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Properties
| Property Name | Value |
|---|
| TranscriptId | 574858 |
| Track | FilteredModels2 |
| ProteinId | 574772 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:824864..828602 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_947 ID=mRNA_947|Name=jgi.p|Nanoce1779_2|574772|organism=Nannochloropsis oceanica|type=mRNA|length=3622bp
GGAACCATCGCCGCGTGGGGAAGGAGAGCTTTGTATACATGTGCGCTTCC
TGTCGTGGGGTTGGTTGGAAATGAGCGCGGGGTGTGATTATCATAGCTGT
GGTAGAGGCAGGGAGGTCAACGTGACGCGAGTCCACCCCGCTTGAGCTTT
TGGGTTGCGGTCACGCTTTTTCTTCGCTTTCCTCAGCACGAATAATAGCT
CGAGAGAAGCAAGCTCCACCTGAAAACCTCCCCGCTACCAATGCCTGAGC
CTCGACTACAACCACATCGCAAACGGGCCCGCGTCGGTCTCCCCGACATT
CGATACATCGATCTGCTGTGGTGCTCTCTCGCTGGCTTGCGATGCCTGCG
CGTTGTACCTGTGTTTGTTGCTGCCGTCGACGGCCCTGACGACCGTGATA
CCTCAAATCTACTTTATTGGCTGCCCGACCCCTGCCCGACGGCCTCCTTG
TGCCGGGTAGCGCTGACGCTTCCCTGTCATGCAGACATTCCAAGCCGGGG
CAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCTGAATGTGAAAGATCCTC
AAATGGATCTCTGCTCTCTCCCATGGCGACCCCACCACTACATGGCACCG
GTGGAAATGCTTGATCCCATTTCCGCGATGCCTTGGTCTCTTTGTCCCCG
AAGCTGCCTTGCACGCATTGTCAAGAAAGCAGAGCTTGAGCATGGTCTGA
CATTTCGTGTGGGATTTGAGTTGGAGTTCGTGCTGGGTTCGGCAGATTGT
CAAATCACTGAAATGCGCACCTACTCCTCAGCTGGGGCGTTCGACGACGC
GGCCCCTATTCTTGACGAGCTGTGCAAAACTCTGAGTGAGCTGGGCCTCA
TCGTGGAACAAATGCACAAAGAAAGCGGACCAGGCCAATTTGAAATTGTC
CTTGGTCACAGACCAGTGATGACAGCAGTCGATGGACTGCTGTTCGCTCG
GGAGGCCATCGTTGCCGTGGCACAGCGGCACCAGCGGCGCGTCAACTTCT
TGCCTAAGTACATGGGTGAACACGCGGGCAACGGTTGCCACGTGCACATT
AGCCTATGGCGGAATGGGATGAATTTACTGCCACCACCCGGTCTTACTGA
AACCACACCCTCTCTAACCAATTTGGACGACGTGCTCAAGACGTATTGTA
GTGCTGAGGGAATGTTGTTGCTCGATGAGACGCTTCGTCAATTTCTTGGT
GGCCTTCATGCCTTGCTGCCCGCGCTTATGTGCTTTACGACTCCCACACC
CAACTCATTCCGTCGCATCCAGCCACGAGCGTGGGCAGGCGCCTTTCAAG
GATGGGGGATTGGCAACAAGGAAGTACCACTTCGTCTACCTATTCAATCG
TTGGATGAAGGGGTATTTACAAACCTTGAGGTCAAGCTGTGCGATGCCAC
GGCCAATCCTTACATTGCTGTCGCCGCGCTAATAAGTGCTGGTCTGGTAG
GCTTGGAATTGGCGGCAATGACCTCAAAGGACGATGAGCCAATCCAAAAC
CCTATGCTCCTACCTCCGCCGCTTGAAGTAGATGCAGGAGAGCTTTCGCT
TTTTGAACAGACACGACGTGGTATTCGAAAATTGCCCAAGAACTGGGCAG
AGGCCAAGGCGCACCTAATGAGCCCGGAGGCAACGCGTTTGAGGGAATTG
CTGGGAACGGACATGGTGCAAGCTTGTGTAGCCACCAGGGAAAGCGAATG
GGCGGCGTTGAAGGGAATGACGCTTGACAAGGAAGTTTCATTGCTATACG
