jgi.p|Nanoce1779_2|673986, mRNA_9471 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673986
Unique Name	mRNA_9471
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2456
Alignment location	scaffold_34:66359..69033 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674072
Track	FilteredModels2
ProteinId	673986

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:66359..69033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673986	gene_9471	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673986	mRNA_9471-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9471	CDS_9471	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:66359..69033+
coding sequence from alignment at scaffold_34:66359..69033+

mRNA sequence

>mRNA_9471 ID=mRNA_9471|Name=jgi.p|Nanoce1779_2|673986|organism=Nannochloropsis oceanica|type=mRNA|length=2456bp
CTGGCGGGCTTGGCATTGACGTTGTCCTTGTTCTTTCTCTGTTGTGTAAA
AGAGTGGGTGCACCGTGGTGAGGAAAAACCATGTAAAAATATCAGAGGAG
GCAAACTTGGAATGCTTCTTCCACCACAGCATCGGTCACGGTATCATCCA
CTCGGCGAAAATCGAACTCCTCTCTGCCATGTCTCAGTCTCGCACTCAAC
CACGACCCCTCCCACCACCACCACCACTCGTCAACACCACGATAACAGGC
GAATCTTTCTCCCGCCCGTGGACTAAGAGAAGGCGGGGCATACGTGTTGC
TGGGTGGCAGTTTGGGACCTCTCCCTCCATCCTCAGCAACGCAGGCGCAG
GGGAGGTTCTCGGCCAGAGCAAGCAAGCAGGCCTTCAATCAATTCAATCA
GTTCAAATAAAACAATCAGGTCAACACCGCAAGCATGCAAGCTCATCTAC
TGGCCACCGCCACGGGAGGAGGCAGCGTTTGGTGCAGCCCTCACCGCCAG
CACCGTAGACGGCGGCCGCAGGGCACGCAGGCGTTTGTCGCCCCGCAGCT
AAACATCGCGTGCCTCTTCCCCCGAGGACCCAATGGAAAACCCTACACCT
CCTCCTCTCCCTTCCTCTCCAAATGTACCTCCGCCCCCCCCCCCCTCGTT
ATCCCTGCTCGTATCTCTTCTCTCTCCGCAGCTCCTGCATAACGAATCCC
GAAGCGAAAGGACAATCAAACCTAACAGAGGTAACAGCAGCAGCAGCAGC
AGGGTCAAGAGTACCGAGATACTCGCCCTTTCTGTTCCGCCTCCTTCCCA
GACCCCCAACCTTCCCCCACCCCACAAACCATCCTCCACCGTCACGGCCG
AGCGGAGGGCCCAGTCAATCATGAAGCAGCTCGAGCAGTCTCTGGGAGTT
AAACGGAGGTATTTGTCCGACATGAGGCCTCCATTCCAACACTTCTACAT
GCGGGATTTAATCACTTGCATCCTTAGGGCAGTGCTACAGGCGGCGTTAG
TCCCCGTTCAACGGATTTTGGACGATATTCTAGAACAAATCCAGGAGGAG
GACGATGAGGACTGGATGGAGGATGAGGAGGAGTACGACGAAGGGAAGGG
CTTAATCCAAGTGGACTTACCGGATTGGAAGTTGTATTTTCAAAACTTCA
AATGGCGGGTGCTGGTGAACGTGGCAAGAAGTCTGGGGACCAAGACAATC
CATTATAGCGTGCTGGACCCATTGGCGCTGCTGTGCTTGAGGCCCCGGAC
GGTGGACAGGCTTACCAAGGATCCCATTCTCTCGGCCCGTCGAAAGGACA
CTCGCCTGGGGCGTCTTAATGCCTCCCATGCTATGCTCAAGACCGTGCTT
TACGCAAACCTTACGTCCTCCCTCTCCAATCTCCTGTACGATTGCCTCCT
GCTGGGATATGACTTGCTAATTGAAAGCTACCCGGAGTTTCGATTGGGGC
CTCCCGGGCCGTTGCTTGTCATGCCTAAAAAGAAGGAGAAGAAAGACGAG
AAGAAGATGATGAAGATGAAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGA
GGAGGGAACAGATGGAGGGGGGAAGAGTTGGAGGGAGGGAAAGAGGACGA
AGGGGATGGAGGGCTGGGGGGAGAAGATCGTGATTCGAGAGGAGCGGGTG
CTGTTTGATGTGGACAAGGAGGACGAGGAGAAGACGGAGGACGAAGAAGG
AGGGAAGGAGGGAGGGGAGGGGAGCGGGAGTAGCAGTGGGAGTGGGAGCG
AGGGAGGCTTTTTGAAAGTGCCCAACGGGATGATGGATGTAGTGAGCGTC
CCTGCATCCCCTGTGTTGCTGTCACCAAGGGAGGAAGGGGGAAACGAAGG
GGCAGTAGAAGAGAGGAGGGGGTTGATGGATATGGAGGGTCTGCAGACTC
CCCCTGTGGTGTTGTCGCCAAGGGAGGGCGGGGGGTGCGGGGAAGGGGGA
GGGGGGGATGGAGGGGAGGAGGGGGAGGAACAAATAAGTGGAAGTGGGGA
GAGAGGGGGGGAGGGAGAGGGGAGGGAAGGGGATGAAGAAGATAGGAGTA
TGATGATCTCGCCGAGGGGATCTTCAGTGGCGGACGAGAGAGAAGAGGGA
GAGGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGA
GGAGACAGAGACGGCACGGCACGAACGTCGTCGGCGAGAGGTCGCGGCTC
GACTCCGCAACATCTTTCTAGTGAATGGCACGGCCTACGTGAGTAGCCTT
GTGCTGATGCCCCTTGGTACATTTCTCCTACCCGGATGGGGAACAACAGT
GGGCATGATACTGGCAGACTGCGTGCCGCTGGTGGTGGGGCTGTGAACAC
ATGCGGGCCCAGCCCATCGCCGTCTCCCCCATTAGAGAGTGATGACGGGG
AGATGGACGGAGAGGAGGGCGAGAGGGATGGCGGGCGGGAAGGAGACATA
GGTGGG

