jgi.p|Nanoce1779_2|606119, mRNA_9479 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606119
Unique NamemRNA_9479
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length644
Alignment locationscaffold_34:90721..91695 -

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Properties
Property NameValue
TranscriptId606205
TrackFilteredModels2
ProteinId606119
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:90721..91695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606119gene_9479Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606119mRNA_9479-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9479CDS_9479Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9479 ID=mRNA_9479|Name=jgi.p|Nanoce1779_2|606119|organism=Nannochloropsis oceanica|type=mRNA|length=644bp
GGCGTCGCCACCACTGGGGATAACATCGATCCTCCCTCCCGCCCTCCCTC
CCGCCCTCCCTCTCCCTTGGGCTGGGCGGAGGCGCAAGTAGGAATGGGAA
GGGGTCTGATGGCCGTGGCGGAGGGAAGGTGGGAGGAGGCCAGACAGTCT
TTCGAAGGAGTCGCAGCAGCAGAAAGGACGAGACTAGCTGAAGCCCCCTT
CATCTTCACTAGCAGCGACTCCTCCTTTCTCCCTTCTTCGTCCCCCTCTT
CCCCCTCCTCCTCCTCCCCCTGGCCCTACCTCCTCCTCCCCTCCCCTGAC
GAGACCCTCCTCCCTCCCGCCCTCACCAACTTGGCCGTCCTCGCTCTCTA
TCGAGGAGACGTGCACAAGGCCATCGCCATTCTAGAAAGTTTCCTCAAGG
ATGATCCCCCCAGGAATATGACAGAAAGCCTCCTCCTCAATCTCTCCTAC
CTCTACGAGCTCGTGGGCGACAAGGCCTGTCGCGAGGAGAAGATGAAAGT
GTTGGAGACAGTGGCGCGCCGGTTCCGGTTGGATGATATCGAAGCACGCT
TTTTCAGTTAGTTAGGGAAAAATCAGGGGAGATATGGAGGAAGGAGGGAA
GCAGGTATAGATTTTGAAAAATAACATGGAATTCTGCTATTGAA
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protein sequence of jgi.p|Nanoce1779_2|606119

>mRNA_9479-protein ID=mRNA_9479-protein|Name=jgi.p|Nanoce1779_2|606119|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MGRGLMAVAEGRWEEARQSFEGVAAAERTRLAEAPFIFTSSDSSFLPSSS
PSSPSSSSPWPYLLLPSPDETLLPPALTNLAVLALYRGDVHKAIAILESF
LKDDPPRNMTESLLLNLSYLYELVGDKACREEKMKVLETVARRFRLDDIE
ARFFS*
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mRNA from alignment at scaffold_34:90721..91695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9479 ID=mRNA_9479|Name=jgi.p|Nanoce1779_2|606119|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at scaffold_34:90721..91695- (Nannochloropsis oceanica)
GGCGTCGCCACCACTGGGGATAACATCGATCCTCCCTCCCGCCCTCCCTC
CCGCCCTCCCTCTCCCTTGGGCTGGGCGGAGGCGCAAGTAGGAATGGGAA
GGGGTCTGATGGCCGTGGCGGAGGGAAGGTGGGAGGAGGCCAGACAGTCT
TTCGAAGGAGTCGCAGCAGCAGAAAGGACGAGACTAGCTGAGTAAGGAGG
GAGGGGAGGAGGAAGGGAAAAGGATTGGGAAGGAAGGAGGGGTGTCTACA
ATTCGGGAATAGTCATTCTATGCATCTTCCTGCACTTACTATCCCCACAT
CATTCCTATCCTCCCTCCTTCCTTCCTTCCCTTCCTCCCTCCCTCGCCTA
ATCGACTCAGAGCCCCCTTCATCTTCACTAGCAGCGACTCCTCCTTTCTC
CCTTCTTCGTCCCCCTCTTCCCCCTCCTCCTCCTCCCCCTGGCCCTACCT
CCTCCTCCCCTCCCCTGACGAGACCCTCCTCCCTCCCGCCCTCACCAACT
TGGCCGTCCTCGCTCTCTATCGAGGAGACGTGCACAAGGCCATCGCCATT
CTAGAAAGTTTCCTCAAGGATGATCCCCCCAGGAATATGACAGAAAGCCT
CCTCCTCAATCTCTCCTACCTCTACGAGCTCGTGGGCGACAAGTACGTAC
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCCTCCCTCT
CTCTCCTGGCCTGCCGTTTTTTTTTGTCAGCTCCGATGACTCACTTTTGC
GCCCTCCCTCCCCCCCTCCCTCGCTCTCTTCTTTCCCCCTTTTCTTCCCA
CCAGGGCCTGTCGCGAGGAGAAGATGAAAGTGTTGGAGACAGTGGCGCGC
CGGTTCCGGTTGGATGATATCGAAGCACGCTTTTTCAGTTAGTTAGGGAA
AAATCAGGGGAGATATGGAGGAAGGAGGGAAGCAGGTATAGATTTTGAAA
AATAACATGGAATTCTGCTATTGAA
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Coding sequence (CDS) from alignment at scaffold_34:90721..91695-