ACAAGTATTGAGTCCCATTGATTGTAAAAAAAATGAATTGAAATGGAAAT
GAAACAAAAATGTCTTTTCAGCATCAACTCCAGCCAACCTCCCCACCAGG
CATCTGACTGCTTTTGGAGACAACACTCTCGTCACTACACTACTCACACG
CAACGGTCACGCATGCACATAGTCCCTTCCTGACACGCACGATCACAGGA
GATCCGTATGTTGGTGGGCGAAGGACCCAGAAACCTTTGTTCGCCCTTGA
TCTCCTTGGGCCTCCCACTTCTACTCTCACTCTTCCTCAACGCCACCACG
CACGCTTTTGTGAGAATATCGCCCATGCCCATCCGCAAGCTTTTCACCTC
GTCCACACCGCCCGCCTCGTCTCCCACATCATCGTCGACCGGTAGCGGCA
GCTCTTCTTATGGCAGCGCCCGCAATAGTTTGCCGGGGCACTTCCGCTTC
CCCAGCACGCGTCAGAGCAAGGGCAGCAGCTCTCAAGTCACATCGGTGGA
GGACGACAGTGACCAAGCGTCCGTTTCCTCTTCCATGGTGGGCTTCCACG
GTTGCTCGTCGATCGGTACTCGTGACGATGACGACGATGACGGCGGCGAA
GCCCTTAACGGTGACCAAGGGGAGCACCAACGCCGGTCCTCCCTACCCAA
CACGCAAGAGGTTTTGGCCTCTTTCCTCGCTCGCGACTTCCAACCTTCGC
CATGGCTTACGAATGAACACTGGCAAACCATTTGGGGTGCTCGAGCTATT
CAAGACATTGTAATGAAAAAGCTGGCGCCCAACACCTTGCCGCAAGGATG
GAAGGATGTGTATGATCGACGCGAGCGGTGGGAGACGCCCGATGGGGACT
TTTTCCACGTGGATTTCTTATTCTGTGACGGCCATCCTGCCGCCACTTCC
TCATCACCACGGCCACTAGCGATTGTCTTGCATGGTCTAGAGTCCACCTC
ATGGGCGCTGCTGCCGCGTTCCATGGCCAAGGCTTACGTTCAACGAGGCT
TCGACGTCCTCGCCCTGAACTTCCGCGGCTGTTGTGGAGTTGATAACCTC
AAGCCCTACTCCTACCACCTGGGGTTCACGGACGATTTGACTTACGTACT
CCGCCGCCTGCACGCCGAGGACCCCTGCCGTCGTGTGTATTTGACTGGCT
TCTCGCTTGGCGGGAATGTTATTCTTAAGTGTTTGGGAGAGCTGGGGGAG
GATGCGGTCAGCCTAGGCGTGGAAGGGGCGGCGGTGGCCTGCGTGCCCTT
CGATGCCGTGCGCTCCTCCAGTAAGATCGACACGGGTTTCAATCGATGGG
TGTATGCGGACAACTTTTTGAAAACGCTCAAAGTGAAGGCGGCGCAGAAA
TGGAAGAAGCACAGGGAGTCCTTGGACGGGGAGGAGCTGGGGGAGGGCCC
TTACGACCTGGAGCGAGTGCTGGCTTGTTCTCGCATCGGGGATTTTGACG
ACGAGGTAATTGCCAAGCTGCACAATTTTGATGGTAAAGTGGACTACTAC
ACGCAGAGCTGCTCTAAGCAATACCTGCCTCGCATCCGGATTCCAGCTCT
AGTGATAAACGCGCGCGATGACCCTTTCATCAACGAGAATGGCTTACCAG
CGCCGGATGAGGTTGGAGAGGGTACAGTTCGCCTGGTATATCATAAGCAT
GGTGGGCATTGTGGATTTTTAACAGGGCAGGAGGAGAAAGGGCATCGAGA
GGAGGAACGGTGGCTTCCCACTGAATTGGCGCGTTTTTTGATGCACGTTG
ACGTGCCGTTTCGTGCACTGGAGAGAAATGACGACTGTAGTGATGTTGGG
GAGAATTGGGCAGGCGAGAGCCAGTCTGTGTTTGCGGTGAAATGAAAAAG
AAGTGTAGATGTATACTAGAAT back to topprotein sequence of jgi.p|Nanoce1779_2|574772 >mRNA_947-protein ID=mRNA_947-protein|Name=jgi.p|Nanoce1779_2|574772|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MPEPRLQPHRKRARVGLPDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPD
DRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNV
KDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELE
HGLTFRVGFELEFVLGSADCQITEMRTYSSAGAFDDAAPILDELCKTLSE
LGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRR
VNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLK
TYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAG
AFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISA
GLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPK
NWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVS
LLYDKY* back to topmRNA from alignment at scaffold_2:824864..828602+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_947 ID=mRNA_947|Name=jgi.p|Nanoce1779_2|574772|organism=Nannochloropsis oceanica|type=mRNA|length=3739bp|location=Sequence derived from alignment at scaffold_2:824864..828602+ (Nannochloropsis oceanica)
GGAACCATCGCCGCGTGGGGAAGGAGAGCTTTGTATACATGTGCGCTTCC
TGTCGTGGGGTTGGTTGGAAATGAGCGCGGGGTGTGATTATCATAGCTGT
GGTAGAGGCAGGGAGGTCAACGTGACGCGAGTCCACCCCGCTTGAGCTTT
TGGGTTGCGGTCACGCTTTTTCTTCGCTTTCCTCAGGTGGGTATGACGAC
TATTAGTCGTGCATGGTCGCATGACAGGACGATTGACGACTATCCCGTAA
TATTGATAGTGCACTCACCTACTATACAACCAAACACTCACCCAAAACAC
AAGCACGAATAATAGCTCGAGAGAAGCAAGCTCCACCTGAAAACCTCCCC
GCTACCAATGCCTGAGCCTCGACTACAACCACATCGCAAACGGGCCCGCG
TCGGTCTCCCCGACATTCGATACATCGATCTGCTGTGGTGCTCTCTCGCT
GGCTTGCGATGCCTGCGCGTTGTACCTGTGTTTGTTGCTGCCGTCGACGG
CCCTGACGACCGTGATACCTCAAATCTACTTTATTGGCTGCCCGACCCCT
GCCCGACGGCCTCCTTGTGCCGGGTAGCGCTGACGCTTCCCTGTCATGCA
GACATTCCAAGCCGGGGCAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCT
GAATGTGAAAGATCCTCAAATGGATCTCTGCTCTCTCCCATGGCGACCCC
ACCACTACATGGCACCGGTGGAAATGCTTGATCCCATTTCCGCGATGCCT
TGGTCTCTTTGTCCCCGAAGCTGCCTTGCACGCATTGTCAAGAAAGCAGA
GCTTGAGCATGGTCTGACATTTCGTGTGGGATTTGAGTTGGAGTTCGTGC
TGGGTTCGGCAGATTGTCAAATCACTGAAATGCGCACCTACTCCTCAGCT
GGGGCGTTCGACGACGCGGCCCCTATTCTTGACGAGCTGTGCAAAACTCT
GAGTGAGCTGGGCCTCATCGTGGAACAAATGCACAAAGAAAGCGGACCAG
GCCAATTTGAAATTGTCCTTGGTCACAGACCAGTGATGACAGCAGTCGAT
GGACTGCTGTTCGCTCGGGAGGCCATCGTTGCCGTGGCACAGCGGCACCA
GCGGCGCGTCAACTTCTTGCCTAAGTACATGGGTGAACACGCGGGCAACG
GTTGCCACGTGCACATTAGCCTATGGCGGAATGGGATGAATTTACTGCCA
CCACCCGGTCTTACTGAAACCACACCCTCTCTAACCAATTTGGACGACGT
GCTCAAGACGTATTGTAGTGCTGAGGGAATGTTGTTGCTCGATGAGACGC
