCGCTCGCGACTTCCAACCTTCGCCATGGCTTACGAATGAACAC
TGGCAAACCATTTGGGGTGCTCGAGCTATTCAAGACATTGTAATGAAAAA
GCTGGCGCCCAACACCTTGCCGCAAGGATGGAAGGATGTGTATGATCGAC
GCGAGCGGTGGGAGACGCCCGATGGGGACTTTTTCCACGTGGATTTCTTA
TTCTGTGACGGCCATCCTGCCGCCACTTCCTCATCACCACGGCCACTAGC
GATTGTCTTGCATGGTCTAGAGTCCACCTCATGGGCGCTGCTGCCGCGTT
CCATGGCCAAGGCTTACGTTCAACGAGGCTTCGACGTCCTCGCCCTGAAC
TTCCGCGGCTGTTGTGGAGTTGATAACCTCAAGCCCTACTCCTACCACCT
GGGGTTCACGGACGATTTGACTTACGTACTCCGCCGCCTGCACGCCGAGG
ACCCCTGCCGTCGTGTGTATTTGACTGGCTTCTCGCTTGGCGGGAATGTT
ATTCTTAAGTGTTTGGGAGAGCTGGGGGAGGATGCGGTCAGCCTAGGCGT
GGAAGGGGCGGCGGTGGCCTGCGTGCCCTTCGATGCCGTGCGCTCCTCCA
GTAAGATCGACACGGGTTTCAATCGATGGGTGTATGCGGACAACTTTTTG
AAAACGCTCAAAGTGAAGGCGGCGCAGAAATGGAAGAAGCACAGGGAGTC
CTTGGACGGGGAGGAGCTGGGGGAGGGCCCTTACGACCTGGAGCGAGTGC
TGGCTTGTTCTCGCATCGGGGATTTTGACGACGAGGTAATTGCCAAGCTG
CACAATTTTGATGGTAAAGTGGACTACTACACGCAGAGCTGCTCTAAGCA
ATACCTGCCTCGCATCCGGATTCCAGCTCTAGTGATAAACGCGCGCGATG
ACCCTTTCATCAACGAGAATGGCTTACCAGCGCCGGATGAGGTTGGAGAG
GGTACAGTTCGCCTGGTATATCATAAGCATGGTGGGCATTGTGGATTTTT
AACAGGGCAGGAGGAGAAAGGGCATCGAGAGGAGGAACGGTGGCTTCCCA
CTGAATTGGCGCGTTTTTTGATGCACGTTGACGTGCCGTTTCGTGCACTG
GAGAGAAATGACGACTGTAGTGATGTTGGGGAGAATTGGGCAGGCGAGAG
CCAGTCTGTGTTTGCGGTGAAATGAAAAAGAAGTGTAGATGTATACTAGA
AT

protein sequence of jgi.p|Nanoce1779_2|574775

>mRNA_948-protein ID=mRNA_948-protein|Name=jgi.p|Nanoce1779_2|574775|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MLVGEGPRNLCSPLISLGLPLLLSLFLNATTHAFVRISPMPIRKLFTSST
PPASSPTSSSTGSGSSSYGSARNSLPGHFRFPSTRQSKGSSSQVTSVEDD
SDQASVSSSMVGFHGCSSIGTRDDDDDDGGEALNGDQGEHQRRSSLPNTQ
EVLASFLARDFQPSPWLTNEHWQTIWGARAIQDIVMKKLAPNTLPQGWKD
VYDRRERWETPDGDFFHVDFLFCDGHPAATSSSPRPLAIVLHGLESTSWA
LLPRSMAKAYVQRGFDVLALNFRGCCGVDNLKPYSYHLGFTDDLTYVLRR
LHAEDPCRRVYLTGFSLGGNVILKCLGELGEDAVSLGVEGAAVACVPFDA
VRSSSKIDTGFNRWVYADNFLKTLKVKAAQKWKKHRESLDGEELGEGPYD
LERVLACSRIGDFDDEVIAKLHNFDGKVDYYTQSCSKQYLPRIRIPALVI
NARDDPFINENGLPAPDEVGEGTVRLVYHKHGGHCGFLTGQEEKGHREEE
RWLPTELARFLMHVDVPFRALERNDDCSDVGENWAGESQSVFAVK*

