jgi.p|Nanoce1779_2|533279, mRNA_9466 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533279
Unique Name	mRNA_9466
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1332
Alignment location	scaffold_34:52184..53907 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533365
Track	FilteredModels2
ProteinId	533279

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:52184..53907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533279	gene_9466	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533279	mRNA_9466-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9466	CDS_9466	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:52184..53907+
coding sequence from alignment at scaffold_34:52184..53907+

mRNA sequence

>mRNA_9466 ID=mRNA_9466|Name=jgi.p|Nanoce1779_2|533279|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGCCTTTACAGCCAGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCA
ACCAGTGTGGCTGCTACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGC
CAAGCCGCACATTTACGCCCACTTCCTACGTCAGCAGTACCACGATCAGA
ACGAGTGCTTGGCAAGCGAAGCCCTTATTCACGACACGCACGTCCACCCC
ATGCCGTAGTACACGACAGTCGACACGCACGTCCACCCTCGTGCGCTGCT
GGGACAGTTTACAGCCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGC
AAACCCCTCTCTATCTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCC
GAAAGGTTTTCGGCCATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCT
CACTAGAGTTGGATGAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCC
CAATTTTTCGCGGGCTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAG
CACCTTTTTGAAGGAGGCAGGGCGCGTGCAACAAGGCCTCCGGGGCCTCG
TCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCTTCTGC
TCGCTGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGCGCGGA
GGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGACTTGA
AGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCGGCTTT
AGGACGAACGCTGCTTATGACCGCTACTATGAGGGTCGGAAGATTCTCAG
CACCATCCTCGAGAACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTA
TCCTCAAGACCCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCC
GCCCGTGACGACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCCGACG
GCTCAACGTCCTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCA
TCGGCTTCTCTCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAACACC
ACCTACTACCTCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAA
AGACGAGGCCATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGG
CAGTGAGTGCGGAGATTAACATTATATTACAAATTCTGGGGGCGAGGATT
CAATACGTCGATGCTTTCTTGGGCAAGGTCCAGGTAGGCTTCACCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTTTCCCTTTCCGTCATATTCCCACGG
TCACGACCGGGTGTGGTGGGCGGTGGACGTAG

protein sequence of jgi.p|Nanoce1779_2|533279

>mRNA_9466-protein ID=mRNA_9466-protein|Name=jgi.p|Nanoce1779_2|533279|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MPLQPGRFKCVNAALVQPVWLLLLLLLALILVVPSRTFTPTSYVSSTTIR
TSAWQAKPLFTTRTSTPCRSTRQSTRTSTLVRCWDSLQPSSTPPSTSSAS
KPLSISSPTLPVGTWPPKGFRPFKSLREVCGNVSLELDEDQRALIGPPTS
QFFAGFRLRELDETNQSTFLKEAGRVQQGLRGLVWFAYLLWPYIGFGIFC
SLIAQVIVYNRNGLSAEDATYLTPLDVKDFPDLKIVHGFVGSILGFSIGF
RTNAAYDRYYEGRKILSTILENSRSIIRDVYSFILKTPSPPSFPPSPPLS
ARDDAAVEVVSDDIRRRLNVLFAFVRQSVRESLIGFSPDSDMAAVPFINT
TYYLDPSFPQLLDLLSKDEAIRYARLSPRSRPGAVSAEINIILQILGARI
QYVDAFLGKVQVGFTLPPSLPPSLSFPFRHIPTVTTGCGGRWT*