protein sequence of jgi.p|Nanoce1779_2|673986

>mRNA_9471-protein ID=mRNA_9471-protein|Name=jgi.p|Nanoce1779_2|673986|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MENPTPPPLPSSPNVPPPPPPSLSLLVSLLSPQLLHNESRSERTIKPNRG
NSSSSSRVKSTEILALSVPPPSQTPNLPPPHKPSSTVTAERRAQSIMKQL
EQSLGVKRRYLSDMRPPFQHFYMRDLITCILRAVLQAALVPVQRILDDIL
EQIQEEDDEDWMEDEEEYDEGKGLIQVDLPDWKLYFQNFKWRVLVNVARS
LGTKTIHYSVLDPLALLCLRPRTVDRLTKDPILSARRKDTRLGRLNASHA
MLKTVLYANLTSSLSNLLYDCLLLGYDLLIESYPEFRLGPPGPLLVMPKK
KEKKDEKKMMKMKEEEEEEEEEEEGTDGGGKSWREGKRTKGMEGWGEKIV
IREERVLFDVDKEDEEKTEDEEGGKEGGEGSGSSSGSGSEGGFLKVPNGM
MDVVSVPASPVLLSPREEGGNEGAVEERRGLMDMEGLQTPPVVLSPREGG
GCGEGGGGDGGEEGEEQISGSGERGGEGEGREGDEEDRSMMISPRGSSVA
DEREEGEETEEEEEEEEEVEEEEETETARHERRRREVAARLRNIFLVNGT
AYVSSLVLMPLGTFLLPGWGTTVGMILADCVPLVVGL*

