jgi.p|Nanoce1779_2|606084, mRNA_9468 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606084
Unique Name	mRNA_9468
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2332
Alignment location	scaffold_34:58623..61098 -

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Properties


Property Name	Value
TranscriptId	606170
Track	FilteredModels2
ProteinId	606084

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:58623..61098 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606084	gene_9468	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606084	mRNA_9468-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9468	CDS_9468	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:58623..61098-
coding sequence from alignment at scaffold_34:58623..61098-

mRNA sequence

>mRNA_9468 ID=mRNA_9468|Name=jgi.p|Nanoce1779_2|606084|organism=Nannochloropsis oceanica|type=mRNA|length=2332bp
CGCGGCGGGATTCGTGACAGAGCAGCCAAAGCACCACAAGCAGCTATATG
CCTCCTCCAGCAGGGGGCGGAGCGTCCTTGTCCTCCTCCACTTCCTCCAC
CTCGGCCACTCACAGTGCAGCAGCCGCGTCCTCCACCGCCATAGCTGCAG
CCTCCCTGGCATCTTCTCCCCTCCCAGGTGCCACGTCCACACCCTTTCAC
ATCAACGGAAAGATGCCGTCTTCGCCTGCAGTATTGCACAAGCCCGATTC
TTCCTTCAATGTGAGCAGCGCACCCAGCCTGGCCGCCGCCGCAGCACAAC
AAGACCCAACCAGCGGTAATGCTTGTAGGAGCACCTCGTTCACGCTCGGA
ATCATTTGCGCAGGCGTTGCTTGCCTCTTTGCGTCCCAAAATATCATGTC
CCCAAATCTGACCAGTATGGCAGAGGAATTTGATTTTGACAAGGAAGAAC
GCGACCACTTCTTGGGGGCGGAGCTCCCCCTTGCCTACAGCGTCTTTTCG
ATTCCAGGGGCCATGACTCTGGGTCTGCTCGCCGACTGTGGAAGCCGGCA
GCAACTCTTTGTTAGTGTCGTCTTACTAGGTGCCTTTGCCACGCTTTGCA
CTGCATATGTCGAGAGTTACTCCCCCCTCTTTTGGTTACGAGTTGTCAGT
GGAACCGCTACAAATGCCGTCATTCCCATTGCCTTCTCTTTCCTCGGAGA
TCTTTACTCACCGGACAATCGCTCCTTGCCTTCCACCCTCGTCACGGCCG
GGATGGGCGTTGGAATCCTTATCGGCCAAGTGCTAGCAGGTGTGACGGGG
CCTCGCATGGGGTGGCGCGCGCCCTTTGTCATTATCTCTCTGCCAGGACT
AGCGGCGGGAGTCTTGACATATTTGTGTGTCTCAGAGCCCATGCGTGGGC
AGAGTGAGAACGCTGTGGCTGAGATGCTGCGAGGTGGAGGAGGGTGGGAG
GGAGGGCGGATCGCGCGGAAGTTGGACTGGGGGGCCTTTGTGGATATGTT
GCACATTAAGACTAACATTATCTTGATTCTCCAAGCGTTTCCCGGCACAA
TTCCTTGGGGCGTGCTTTTTGCTTATTTGAATGATTTTCTGTCGCAAGAG
AAGGGGCTCCCCGTCGAACAGGCCACGCTGTTGGTCTCTTTGTTTGGAGT
CGGCTCAGCGGTCGGGGGAATCGGAGGGGGGTTGGTGGGACAATACACCT
ACAAGAGGAACAAGCGCCTTTTGCCTGTTGTGATGGCGCTGAGCACTATT
CTGGGTGTGCTGCCCATGTTAGTGCTGATTAACAGTAACTATGCCTCCAC
TTTTTACATCTTTGTGGTCATTATCCCGTGCACTTTCCTCGCGGGGATTC
TGGCCAATATAAATGGCACCAACGTACGCCCATTATTGCTGAATGTCAAT
CTGCCCGAAACCCGAGGCTCGGCAGTATCGGTCGCGAATCTAGTTGCCAA
CTTGGGGAAGGGCCTCGGGCCTAGTATTGCAAATGCTTGGATGGAGCGAT
TGGGTGGAAGTAGGGAGGGTGCGTTTAATGTGATATTTTCGTTGTGGGTG
CTATGTGGGGGGCTGGTGTTCCTGTTAACATTTACTCTGGTTGGGGACGA
GTTGAACGTGCAGGAGGAGATGCGGCGGTCGACGCTCCCAGGGAGGCATC
CACAGCAGCTAAAGCCGATGTCTGGGATGATGAAGGGTCGGAAGGGACAT
GGATACAGTGGAGATGAAGAAGAGATGGGCTTGCTACCGAGCCCTAATGC
GCGAGAAGCCATCGATTTCGACGACGGATATCGTGGTGCTAGCATCAGCA
GCAGCAATAGCCGACATCCTCACCAAAGACATCATTCCCTTCCGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
CCATCATCATCATCATCCTTCAACTCTTCTGACTATCCCAGTTGCTACTA
GCAGCGGCAGCATTGAGGGTCCTTCCTCCAAAGATTCGCCGCTCGTGGGA
AGCGCCGCGCTTCATCACCGGGGATCGCATGCACACTCATATGCCACTGG
AGGAGTTCCGAATGCTGTTTAAATTGTGAGCACTATGCTGGATTTCGACA
ACGGAGAGATTTTAGGGAGGGTAAGAAGGACGAAAGGGAAAGGTGGACTG
TATTTATTTCATAGCGAAACAAAGGCTGAAAAGTTAAACAATTATCAATA
AATTCATATGAAAACAGAGGTGTGAAAGACAAATAACAATACTAGCAGGA
CGATGAAAAATGACAGAACGTGGTTGTCAATCTCCAGGAGAAGAAATGAT
AAATTCTTATGCCTTCATGAAAACTCTAATTG