mRNA from alignment at scaffold_2:826901..828602+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_948 ID=mRNA_948|Name=jgi.p|Nanoce1779_2|574775|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at scaffold_2:826901..828602+ (Nannochloropsis oceanica)
AGTCCCTTCCTGACACGCACGATCACAGGAGATCCGTATGTTGGTGGGCG
AAGGACCCAGAAACCTTTGTTCGCCCTTGATCTCCTTGGGCCTCCCACTT
CTACTCTCACTCTTCCTCAACGCCACCACGCACGCTTTTGTGAGAATATC
GCCCATGCCCATCCGCAAGCTTTTCACCTCGTCCACACCGCCCGCCTCGT
CTCCCACATCATCGTCGACCGGTAGCGGCAGCTCTTCTTATGGCAGCGCC
CGCAATAGTTTGCCGGGGCACTTCCGCTTCCCCAGCACGCGTCAGAGCAA
GGGCAGCAGCTCTCAAGTCACATCGGTGGAGGACGACAGTGACCAAGCGT
CCGTTTCCTCTTCCATGGTGGGCTTCCACGGTTGCTCGTCGATCGGTACT
CGTGACGATGACGACGATGACGGCGGCGAAGCCCTTAACGGTGACCAAGG
GGAGCACCAACGCCGGTCCTCCCTACCCAACACGCAAGAGGTTTTGGCCT
CTTTCCTCGCTCGCGACTTCCAACCTTCGCCATGGCTTACGAATGAACAC
TGGCAAACCATTTGGGGTGCTCGAGCTATTCAAGACATTGTAATGAAAAA
GCTGGCGCCCAACACCTTGCCGCAAGGATGGAAGGATGTGTATGATCGAC
GCGAGCGGTGGGAGACGCCCGATGGGGACTTTTTCCACGTGGATTTCTTA
TTCTGTGACGGCCATCCTGCCGCCACTTCCTCATCACCACGGCCACTAGC
GATTGTCTTGCATGGTCTAGAGTCCACCTCATGGGCGCTGCTGCCGCGTT
CCATGGCCAAGGCTTACGTTCAACGAGGCTTCGACGTCCTCGCCCTGAAC
TTCCGCGGCTGTTGTGGAGTTGATAACCTCAAGCCCTACTCCTACCACCT
GGGGTTCACGGACGATTTGACTTACGTACTCCGCCGCCTGCACGCCGAGG
ACCCCTGCCGTCGTGTGTATTTGACTGGCTTCTCGCTTGGCGGGAATGTT
ATTCTTAAGTGTTTGGGAGAGCTGGGGGAGGATGCGGTCAGCCTAGGCGT
GGAAGGGGCGGCGGTGGCCTGCGTGCCCTTCGATGCCGTGCGCTCCTCCA
GTAAGATCGACACGGGTTTCAATCGATGGGTGTATGCGGACAACTTTTTG
AAAACGCTCAAAGTGAAGGCGGCGCAGAAATGGAAGAAGCACAGGGAGTC
CTTGGACGGGGAGGAGCTGGGGGAGGGCCCTTACGACCTGGAGCGAGTGC
TGGCTTGTTCTCGCATCGGGGATTTTGACGACGAGGTAATTGCCAAGCTG
CACAATTTTGATGGTAAAGTGGACTACTACACGCAGAGCTGCTCTAAGCA
ATACCTGCCTCGCATCCGGATTCCAGCTCTAGTGATAAACGCGCGCGATG
ACCCTTTCATCAACGAGAATGGCTTACCAGCGCCGGATGAGGTTGGAGAG
GGTACAGTTCGCCTGGTATATCATAAGCATGGTGGGCATTGTGGATTTTT
AACAGGGCAGGAGGAGAAAGGGCATCGAGAGGAGGAACGGTGGCTTCCCA
CTGAATTGGCGCGTTTTTTGATGCACGTTGACGTGCCGTTTCGTGCACTG
GAGAGAAATGACGACTGTAGTGATGTTGGGGAGAATTGGGCAGGCGAGAG
CCAGTCTGTGTTTGCGGTGAAATGAAAAAGAAGTGTAGATGTATACTAGA
AT