mRNA from alignment at scaffold_34:66359..69033+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9471 ID=mRNA_9471|Name=jgi.p|Nanoce1779_2|673986|organism=Nannochloropsis oceanica|type=mRNA|length=2675bp|location=Sequence derived from alignment at scaffold_34:66359..69033+ (Nannochloropsis oceanica)
CTGGCGGGCTTGGCATTGACGTTGTCCTTGTTCTTTCTCTGTTGTGTAAA
AGAGTGGGTGCACCGTGGTGAGGAAAAACCATGTAAAAATATCAGAGGAG
GCAAACTTGGAATGCTTCTTCCACCACAGCATCGGTCACGGTATCATCCA
CTCGGCGAAAATCGAACTCCTCTCTGCCATGTCTCAGTCTCGCACTCAAC
CACGACCCCTCCCACCACCACCACCACTCGTCAACACCACGATAACAGGC
GAATCTTTCTCCCGCCCGTGGACTAAGAGAAGGCGGGGCATACGTGTTGC
TGGGTGGCAGTTTGGGACCTCTCCCTCCATCCTCAGCAACGCAGGCGCAG
GGGAGGTTCTCGGCCAGAGCAAGCAAGCAGGCCTTCAATCAATTCAATCA
GTTCAAATAAAACAATCAGGTCAACACCGCAAGCATGCAAGCTCATCTAC
TGGCCACCGCCACGGGAGGAGGCAGCGTTTGGTGCAGCCCTCACCGCCAG
CACCGTAGACGGCGGCCGCAGGGCACGCAGGCGTTTGTCGCCCCGCAGCT
AAACATCGCGTGCCTCTTCCCCCGAGGACCCAATGGAAAACCCTACACCT
CCTCCTCTCCCTTCCTCTCCAAATGTACCTCCGCCCCCCCCCCCCTCGTT
ATCCCTGCTCGTATCTCTTCTCTCTCCGCAGCTCCTGCATAACGAATCCC
GAAGCGAAAGGACAATCAAACCTAACAGAGGTAACAGCAGCAGCAGCAGC
AGGGTCAAGAGTACCGAGATACTCGCCCTTTCTGTTCCGCCTCCTTCCCA
GACCCCCAACCTTCCCCCACCCCACAAACCATCCTCCACCGTCACGGCCG
AGCGGAGGGCCCAGTCAATCATGAAGCAGCTCGAGCAGTCTCTGGGAGTT
AAACGGAGGTATTTGTCCGACATGAGGCCTCCATTCCAACACTTCTACAT
GCGGGATTTAATCACTTGCATCCTTAGGGCAGTGCTACAGGCGGCGTTAG
TCCCCGTTCAACGGATTTTGGACGATATTCTAGAACAAATCCAGGAGGAG
GACGATGAGGACTGGATGGAGGATGAGGAGGAGTACGACGAAGGGAAGGG
CTTAATCCAAGTGGACTTACCGGATTGGAAGTTGTATTTTCAAAACTTCA
AATGGCGGGTGCTGGTGAACGTGGCAAGAAGTCTGGGGACCAAGACAATC
CATTATAGCGTGCTGGACCCATTGGCGCTGCTGTGCTTGAGGCCCCGGAC
GGTGGACAGGCTTACCAAGGTCGGAGAGGAGGAAGGGAGGGAGGGAGGGC
GGGAGGGAAAGGTGAATCATCATATCATCTACTGAGTCTCTATGTATCAT
CTATGTCTCTATATCCCTTGTTCATAATTCTCTATCCTTTCTGTCCATAC
ATCAACCTCACCTTCTCTTCCTTCCCTGATCCTCCTTCCCGGCCTCCTCG
TCCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCAGGATCCCATTCTC
TCGGCCCGTCGAAAGGACACTCGCCTGGGGCGTCTTAATGCCTCCCATGC
TATGCTCAAGACCGTGCTTTACGCAAACCTTACGTCCTCCCTCTCCAATC
TCCTGTACGATTGCCTCCTGCTGGGATATGACTTGCTAATTGAAAGCTAC
CCGGAGTTTCGATTGGGGCCTCCCGGGCCGTTGCTTGTCATGCCTAAAAA
GAAGGAGAAGAAAGACGAGAAGAAGATGATGAAGATGAAGGAGGAGGAGG
AGGAGGAAGAGGAGGAGGAGGAGGGAACAGATGGAGGGGGGAAGAGTTGG
AGGGAGGGAAAGAGGACGAAGGGGATGGAGGGCTGGGGGGAGAAGATCGT
GATTCGAGAGGAGCGGGTGCTGTTTGATGTGGACAAGGAGGACGAGGAGA
AGACGGAGGACGAAGAAGGAGGGAAGGAGGGAGGGGAGGGGAGCGGGAGT
AGCAGTGGGAGTGGGAGCGAGGGAGGCTTTTTGAAAGTGCCCAACGGGAT
GATGGATGTAGTGAGCGTCCCTGCATCCCCTGTGTTGCTGTCACCAAGGG
AGGAAGGGGGAAACGAAGGGGCAGTAGAAGAGAGGAGGGGGTTGATGGAT
ATGGAGGGTCTGCAGACTCCCCCTGTGGTGTTGTCGCCAAGGGAGGGCGG
GGGGTGCGGGGAAGGGGGAGGGGGGGATGGAGGGGAGGAGGGGGAGGAAC
AAATAAGTGGAAGTGGGGAGAGAGGGGGGGAGGGAGAGGGGAGGGAAGGG
GATGAAGAAGATAGGAGTATGATGATCTCGCCGAGGGGATCTTCAGTGGC
GGACGAGAGAGAAGAGGGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGACAGAGACGGCACGGCACGAACGTCGT
CGGCGAGAGGTCGCGGCTCGACTCCGCAACATCTTTCTAGTGAATGGCAC
GGCCTACGTGAGTAGCCTTGTGCTGATGCCCCTTGGTACATTTCTCCTAC
CCGGATGGGGAACAACAGTGGGCATGATACTGGCAGACTGCGTGCCGCTG
GTGGTGGGGCTGTGAACACATGCGGGCCCAGCCCATCGCCGTCTCCCCCA
TTAGAGAGTGATGACGGGGAGATGGACGGAGAGGAGGGCGAGAGGGATGG
CGGGCGGGAAGGAGACATAGGTGGG