protein sequence of jgi.p|Nanoce1779_2|606084

>mRNA_9468-protein ID=mRNA_9468-protein|Name=jgi.p|Nanoce1779_2|606084|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp
MPPPAGGGASLSSSTSSTSATHSAAAASSTAIAAASLASSPLPGATSTPF
HINGKMPSSPAVLHKPDSSFNVSSAPSLAAAAAQQDPTSGNACRSTSFTL
GIICAGVACLFASQNIMSPNLTSMAEEFDFDKEERDHFLGAELPLAYSVF
SIPGAMTLGLLADCGSRQQLFVSVVLLGAFATLCTAYVESYSPLFWLRVV
SGTATNAVIPIAFSFLGDLYSPDNRSLPSTLVTAGMGVGILIGQVLAGVT
GPRMGWRAPFVIISLPGLAAGVLTYLCVSEPMRGQSENAVAEMLRGGGGW
EGGRIARKLDWGAFVDMLHIKTNIILILQAFPGTIPWGVLFAYLNDFLSQ
EKGLPVEQATLLVSLFGVGSAVGGIGGGLVGQYTYKRNKRLLPVVMALST
ILGVLPMLVLINSNYASTFYIFVVIIPCTFLAGILANINGTNVRPLLLNV
NLPETRGSAVSVANLVANLGKGLGPSIANAWMERLGGSREGAFNVIFSLW
VLCGGLVFLLTFTLVGDELNVQEEMRRSTLPGRHPQQLKPMSGMMKGRKG
HGYSGDEEEMGLLPSPNAREAIDFDDGYRGASISSSNSRHPHQRHHSLPQ
QQQQQQQQQQQQQQQQQHHHHHHPSTLLTIPVATSSGSIEGPSSKDSPLV
GSAALHHRGSHAHSYATGGVPNAV*