TTCGTCAATTTCTTGGTGGCCTTCATGCCTTGCTGCCCGCGCTTATGTGC
TTTACGACTCCCACACCCAACTCATTCCGTCGCATCCAGCCACGAGCGTG
GGCAGGCGCCTTTCAAGGATGGGGGATTGGCAACAAGGAAGTACCACTTC
GTCTACCTATTCAATCGTTGGATGAAGGGGTATTTACAAACCTTGAGGTC
AAGCTGTGCGATGCCACGGCCAATCCTTACATTGCTGTCGCCGCGCTAAT
AAGTGCTGGTCTGGTAGGCTTGGAATTGGCGGCAATGACCTCAAAGGACG
ATGAGCCAATCCAAAACCCTATGCTCCTACCTCCGCCGCTTGAAGTAGAT
GCAGGAGAGCTTTCGCTTTTTGAACAGACACGACGTGGTATTCGAAAATT
GCCCAAGAACTGGGCAGAGGCCAAGGCGCACCTAATGAGCCCGGAGGCAA
CGCGTTTGAGGGAATTGCTGGGAACGGACATGGTGCAAGCTTGTGTAGCC
ACCAGGGAAAGCGAATGGGCGGCGTTGAAGGGAATGACGCTTGACAAGGA
AGTTTCATTGCTATACGACAAGTATTGAGTCCCATTGATTGTAAAAAAAA
TGAATTGAAATGGAAATGAAACAAAAATGTCTTTTCAGCATCAACTCCAG
CCAACCTCCCCACCAGGCATCTGACTGCTTTTGGAGACAACACTCTCGTC
ACTACACTACTCACACGCAACGGTCACGCATGCACATAGTCCCTTCCTGA
CACGCACGATCACAGGAGATCCGTATGTTGGTGGGCGAAGGACCCAGAAA
CCTTTGTTCGCCCTTGATCTCCTTGGGCCTCCCACTTCTACTCTCACTCT
TCCTCAACGCCACCACGCACGCTTTTGTGAGAATATCGCCCATGCCCATC
CGCAAGCTTTTCACCTCGTCCACACCGCCCGCCTCGTCTCCCACATCATC
GTCGACCGGTAGCGGCAGCTCTTCTTATGGCAGCGCCCGCAATAGTTTGC
CGGGGCACTTCCGCTTCCCCAGCACGCGTCAGAGCAAGGGCAGCAGCTCT
CAAGTCACATCGGTGGAGGACGACAGTGACCAAGCGTCCGTTTCCTCTTC
CATGGTGGGCTTCCACGGTTGCTCGTCGATCGGTACTCGTGACGATGACG
ACGATGACGGCGGCGAAGCCCTTAACGGTGACCAAGGGGAGCACCAACGC
CGGTCCTCCCTACCCAACACGCAAGAGGTTTTGGCCTCTTTCCTCGCTCG
CGACTTCCAACCTTCGCCATGGCTTACGAATGAACACTGGCAAACCATTT
GGGGTGCTCGAGCTATTCAAGACATTGTAATGAAAAAGCTGGCGCCCAAC
ACCTTGCCGCAAGGATGGAAGGATGTGTATGATCGACGCGAGCGGTGGGA
GACGCCCGATGGGGACTTTTTCCACGTGGATTTCTTATTCTGTGACGGCC
ATCCTGCCGCCACTTCCTCATCACCACGGCCACTAGCGATTGTCTTGCAT
GGTCTAGAGTCCACCTCATGGGCGCTGCTGCCGCGTTCCATGGCCAAGGC
TTACGTTCAACGAGGCTTCGACGTCCTCGCCCTGAACTTCCGCGGCTGTT
GTGGAGTTGATAACCTCAAGCCCTACTCCTACCACCTGGGGTTCACGGAC
GATTTGACTTACGTACTCCGCCGCCTGCACGCCGAGGACCCCTGCCGTCG
TGTGTATTTGACTGGCTTCTCGCTTGGCGGGAATGTTATTCTTAAGTGTT
TGGGAGAGCTGGGGGAGGATGCGGTCAGCCTAGGCGTGGAAGGGGCGGCG
GTGGCCTGCGTGCCCTTCGATGCCGTGCGCTCCTCCAGTAAGATCGACAC
GGGTTTCAATCGATGGGTGTATGCGGACAACTTTTTGAAAACGCTCAAAG
TGAAGGCGGCGCAGAAATGGAAGAAGCACAGGGAGTCCTTGGACGGGGAG
GAGCTGGGGGAGGGCCCTTACGACCTGGAGCGAGTGCTGGCTTGTTCTCG
CATCGGGGATTTTGACGACGAGGTAATTGCCAAGCTGCACAATTTTGATG
GTAAAGTGGACTACTACACGCAGAGCTGCTCTAAGCAATACCTGCCTCGC
ATCCGGATTCCAGCTCTAGTGATAAACGCGCGCGATGACCCTTTCATCAA
