jgi.p|Nanoce1779_2|606088, mRNA_9469 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606088
Unique NamemRNA_9469
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length533
Alignment locationscaffold_34:61473..62298 +

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Properties
Property NameValue
TranscriptId606174
TrackFilteredModels2
ProteinId606088
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:61473..62298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606088gene_9469Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606088mRNA_9469-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9469CDS_9469Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9469 ID=mRNA_9469|Name=jgi.p|Nanoce1779_2|606088|organism=Nannochloropsis oceanica|type=mRNA|length=533bp
ACAGCTTACACCAATAAGACCGCATCAAGCAAGTCATGTTCAAGCACTTT
TCGCTGCTGCTCCTCCTCCTCTCCCTCTTCTCCTTGACCTGCTGCGAGGC
CTTCCACGGCGTGCATCCTCTGCCGAACCAGGCCAGGCTTGCCTCCCCGC
GTGCCAAGACCCAAGCCCAGCCTCTTTCCCGGAGCCCCCCGCAACGAGCC
GCCTTGGTGCGTCGGGAGGTCATCGCCATCATCCCCCAGGTCCTTTTCGT
GGCGGCGTGTGCCGGCGCTGTCTTTGGATACGTCGCAACGCACATCGATG
AGATCGTGGCCAAGCAAAAGGTGGCGGTTGAGAAGACGATGACTAAACAA
AACAACGACTTGAAGAGCGCGCAGCAGCAGCAGAAGGATGCCATCGACGC
GGCAATGAAGAAGCAACAGGACGCGATCCGCAAAATTCAAGAGCAACAGA
CCAAACGCTGATCGCCATCATTATGGAGGGGATGAGGTGTTTACATAATG
TATGGGTCTGATTGTGTTCATAGGACGAGGGGG
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protein sequence of jgi.p|Nanoce1779_2|606088

>mRNA_9469-protein ID=mRNA_9469-protein|Name=jgi.p|Nanoce1779_2|606088|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MFKHFSLLLLLLSLFSLTCCEAFHGVHPLPNQARLASPRAKTQAQPLSRS
PPQRAALVRREVIAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVEK
TMTKQNNDLKSAQQQQKDAIDAAMKKQQDAIRKIQEQQTKR*
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mRNA from alignment at scaffold_34:61473..62298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9469 ID=mRNA_9469|Name=jgi.p|Nanoce1779_2|606088|organism=Nannochloropsis oceanica|type=mRNA|length=826bp|location=Sequence derived from alignment at scaffold_34:61473..62298+ (Nannochloropsis oceanica)
ACAGCTTACACCAATAAGACCGCATCAAGCAAGTCATGTTCAAGCACTTT
TCGCTGCTGCTCCTCCTCCTCTCCCTCTTCTCCTTGACCTGCTGCGAGGC
CTTCCACGGCGTGCATCCTCTGCCGAACCAGGCCAGGCTTGCCTCCCCGC
GTGCCAAGACCCAAGCCCAGCCTCTTTCCCGGAGCCCCCCGCAACGAGCC
GCCTTGGTGCGTCGGGAGGTCATCGCCATCATCCCCCAGGTCCTTTTCGT
GGCGGCGTGTGCCGGCGGTAAGTACAGGAGCGAGAGATGGAGGGATTGAC
GAAGCGGATGTGTAATTGAATGAGGAGTACGCCGTGAGGTGAGCAGGGGA
AAAGTGATCGAAGAACAGCTTCTAAGTCCATTTAAATGCCGCAGGGCTGG
TGCGTAGGCGGTGAATGTAGAGGGAAGGAAGGATGTTGATATTTACTTGT
ATGATTGAATGTCTGTCAAGGGAAGGGGAGGGATTATATTGCAGTTCTAG
TTTGTTTCATTTCACACTCACCGCAACTTCCCTTCACTCCTCCCCCTCCC
TCTCACACAGCTGTCTTTGGATACGTCGCAACGCACATCGATGAGATCGT
GGCCAAGCAAAAGGTGGCGGTTGAGAAGACGATGACTAAACAAAACAACG
ACTTGAAGAGCGCGCAGCAGCAGCAGAAGGATGCCATCGACGCGGCAATG
AAGAAGCAACAGGACGCGATCCGCAAAATTCAAGAGCAACAGACCAAACG
CTGATCGCCATCATTATGGAGGGGATGAGGTGTTTACATAATGTATGGGT
CTGATTGTGTTCATAGGACGAGGGGG
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Coding sequence (CDS) from alignment at scaffold_34:61473..62298+

>mRNA_9469 ID=mRNA_9469|Name=jgi.p|Nanoce1779_2|606088|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_34:61473..62298+ (Nannochloropsis oceanica)
ATGTTCAAGCACTTTTCGCTGCTGCTCCTCCTCCTCTCCCTCTTCTCCTT
GACCTGCTGCGAGGCCTTCCACGGCGTGCATCCTCTGCCGAACCAGGCCA
GGCTTGCCTCCCCGCGTGCCAAGACCCAAGCCCAGCCTCTTTCCCGGAGC
CCCCCGCAACGAGCCGCCTTGGTGCGTCGGGAGGTCATCGCCATCATCCC
CCAGGTCCTTTTCGTGGCGGCGTGTGCCGGCGCTGTCTTTGGATACGTCG
CAACGCACATCGATGAGATCGTGGCCAAGCAAAAGGTGGCGGTTGAGAAG
ACGATGACTAAACAAAACAACGACTTGAAGAGCGCGCAGCAGCAGCAGAA
GGATGCCATCGACGCGGCAATGAAGAAGCAACAGGACGCGATCCGCAAAA
TTCAAGAGCAACAGACCAAACGCTGAATGTTCAAGCACTTTTCGCTGCTG
CTCCTCCTCCTCTCCCTCTTCTCCTTGACCTGCTGCGAGGCCTTCCACGG
CGTGCATCCTCTGCCGAACCAGGCCAGGCTTGCCTCCCCGCGTGCCAAGA
CCCAAGCCCAGCCTCTTTCCCGGAGCCCCCCGCAACGAGCCGCCTTGGTG
CGTCGGGAGGTCATCGCCATCATCCCCCAGGTCCTTTTCGTGGCGGCGTG
TGCCGGCGCTGTCTTTGGATACGTCGCAACGCACATCGATGAGATCGTGG
CCAAGCAAAAGGTGGCGGTTGAGAAGACGATGACTAAACAAAACAACGAC
TTGAAGAGCGCGCAGCAGCAGCAGAAGGATGCCATCGACGCGGCAATGAA
GAAGCAACAGGACGCGATCCGCAAAATTCAAGAGCAACAGACCAAACGCT
GA
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Synonyms
Publications