mRNA from alignment at scaffold_34:58623..61098-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9468 ID=mRNA_9468|Name=jgi.p|Nanoce1779_2|606084|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at scaffold_34:58623..61098- (Nannochloropsis oceanica)
CGCGGCGGGATTCGTGACAGAGCAGCCAAAGCACCACAAGGTATGCAACA
CCCTCTGCCCTCCTTCATCCCTAGAAGTTGTCATACCTTGTCAACGTTCG
TAGCAGTAGCACTTCTTCTTGAGGAGCTGGGGCATAATGAGTCCAAAAAT
CCTCACACCCATCCCTTACACTCGTTCATACCAGCAGCTATATGCCTCCT
CCAGCAGGGGGCGGAGCGTCCTTGTCCTCCTCCACTTCCTCCACCTCGGC
CACTCACAGTGCAGCAGCCGCGTCCTCCACCGCCATAGCTGCAGCCTCCC
TGGCATCTTCTCCCCTCCCAGGTGCCACGTCCACACCCTTTCACATCAAC
GGAAAGATGCCGTCTTCGCCTGCAGTATTGCACAAGCCCGATTCTTCCTT
CAATGTGAGCAGCGCACCCAGCCTGGCCGCCGCCGCAGCACAACAAGACC
CAACCAGCGGTAATGCTTGTAGGAGCACCTCGTTCACGCTCGGAATCATT
TGCGCAGGCGTTGCTTGCCTCTTTGCGTCCCAAAATATCATGTCCCCAAA
TCTGACCAGTATGGCAGAGGAATTTGATTTTGACAAGGAAGAACGCGACC
ACTTCTTGGGGGCGGAGCTCCCCCTTGCCTACAGCGTCTTTTCGATTCCA
GGGGCCATGACTCTGGGTCTGCTCGCCGACTGTGGAAGCCGGCAGCAACT
CTTTGTTAGTGTCGTCTTACTAGGTGCCTTTGCCACGCTTTGCACTGCAT
ATGTCGAGAGTTACTCCCCCCTCTTTTGGTTACGAGTTGTCAGTGGAACC
GCTACAAATGCCGTCATTCCCATTGCCTTCTCTTTCCTCGGAGATCTTTA
CTCACCGGACAATCGCTCCTTGCCTTCCACCCTCGTCACGGCCGGGATGG
GCGTTGGAATCCTTATCGGCCAAGTGCTAGCAGGTGTGACGGGGCCTCGC
ATGGGGTGGCGCGCGCCCTTTGTCATTATCTCTCTGCCAGGACTAGCGGC
GGGAGTCTTGACATATTTGTGTGTCTCAGAGCCCATGCGTGGGCAGAGTG
AGAACGCTGTGGCTGAGATGCTGCGAGGTGGAGGAGGGTGGGAGGGAGGG
CGGATCGCGCGGAAGTTGGACTGGGGGGCCTTTGTGGATATGTTGCACAT
TAAGACTAACATTATCTTGATTCTCCAAGCGTTTCCCGGCACAATTCCTT
GGGGCGTGCTTTTTGCTTATTTGAATGATTTTCTGTCGCAAGAGAAGGGG
CTCCCCGTCGAACAGGCCACGCTGTTGGTCTCTTTGTTTGGAGTCGGCTC
AGCGGTCGGGGGAATCGGAGGGGGGTTGGTGGGACAATACACCTACAAGA
GGAACAAGCGCCTTTTGCCTGTTGTGATGGCGCTGAGCACTATTCTGGGT
GTGCTGCCCATGTTAGTGCTGATTAACAGTAACTATGCCTCCACTTTTTA
CATCTTTGTGGTCATTATCCCGTGCACTTTCCTCGCGGGGATTCTGGCCA
ATATAAATGGCACCAACGTACGCCCATTATTGCTGAATGTCAATCTGCCC
GAAACCCGAGGCTCGGCAGTATCGGTCGCGAATCTAGTTGCCAACTTGGG
GAAGGGCCTCGGGCCTAGTATTGCAAATGCTTGGATGGAGCGATTGGGTG
GAAGTAGGGAGGGTGCGTTTAATGTGATATTTTCGTTGTGGGTGCTATGT
GGGGGGCTGGTGTTCCTGTTAACATTTACTCTGGTTGGGGACGAGTTGAA
CGTGCAGGAGGAGATGCGGCGGTCGACGCTCCCAGGGAGGCATCCACAGC
AGCTAAAGCCGATGTCTGGGATGATGAAGGGTCGGAAGGGACATGGATAC
AGTGGAGATGAAGAAGAGATGGGCTTGCTACCGAGCCCTAATGCGCGAGA
AGCCATCGATTTCGACGACGGATATCGTGGTGCTAGCATCAGCAGCAGCA
ATAGCCGACATCCTCACCAAAGACATCATTCCCTTCCGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCATCA
TCATCATCATCCTTCAACTCTTCTGACTATCCCAGTTGCTACTAGCAGCG
GCAGCATTGAGGGTCCTTCCTCCAAAGATTCGCCGCTCGTGGGAAGCGCC
GCGCTTCATCACCGGGGATCGCATGCACACTCATATGCCACTGGAGGAGT
TCCGAATGCTGTTTAAATTGTGAGCACTATGCTGGATTTCGACAACGGAG
AGATTTTAGGGAGGGTAAGAAGGACGAAAGGGAAAGGTGGACTGTATTTA
TTTCATAGCGAAACAAAGGCTGAAAAGTTAAACAATTATCAATAAATTCA
TATGAAAACAGAGGTGTGAAAGACAAATAACAATACTAGCAGGACGATGA
AAAATGACAGAACGTGGTTGTCAATCTCCAGGAGAAGAAATGATAAATTC
TTATGCCTTCATGAAAACTCTAATTG