>mRNA_9479 ID=mRNA_9479|Name=jgi.p|Nanoce1779_2|606119|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_34:90721..91695- (Nannochloropsis oceanica)
GGCCTGTCGCGAGGAGAAGATGAAAGTGTTGGAGACAGTGGCGCGCCGGT
TCCGGTTGGATGATATCGAAGCACGCTTTTTCAGTTAGAGCCCCCTTCAT
CTTCACTAGCAGCGACTCCTCCTTTCTCCCTTCTTCGTCCCCCTCTTCCC
CCTCCTCCTCCTCCCCCTGGCCCTACCTCCTCCTCCCCTCCCCTGACGAG
ACCCTCCTCCCTCCCGCCCTCACCAACTTGGCCGTCCTCGCTCTCTATCG
AGGAGACGTGCACAAGGCCATCGCCATTCTAGAAAGTTTCCTCAAGGATG
ATCCCCCCAGGAATATGACAGAAAGCCTCCTCCTCAATCTCTCCTACCTC
TACGAGCTCGTGGGCGACAAATGGGAAGGGGTCTGATGGCCGTGGCGGAG
GGAAGGTGGGAGGAGGCCAGACAGTCTTTCGAAGGAGTCGCAGCAGCAGA
AAGGACGAGACTAGCTGAGGCCTGTCGCGAGGAGAAGATGAAAGTGTTGG
AGACAGTGGCGCGCCGGTTCCGGTTGGATGATATCGAAGCACGCTTTTTC
AGTTAGAGCCCCCTTCATCTTCACTAGCAGCGACTCCTCCTTTCTCCCTT
CTTCGTCCCCCTCTTCCCCCTCCTCCTCCTCCCCCTGGCCCTACCTCCTC
CTCCCCTCCCCTGACGAGACCCTCCTCCCTCCCGCCCTCACCAACTTGGC
CGTCCTCGCTCTCTATCGAGGAGACGTGCACAAGGCCATCGCCATTCTAG
AAAGTTTCCTCAAGGATGATCCCCCCAGGAATATGACAGAAAGCCTCCTC
CTCAATCTCTCCTACCTCTACGAGCTCGTGGGCGACAAATGGGAAGGGGT
CTGATGGCCGTGGCGGAGGGAAGGTGGGAGGAGGCCAGACAGTCTTTCGA
AGGAGTCGCAGCAGCAGAAAGGACGAGACTAGCTGAGGCCTGTCGCGAGG
AGAAGATGAAAGTGTTGGAGACAGTGGCGCGCCGGTTCCGGTTGGATGAT
ATCGAAGCACGCTTTTTCAGTTAGAGCCCCCTTCATCTTCACTAGCAGCG
ACTCCTCCTTTCTCCCTTCTTCGTCCCCCTCTTCCCCCTCCTCCTCCTCC
CCCTGGCCCTACCTCCTCCTCCCCTCCCCTGACGAGACCCTCCTCCCTCC
CGCCCTCACCAACTTGGCCGTCCTCGCTCTCTATCGAGGAGACGTGCACA
AGGCCATCGCCATTCTAGAAAGTTTCCTCAAGGATGATCCCCCCAGGAAT
ATGACAGAAAGCCTCCTCCTCAATCTCTCCTACCTCTACGAGCTCGTGGG
CGACAAATGGGAAGGGGTCTGATGGCCGTGGCGGAGGGAAGGTGGGAGGA
GGCCAGACAGTCTTTCGAAGGAGTCGCAGCAGCAGAAAGGACGAGACTAG
CTGA
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Synonyms
Publications