CGAGAATGGCTTACCAGCGCCGGATGAGGTTGGAGAGGGTACAGTTCGCC
TGGTATATCATAAGCATGGTGGGCATTGTGGATTTTTAACAGGGCAGGAG
GAGAAAGGGCATCGAGAGGAGGAACGGTGGCTTCCCACTGAATTGGCGCG
TTTTTTGATGCACGTTGACGTGCCGTTTCGTGCACTGGAGAGAAATGACG
ACTGTAGTGATGTTGGGGAGAATTGGGCAGGCGAGAGCCAGTCTGTGTTT
GCGGTGAAATGAAAAAGAAGTGTAGATGTATACTAGAAT back to topCoding sequence (CDS) from alignment at scaffold_2:824864..828602+ >mRNA_947 ID=mRNA_947|Name=jgi.p|Nanoce1779_2|574772|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_2:824864..828602+ (Nannochloropsis oceanica)
ATGCCTGAGCCTCGACTACAACCACATCGCAAACGGGCCCGCGTCGGTCT
CCCCGACATTCGATACATCGATCTGCTGTGGTGCTCTCTCGCTGGCTTGC
GATGCCTGCGCGTTGTACCTGTGTTTGTTGCTGCCGTCGACGGCCCTGAC
GACCGTGATACCTCAAATCTACTTTATTGGCTGCCCGACCCCTGCCCGAC
GGCCTCCTTGTGCCGGGTAGCGCTGACGCTTCCCTGTCATGCAGACATTC
CAAGCCGGGGCAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCTGAATGTG
AAAGATCCTCAAATGGATCTCTGCTCTCTCCCATGGCGACCCCACCACTA
CATGGCACCGGTGGAAATGCTTGATCCCATTTCCGCGATGCCTTGGTCTC
TTTGTCCCCGAAGCTGCCTTGCACGCATTGTCAAGAAAGCAGAGCTTGAG
CATGGTCTGACATTTCGTGTGGGATTTGAGTTGGAGTTCGTGCTGGGTTC
GGCAGATTGTCAAATCACTGAAATGCGCACCTACTCCTCAGCTGGGGCGT
TCGACGACGCGGCCCCTATTCTTGACGAGCTGTGCAAAACTCTGAGTGAG
CTGGGCCTCATCGTGGAACAAATGCACAAAGAAAGCGGACCAGGCCAATT
TGAAATTGTCCTTGGTCACAGACCAGTGATGACAGCAGTCGATGGACTGC
TGTTCGCTCGGGAGGCCATCGTTGCCGTGGCACAGCGGCACCAGCGGCGC
GTCAACTTCTTGCCTAAGTACATGGGTGAACACGCGGGCAACGGTTGCCA
CGTGCACATTAGCCTATGGCGGAATGGGATGAATTTACTGCCACCACCCG
GTCTTACTGAAACCACACCCTCTCTAACCAATTTGGACGACGTGCTCAAG
ACGTATTGTAGTGCTGAGGGAATGTTGTTGCTCGATGAGACGCTTCGTCA
ATTTCTTGGTGGCCTTCATGCCTTGCTGCCCGCGCTTATGTGCTTTACGA
CTCCCACACCCAACTCATTCCGTCGCATCCAGCCACGAGCGTGGGCAGGC
GCCTTTCAAGGATGGGGGATTGGCAACAAGGAAGTACCACTTCGTCTACC
TATTCAATCGTTGGATGAAGGGGTATTTACAAACCTTGAGGTCAAGCTGT
GCGATGCCACGGCCAATCCTTACATTGCTGTCGCCGCGCTAATAAGTGCT
GGTCTGGTAGGCTTGGAATTGGCGGCAATGACCTCAAAGGACGATGAGCC
AATCCAAAACCCTATGCTCCTACCTCCGCCGCTTGAAGTAGATGCAGGAG
AGCTTTCGCTTTTTGAACAGACACGACGTGGTATTCGAAAATTGCCCAAG
AACTGGGCAGAGGCCAAGGCGCACCTAATGAGCCCGGAGGCAACGCGTTT
GAGGGAATTGCTGGGAACGGACATGGTGCAAGCTTGTGTAGCCACCAGGG
AAAGCGAATGGGCGGCGTTGAAGGGAATGACGCTTGACAAGGAAGTTTCA
TTGCTATACGACAAGTATTGA back to top
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