mRNA from alignment at scaffold_34:52184..53907+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9466 ID=mRNA_9466|Name=jgi.p|Nanoce1779_2|533279|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_34:52184..53907+ (Nannochloropsis oceanica)
ATGCCTTTACAGCCAGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCA
ACCAGTGTGGCTGCTACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGC
CAAGCCGCACATTTACGCCCACTTCCTACGTCAGCAGTACCACGATCAGA
ACGAGTGCTTGGCAAGCGAAGCCCTTATTCACGACACGCACGTCCACCCC
ATGCCGTAGTACACGACAGTCGACACGCACGTCCACCCTCGTGCGCTGCT
GGGACAGTTTACAGCCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGC
AAACCCCTCTCTATCTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCC
GAAAGGTTTTCGGCCATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCT
CACTAGAGTTGGATGAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCC
CAATTTTTCGCGGGCTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAG
CACCTTTTTGAAGGAGGCAGGGCGCGTGCAACAAGGGTGAGTGCCTTGCG
TGGGTGGATGCCAGTGGCACGTATTTGCTCACCCTCCCTCCCTCCCTCCT
TCCAGCCTCCGGGGCCTCGTCTGGTTTGCCTACCTCCTATGGCCTTACAT
CGGCTTCGGAATCTTCTGCTCGCTGATTGCCCAAGTCATCGTCTACAACA
GGAATGGTCTTAGCGCGGAGGACGCCACGTACCTCACACCCCTGGATGTG
AAGGACTTTCCCGACTTGAAGATCGTGCACGGATTCGTCGGCTCCATTCT
CGGTTTCTCCATCGGTATGCCATCCCTCCCTCCCTGTACTTTGCTTATAT
TTTCTTCCTCCCTCCTTCCCTCCCTTTCTTCCTTCCTCCCTCCCTCCCCT
TGTCAGTCTGTCGTCATGTCTCTCCTTCTCCCACGTTCGTTCCCTCCCTC
CCTCCCGCCCTCCCTCCCTCCTTCCCCTCCCTCAGGCTTTAGGACGAACG
CTGCTTATGACCGCTACTATGAGGGTCGGAAGATTCTCAGGTCAGCACCA
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCGCCTTTCCTCAC
GTCCGTCTCAATTACCACTTACCCACCTGTCCTTTACCCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTGCTTCCTTCCTCGCCCCCTAGCACCATCC
TCGAGAACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTATCCTCAAG
ACCCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCGTGA
CGACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCCGACGGCTCAACG
TCCTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTC
TCTCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAACACCACCTACTA
CCTCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGG
CCATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGT
GCGGAGATTAACATTATATTACAAATTCTGGGGGCGAGGATTCAATACGT
CGATGCTTTCTTGGGCAAGGTCCAGGTAGGCTTCACCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCTTTCCCTTTCCGTCATATTCCCACGGTCACGACC
GGGTGTGGTGGGCGGTGGACGTAG