Coding sequence (CDS) from alignment at scaffold_2:826901..828602+

>mRNA_948 ID=mRNA_948|Name=jgi.p|Nanoce1779_2|574775|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_2:826901..828602+ (Nannochloropsis oceanica)
ATGTTGGTGGGCGAAGGACCCAGAAACCTTTGTTCGCCCTTGATCTCCTT
GGGCCTCCCACTTCTACTCTCACTCTTCCTCAACGCCACCACGCACGCTT
TTGTGAGAATATCGCCCATGCCCATCCGCAAGCTTTTCACCTCGTCCACA
CCGCCCGCCTCGTCTCCCACATCATCGTCGACCGGTAGCGGCAGCTCTTC
TTATGGCAGCGCCCGCAATAGTTTGCCGGGGCACTTCCGCTTCCCCAGCA
CGCGTCAGAGCAAGGGCAGCAGCTCTCAAGTCACATCGGTGGAGGACGAC
AGTGACCAAGCGTCCGTTTCCTCTTCCATGGTGGGCTTCCACGGTTGCTC
GTCGATCGGTACTCGTGACGATGACGACGATGACGGCGGCGAAGCCCTTA
ACGGTGACCAAGGGGAGCACCAACGCCGGTCCTCCCTACCCAACACGCAA
GAGGTTTTGGCCTCTTTCCTCGCTCGCGACTTCCAACCTTCGCCATGGCT
TACGAATGAACACTGGCAAACCATTTGGGGTGCTCGAGCTATTCAAGACA
TTGTAATGAAAAAGCTGGCGCCCAACACCTTGCCGCAAGGATGGAAGGAT
GTGTATGATCGACGCGAGCGGTGGGAGACGCCCGATGGGGACTTTTTCCA
CGTGGATTTCTTATTCTGTGACGGCCATCCTGCCGCCACTTCCTCATCAC
CACGGCCACTAGCGATTGTCTTGCATGGTCTAGAGTCCACCTCATGGGCG
CTGCTGCCGCGTTCCATGGCCAAGGCTTACGTTCAACGAGGCTTCGACGT
CCTCGCCCTGAACTTCCGCGGCTGTTGTGGAGTTGATAACCTCAAGCCCT
ACTCCTACCACCTGGGGTTCACGGACGATTTGACTTACGTACTCCGCCGC
CTGCACGCCGAGGACCCCTGCCGTCGTGTGTATTTGACTGGCTTCTCGCT
TGGCGGGAATGTTATTCTTAAGTGTTTGGGAGAGCTGGGGGAGGATGCGG
TCAGCCTAGGCGTGGAAGGGGCGGCGGTGGCCTGCGTGCCCTTCGATGCC
GTGCGCTCCTCCAGTAAGATCGACACGGGTTTCAATCGATGGGTGTATGC
GGACAACTTTTTGAAAACGCTCAAAGTGAAGGCGGCGCAGAAATGGAAGA
AGCACAGGGAGTCCTTGGACGGGGAGGAGCTGGGGGAGGGCCCTTACGAC
CTGGAGCGAGTGCTGGCTTGTTCTCGCATCGGGGATTTTGACGACGAGGT
AATTGCCAAGCTGCACAATTTTGATGGTAAAGTGGACTACTACACGCAGA
GCTGCTCTAAGCAATACCTGCCTCGCATCCGGATTCCAGCTCTAGTGATA
AACGCGCGCGATGACCCTTTCATCAACGAGAATGGCTTACCAGCGCCGGA
TGAGGTTGGAGAGGGTACAGTTCGCCTGGTATATCATAAGCATGGTGGGC
ATTGTGGATTTTTAACAGGGCAGGAGGAGAAAGGGCATCGAGAGGAGGAA
CGGTGGCTTCCCACTGAATTGGCGCGTTTTTTGATGCACGTTGACGTGCC
GTTTCGTGCACTGGAGAGAAATGACGACTGTAGTGATGTTGGGGAGAATT
GGGCAGGCGAGAGCCAGTCTGTGTTTGCGGTGAAATGA

Synonyms

Publications