Coding sequence (CDS) from alignment at scaffold_34:66359..69033+

>mRNA_9471 ID=mRNA_9471|Name=jgi.p|Nanoce1779_2|673986|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_34:66359..69033+ (Nannochloropsis oceanica)
ATGGAAAACCCTACACCTCCTCCTCTCCCTTCCTCTCCAAATGTACCTCC
GCCCCCCCCCCCCTCGTTATCCCTGCTCGTATCTCTTCTCTCTCCGCAGC
TCCTGCATAACGAATCCCGAAGCGAAAGGACAATCAAACCTAACAGAGGT
AACAGCAGCAGCAGCAGCAGGGTCAAGAGTACCGAGATACTCGCCCTTTC
TGTTCCGCCTCCTTCCCAGACCCCCAACCTTCCCCCACCCCACAAACCAT
CCTCCACCGTCACGGCCGAGCGGAGGGCCCAGTCAATCATGAAGCAGCTC
GAGCAGTCTCTGGGAGTTAAACGGAGGTATTTGTCCGACATGAGGCCTCC
ATTCCAACACTTCTACATGCGGGATTTAATCACTTGCATCCTTAGGGCAG
TGCTACAGGCGGCGTTAGTCCCCGTTCAACGGATTTTGGACGATATTCTA
GAACAAATCCAGGAGGAGGACGATGAGGACTGGATGGAGGATGAGGAGGA
GTACGACGAAGGGAAGGGCTTAATCCAAGTGGACTTACCGGATTGGAAGT
TGTATTTTCAAAACTTCAAATGGCGGGTGCTGGTGAACGTGGCAAGAAGT
CTGGGGACCAAGACAATCCATTATAGCGTGCTGGACCCATTGGCGCTGCT
GTGCTTGAGGCCCCGGACGGTGGACAGGCTTACCAAGGATCCCATTCTCT
CGGCCCGTCGAAAGGACACTCGCCTGGGGCGTCTTAATGCCTCCCATGCT
ATGCTCAAGACCGTGCTTTACGCAAACCTTACGTCCTCCCTCTCCAATCT
CCTGTACGATTGCCTCCTGCTGGGATATGACTTGCTAATTGAAAGCTACC
CGGAGTTTCGATTGGGGCCTCCCGGGCCGTTGCTTGTCATGCCTAAAAAG
AAGGAGAAGAAAGACGAGAAGAAGATGATGAAGATGAAGGAGGAGGAGGA
GGAGGAAGAGGAGGAGGAGGAGGGAACAGATGGAGGGGGGAAGAGTTGGA
GGGAGGGAAAGAGGACGAAGGGGATGGAGGGCTGGGGGGAGAAGATCGTG
ATTCGAGAGGAGCGGGTGCTGTTTGATGTGGACAAGGAGGACGAGGAGAA
GACGGAGGACGAAGAAGGAGGGAAGGAGGGAGGGGAGGGGAGCGGGAGTA
GCAGTGGGAGTGGGAGCGAGGGAGGCTTTTTGAAAGTGCCCAACGGGATG
ATGGATGTAGTGAGCGTCCCTGCATCCCCTGTGTTGCTGTCACCAAGGGA
GGAAGGGGGAAACGAAGGGGCAGTAGAAGAGAGGAGGGGGTTGATGGATA
TGGAGGGTCTGCAGACTCCCCCTGTGGTGTTGTCGCCAAGGGAGGGCGGG
GGGTGCGGGGAAGGGGGAGGGGGGGATGGAGGGGAGGAGGGGGAGGAACA
AATAAGTGGAAGTGGGGAGAGAGGGGGGGAGGGAGAGGGGAGGGAAGGGG
ATGAAGAAGATAGGAGTATGATGATCTCGCCGAGGGGATCTTCAGTGGCG
GACGAGAGAGAAGAGGGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGTGGAGGAGGAGGAGGAGACAGAGACGGCACGGCACGAACGTCGTC
GGCGAGAGGTCGCGGCTCGACTCCGCAACATCTTTCTAGTGAATGGCACG
