jgi.p|Nanoce1779_2|606104, mRNA_9474 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606104
Unique NamemRNA_9474
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length352
Alignment locationscaffold_34:73640..73991 +

Link to JBrowse

Properties
Property NameValue
TranscriptId606190
TrackFilteredModels2
ProteinId606104
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:73640..73991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606104gene_9474Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606104mRNA_9474-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9474CDS_9474Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9474 ID=mRNA_9474|Name=jgi.p|Nanoce1779_2|606104|organism=Nannochloropsis oceanica|type=mRNA|length=352bp
CCGTCGTTTGGGACGAGTGCGTCGGTCAATGCAAGCTTTCGCTCTCAGAG
TTCTGTTTATTTTGCTGGTGCCGTTACTGTGGCTTTCGTCTCCGGTGCAG
AAAATGTTAATCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCAATTGA
ATTTATCTCTAGCTTGGCTCCAAAAATATGTGCTTTGATTGATTGACCTT
TACCACCAGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGGTAAGTACAAC
TACTTTTCCACCGCTGCTATTCCTTCTTTTTCTTTTACGGGGGATGTAAT
TCTATACTTTCTACCACTGGCCATCTTTTAAAATCTCCTTCCTCCCCCTC
CT
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protein sequence of jgi.p|Nanoce1779_2|606104

>mRNA_9474-protein ID=mRNA_9474-protein|Name=jgi.p|Nanoce1779_2|606104|organism=Nannochloropsis oceanica|type=polypeptide|length=56bp
MQAFALRVLFILLVPLLWLSSPVQKMLILLLLLLLPLLPIEFISSLAPKI
CALID*
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mRNA from alignment at scaffold_34:73640..73991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9474 ID=mRNA_9474|Name=jgi.p|Nanoce1779_2|606104|organism=Nannochloropsis oceanica|type=mRNA|length=352bp|location=Sequence derived from alignment at scaffold_34:73640..73991+ (Nannochloropsis oceanica)
CCGTCGTTTGGGACGAGTGCGTCGGTCAATGCAAGCTTTCGCTCTCAGAG
TTCTGTTTATTTTGCTGGTGCCGTTACTGTGGCTTTCGTCTCCGGTGCAG
AAAATGTTAATCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCAATTGA
ATTTATCTCTAGCTTGGCTCCAAAAATATGTGCTTTGATTGATTGACCTT
TACCACCAGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGGTAAGTACAAC
TACTTTTCCACCGCTGCTATTCCTTCTTTTTCTTTTACGGGGGATGTAAT
TCTATACTTTCTACCACTGGCCATCTTTTAAAATCTCCTTCCTCCCCCTC
CT
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Coding sequence (CDS) from alignment at scaffold_34:73640..73991+

>mRNA_9474 ID=mRNA_9474|Name=jgi.p|Nanoce1779_2|606104|organism=Nannochloropsis oceanica|type=CDS|length=168bp|location=Sequence derived from alignment at scaffold_34:73640..73991+ (Nannochloropsis oceanica)
ATGCAAGCTTTCGCTCTCAGAGTTCTGTTTATTTTGCTGGTGCCGTTACT
GTGGCTTTCGTCTCCGGTGCAGAAAATGTTAATCCTCCTCCTCCTCCTCC
TCCTCCCCCTCCTCCCAATTGAATTTATCTCTAGCTTGGCTCCAAAAATA
TGTGCTTTGATTGATTGA
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Synonyms
Publications