Coding sequence (CDS) from alignment at scaffold_34:58623..61098-

>mRNA_9468 ID=mRNA_9468|Name=jgi.p|Nanoce1779_2|606084|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_34:58623..61098- (Nannochloropsis oceanica)
ATGCCTCCTCCAGCAGGGGGCGGAGCGTCCTTGTCCTCCTCCACTTCCTC
CACCTCGGCCACTCACAGTGCAGCAGCCGCGTCCTCCACCGCCATAGCTG
CAGCCTCCCTGGCATCTTCTCCCCTCCCAGGTGCCACGTCCACACCCTTT
CACATCAACGGAAAGATGCCGTCTTCGCCTGCAGTATTGCACAAGCCCGA
TTCTTCCTTCAATGTGAGCAGCGCACCCAGCCTGGCCGCCGCCGCAGCAC
AACAAGACCCAACCAGCGGTAATGCTTGTAGGAGCACCTCGTTCACGCTC
GGAATCATTTGCGCAGGCGTTGCTTGCCTCTTTGCGTCCCAAAATATCAT
GTCCCCAAATCTGACCAGTATGGCAGAGGAATTTGATTTTGACAAGGAAG
AACGCGACCACTTCTTGGGGGCGGAGCTCCCCCTTGCCTACAGCGTCTTT
TCGATTCCAGGGGCCATGACTCTGGGTCTGCTCGCCGACTGTGGAAGCCG
GCAGCAACTCTTTGTTAGTGTCGTCTTACTAGGTGCCTTTGCCACGCTTT
GCACTGCATATGTCGAGAGTTACTCCCCCCTCTTTTGGTTACGAGTTGTC
AGTGGAACCGCTACAAATGCCGTCATTCCCATTGCCTTCTCTTTCCTCGG
AGATCTTTACTCACCGGACAATCGCTCCTTGCCTTCCACCCTCGTCACGG
CCGGGATGGGCGTTGGAATCCTTATCGGCCAAGTGCTAGCAGGTGTGACG
GGGCCTCGCATGGGGTGGCGCGCGCCCTTTGTCATTATCTCTCTGCCAGG
ACTAGCGGCGGGAGTCTTGACATATTTGTGTGTCTCAGAGCCCATGCGTG
GGCAGAGTGAGAACGCTGTGGCTGAGATGCTGCGAGGTGGAGGAGGGTGG
GAGGGAGGGCGGATCGCGCGGAAGTTGGACTGGGGGGCCTTTGTGGATAT
GTTGCACATTAAGACTAACATTATCTTGATTCTCCAAGCGTTTCCCGGCA
CAATTCCTTGGGGCGTGCTTTTTGCTTATTTGAATGATTTTCTGTCGCAA
GAGAAGGGGCTCCCCGTCGAACAGGCCACGCTGTTGGTCTCTTTGTTTGG
AGTCGGCTCAGCGGTCGGGGGAATCGGAGGGGGGTTGGTGGGACAATACA
CCTACAAGAGGAACAAGCGCCTTTTGCCTGTTGTGATGGCGCTGAGCACT
ATTCTGGGTGTGCTGCCCATGTTAGTGCTGATTAACAGTAACTATGCCTC
CACTTTTTACATCTTTGTGGTCATTATCCCGTGCACTTTCCTCGCGGGGA
TTCTGGCCAATATAAATGGCACCAACGTACGCCCATTATTGCTGAATGTC
AATCTGCCCGAAACCCGAGGCTCGGCAGTATCGGTCGCGAATCTAGTTGC
CAACTTGGGGAAGGGCCTCGGGCCTAGTATTGCAAATGCTTGGATGGAGC
GATTGGGTGGAAGTAGGGAGGGTGCGTTTAATGTGATATTTTCGTTGTGG
GTGCTATGTGGGGGGCTGGTGTTCCTGTTAACATTTACTCTGGTTGGGGA
CGAGTTGAACGTGCAGGAGGAGATGCGGCGGTCGACGCTCCCAGGGAGGC
ATCCACAGCAGCTAAAGCCGATGTCTGGGATGATGAAGGGTCGGAAGGGA
CATGGATACAGTGGAGATGAAGAAGAGATGGGCTTGCTACCGAGCCCTAA
TGCGCGAGAAGCCATCGATTTCGACGACGGATATCGTGGTGCTAGCATCA
GCAGCAGCAATAGCCGACATCCTCACCAAAGACATCATTCCCTTCCGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCACCATCATCATCATCATCCTTCAACTCTTCTGACTATCCCAGTTGCTA
CTAGCAGCGGCAGCATTGAGGGTCCTTCCTCCAAAGATTCGCCGCTCGTG
GGAAGCGCCGCGCTTCATCACCGGGGATCGCATGCACACTCATATGCCAC
TGGAGGAGTTCCGAATGCTGTTTAA

Synonyms

Publications