jgi.p|Nanoce1779_2|606117, mRNA_9478 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606117
Unique NamemRNA_9478
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length802
Alignment locationscaffold_34:89164..89965 +

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Properties
Property NameValue
TranscriptId606203
TrackFilteredModels2
ProteinId606117
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:89164..89965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606117gene_9478Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606117mRNA_9478-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9478CDS_9478Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9478 ID=mRNA_9478|Name=jgi.p|Nanoce1779_2|606117|organism=Nannochloropsis oceanica|type=mRNA|length=802bp
CATTTCCAACTTGATTTGTTCCTCCTCCTCCTTCCCCTCCTCTTCTTCCT
TCTCCTCCTCCTCCTCTTCCCCCGCCTCCTCTATCCCGAACTCACCAGCC
ACGTCGACGCCTCGCACCTCTCCACCTTCGACTTTTCGTCCCTCTTTTCC
TTCCTCCCTTCTCCTTGCTCCTCCTTCCTCCTCTCCATGGCTGCCAGACA
ACCCTAGGTAAGCGTCAGCAGCAGAAGCCGACAAACTATTGAAATGCTCC
ACCACCTGCTCGTCCTGCTTCAATGAGGACGATGACTTTAAGGCCTCTAT
CCCCCTTCTTGTGGGAACTTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCT
GCTCCTGCTGCTCCTGCAGCTCCTGTCTCCACATGCTGCTGCTGCTGCTG
TTGCTACTGATTCTGGCGTTACAAAGGGTATGTCCACCCCCTGTTACCGC
AACTGCTTTCTCCTTTGCCCCGATGCCCTTGCCGTTGCCATCATTGCCGC
CGGCATTGGGACCGCGCCTTTCATCCTCCTGTTCCTTGTCGTTCTCTCGC
TCTTCTTCGTCTTCATATTCCTCGATAATGAGCTGTGCCGTCTTGAACAA
AGGCTCCTGCTGTCTTGATCTTCCTTTGTCGTTTATCTCCCCTTCATCAC
CTACATAACTGGGGAGAGGAGGCACGGGGGGCATGCGCTGCTGCTGATGC
TGCTGCTTTTGAATTTGGCGATACACTCCGGGCACAACCATACACTCGTC
TGAGCCCTCCTCCTCAGCGTCTTGCATGGGGATAGATTGCCAGCTTGTGC
TG
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protein sequence of jgi.p|Nanoce1779_2|606117

>mRNA_9478-protein ID=mRNA_9478-protein|Name=jgi.p|Nanoce1779_2|606117|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MLLLLLLLLILALQRVCPPPVTATAFSFAPMPLPLPSLPPALGPRLSSSC
SLSFSRSSSSSYSSIMSCAVLNKGSCCLDLPLSFISPSSPT*
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mRNA from alignment at scaffold_34:89164..89965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9478 ID=mRNA_9478|Name=jgi.p|Nanoce1779_2|606117|organism=Nannochloropsis oceanica|type=mRNA|length=802bp|location=Sequence derived from alignment at scaffold_34:89164..89965+ (Nannochloropsis oceanica)
CATTTCCAACTTGATTTGTTCCTCCTCCTCCTTCCCCTCCTCTTCTTCCT
TCTCCTCCTCCTCCTCTTCCCCCGCCTCCTCTATCCCGAACTCACCAGCC
ACGTCGACGCCTCGCACCTCTCCACCTTCGACTTTTCGTCCCTCTTTTCC
TTCCTCCCTTCTCCTTGCTCCTCCTTCCTCCTCTCCATGGCTGCCAGACA
ACCCTAGGTAAGCGTCAGCAGCAGAAGCCGACAAACTATTGAAATGCTCC
ACCACCTGCTCGTCCTGCTTCAATGAGGACGATGACTTTAAGGCCTCTAT
CCCCCTTCTTGTGGGAACTTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCT
GCTCCTGCTGCTCCTGCAGCTCCTGTCTCCACATGCTGCTGCTGCTGCTG
TTGCTACTGATTCTGGCGTTACAAAGGGTATGTCCACCCCCTGTTACCGC
AACTGCTTTCTCCTTTGCCCCGATGCCCTTGCCGTTGCCATCATTGCCGC
CGGCATTGGGACCGCGCCTTTCATCCTCCTGTTCCTTGTCGTTCTCTCGC
TCTTCTTCGTCTTCATATTCCTCGATAATGAGCTGTGCCGTCTTGAACAA
AGGCTCCTGCTGTCTTGATCTTCCTTTGTCGTTTATCTCCCCTTCATCAC
CTACATAACTGGGGAGAGGAGGCACGGGGGGCATGCGCTGCTGCTGATGC
TGCTGCTTTTGAATTTGGCGATACACTCCGGGCACAACCATACACTCGTC
TGAGCCCTCCTCCTCAGCGTCTTGCATGGGGATAGATTGCCAGCTTGTGC
TG
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Coding sequence (CDS) from alignment at scaffold_34:89164..89965+

>mRNA_9478 ID=mRNA_9478|Name=jgi.p|Nanoce1779_2|606117|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_34:89164..89965+ (Nannochloropsis oceanica)
ATGCTGCTGCTGCTGCTGTTGCTACTGATTCTGGCGTTACAAAGGGTATG
TCCACCCCCTGTTACCGCAACTGCTTTCTCCTTTGCCCCGATGCCCTTGC
CGTTGCCATCATTGCCGCCGGCATTGGGACCGCGCCTTTCATCCTCCTGT
TCCTTGTCGTTCTCTCGCTCTTCTTCGTCTTCATATTCCTCGATAATGAG
CTGTGCCGTCTTGAACAAAGGCTCCTGCTGTCTTGATCTTCCTTTGTCGT
TTATCTCCCCTTCATCACCTACATAA
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Synonyms
Publications