GCCTACGTGAGTAGCCTTGTGCTGATGCCCCTTGGTACATTTCTCCTACC
CGGATGGGGAACAACAGTGGGCATGATACTGGCAGACTGCGTGCCGCTGG
TGGTGGGGCTGTGAATGGAAAACCCTACACCTCCTCCTCTCCCTTCCTCT
CCAAATGTACCTCCGCCCCCCCCCCCCTCGTTATCCCTGCTCGTATCTCT
TCTCTCTCCGCAGCTCCTGCATAACGAATCCCGAAGCGAAAGGACAATCA
AACCTAACAGAGGTAACAGCAGCAGCAGCAGCAGGGTCAAGAGTACCGAG
ATACTCGCCCTTTCTGTTCCGCCTCCTTCCCAGACCCCCAACCTTCCCCC
ACCCCACAAACCATCCTCCACCGTCACGGCCGAGCGGAGGGCCCAGTCAA
TCATGAAGCAGCTCGAGCAGTCTCTGGGAGTTAAACGGAGGTATTTGTCC
GACATGAGGCCTCCATTCCAACACTTCTACATGCGGGATTTAATCACTTG
CATCCTTAGGGCAGTGCTACAGGCGGCGTTAGTCCCCGTTCAACGGATTT
TGGACGATATTCTAGAACAAATCCAGGAGGAGGACGATGAGGACTGGATG
GAGGATGAGGAGGAGTACGACGAAGGGAAGGGCTTAATCCAAGTGGACTT
ACCGGATTGGAAGTTGTATTTTCAAAACTTCAAATGGCGGGTGCTGGTGA
ACGTGGCAAGAAGTCTGGGGACCAAGACAATCCATTATAGCGTGCTGGAC
CCATTGGCGCTGCTGTGCTTGAGGCCCCGGACGGTGGACAGGCTTACCAA
GGATCCCATTCTCTCGGCCCGTCGAAAGGACACTCGCCTGGGGCGTCTTA
ATGCCTCCCATGCTATGCTCAAGACCGTGCTTTACGCAAACCTTACGTCC
TCCCTCTCCAATCTCCTGTACGATTGCCTCCTGCTGGGATATGACTTGCT
AATTGAAAGCTACCCGGAGTTTCGATTGGGGCCTCCCGGGCCGTTGCTTG
TCATGCCTAAAAAGAAGGAGAAGAAAGACGAGAAGAAGATGATGAAGATG
AAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGGAACAGATGGAGG
GGGGAAGAGTTGGAGGGAGGGAAAGAGGACGAAGGGGATGGAGGGCTGGG
GGGAGAAGATCGTGATTCGAGAGGAGCGGGTGCTGTTTGATGTGGACAAG
GAGGACGAGGAGAAGACGGAGGACGAAGAAGGAGGGAAGGAGGGAGGGGA
GGGGAGCGGGAGTAGCAGTGGGAGTGGGAGCGAGGGAGGCTTTTTGAAAG
TGCCCAACGGGATGATGGATGTAGTGAGCGTCCCTGCATCCCCTGTGTTG
CTGTCACCAAGGGAGGAAGGGGGAAACGAAGGGGCAGTAGAAGAGAGGAG
GGGGTTGATGGATATGGAGGGTCTGCAGACTCCCCCTGTGGTGTTGTCGC
CAAGGGAGGGCGGGGGGTGCGGGGAAGGGGGAGGGGGGGATGGAGGGGAG
GAGGGGGAGGAACAAATAAGTGGAAGTGGGGAGAGAGGGGGGGAGGGAGA
GGGGAGGGAAGGGGATGAAGAAGATAGGAGTATGATGATCTCGCCGAGGG
GATCTTCAGTGGCGGACGAGAGAGAAGAGGGAGAGGAGACGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGACAGAGACGGCACG
GCACGAACGTCGTCGGCGAGAGGTCGCGGCTCGACTCCGCAACATCTTTC
TAGTGAATGGCACGGCCTACGTGAGTAGCCTTGTGCTGATGCCCCTTGGT
ACATTTCTCCTACCCGGATGGGGAACAACAGTGGGCATGATACTGGCAGA
CTGCGTGCCGCTGGTGGTGGGGCTGTGA

Synonyms

Publications