Coding sequence (CDS) from alignment at scaffold_34:52184..53907+

>mRNA_9466 ID=mRNA_9466|Name=jgi.p|Nanoce1779_2|533279|organism=Nannochloropsis oceanica|type=CDS|length=5328bp|location=Sequence derived from alignment at scaffold_34:52184..53907+ (Nannochloropsis oceanica)
ATGCCTTTACAGCCAGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCA
ACCAGTGTGGCTGCTACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGC
CAAGCCGCACATTTACGCCCACTTCCTACGTCAGCAGTACCACGATCAGA
ACGAGTGCTTGGCAAGCGAAGCCCTTATTCACGACACGCACGTCCACCCC
ATGCCGTAGTACACGACAGTCGACACGCACGTCCACCCTCGTGCGCTGCT
GGGACAGTTTACAGCCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGC
AAACCCCTCTCTATCTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCC
GAAAGGTTTTCGGCCATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCT
CACTAGAGTTGGATGAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCC
CAATTTTTCGCGGGCTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAG
CACCTTTTTGAAGGAGGCAGGGCGCGTGCAACAAGGCCTCCGGGGCCTCG
TCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCTTCTGC
TCGCTGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGCGCGGA
GGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGACTTGA
AGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCGGCTTT
AGGACGAACGCTGCTTATGACCGCTACTATGAGGGTCGGAAGATTCTCAG
CACCATCCTCGAGAACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTA
TCCTCAAGACCCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCC
GCCCGTGACGACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCCGACG
GCTCAACGTCCTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCA
TCGGCTTCTCTCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAACACC
ACCTACTACCTCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAA
AGACGAGGCCATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGG
CAGTGAGTGCGGAGATTAACATTATATTACAAATTCTGGGGGCGAGGATT
CAATACGTCGATGCTTTCTTGGGCAAGGTCCAGGTAGGCTTCACCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTTTCCCTTTCCGTCATATTCCCACGG
TCACGACCGGGTGTGGTGGGCGGTGGACGTAGATGCCTTTACAGCCAGGT
CGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCAGTGTGGCTGCTACT
CCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAGCCGCACATTTACGC
CCACTTCCTACGTCAGCAGTACCACGATCAGAACGAGTGCTTGGCAAGCG
AAGCCCTTATTCACGACACGCACGTCCACCCCATGCCGTAGTACACGACA
GTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGACAGTTTACAGCCAT
CCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAACCCCTCTCTATCTCC
TCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAAGGTTTTCGGCCATT
TAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACTAGAGTTGGATGAGG
ATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAATTTTTCGCGGGCTTT
CGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACCTTTTTGAAGGAGGC
AGGGCGCGTGCAACAAGGCCTCCGGGGCCTCGTCTGGTTTGCCTACCTCC
TATGGCCTTACATCGGCTTCGGAATCTTCTGCTCGCTGATTGCCCAAGTC
ATCGTCTACAACAGGAATGGTCTTAGCGCGGAGGACGCCACGTACCTCAC
ACCCCTGGATGTGAAGGACTTTCCCGACTTGAAGATCGTGCACGGATTCG
TCGGCTCCATTCTCGGTTTCTCCATCGGCTTTAGGACGAACGCTGCTTAT
GACCGCTACTATGAGGGTCGGAAGATTCTCAGCACCATCCTCGAGAACAG
CCGCTCCATCATTCGGGACGTCTACTCCTTTATCCTCAAGACCCCTTCCC
CTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCGTGACGACGCCGCG
GTGGAGGTGGTGAGCGATGACATACGCCGACGGCTCAACGTCCTCTTTGC
TTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTCTCTCCCGACT
CCGACATGGCGGCGGTGCCTTTCATCAACACCACCTACTACCTCGACCCC
TCCTTCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGGCCATACGCTA
TGCCAGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGTGCGGAGATTA
ACATTATATTACAAATTCTGGGGGCGAGGATTCAATACGTCGATGCTTTC
TTGGGCAAGGTCCAGGTAGGCTTCACCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCTTTCCCTTTCCGTCATATTCCCACGGTCACGACCGGGTGTGGTG
GGCGGTGGACGTAGATGCCTTTACAGCCAGGTCGGTTCAAGTGTGTCAAT
GCCGCCTTGGTGCAACCAGTGTGGCTGCTACTCCTCCTGCTCCTTGCCCT
GATCCTTGTAGTGCCAAGCCGCACATTTACGCCCACTTCCTACGTCAGCA
GTACCACGATCAGAACGAGTGCTTGGCAAGCGAAGCCCTTATTCACGACA
CGCACGTCCACCCCATGCCGTAGTACACGACAGTCGACACGCACGTCCAC
CCTCGTGCGCTGCTGGGACAGTTTACAGCCATCCTCCACTCCCCCATCCA
CTAGCTCAGCCAGCAAACCCCTCTCTATCTCCTCTCCGACCCTCCCCGTG
GGAACTTGGCCTCCGAAAGGTTTTCGGCCATTTAAATCCTTACGAGAAGT
GTGCGGAAACGTCTCACTAGAGTTGGATGAGGATCAACGGGCGCTCATCG
GTCCTCCCACCTCCCAATTTTTCGCGGGCTTTCGCCTGCGTGAGCTCGAC
GAGACCAATCAGAGCACCTTTTTGAAGGAGGCAGGGCGCGTGCAACAAGG
CCTCCGGGGCCTCGTCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCT
TCGGAATCTTCTGCTCGCTGATTGCCCAAGTCATCGTCTACAACAGGAAT
GGTCTTAGCGCGGAGGACGCCACGTACCTCACACCCCTGGATGTGAAGGA
CTTTCCCGACTTGAAGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTT
TCTCCATCGGCTTTAGGACGAACGCTGCTTATGACCGCTACTATGAGGGT
CGGAAGATTCTCAGCACCATCCTCGAGAACAGCCGCTCCATCATTCGGGA
CGTCTACTCCTTTATCCTCAAGACCCCTTCCCCTCCCTCTTTCCCTCCCT
CCCCCCCTCTCTCCGCCCGTGACGACGCCGCGGTGGAGGTGGTGAGCGAT
GACATACGCCGACGGCTCAACGTCCTCTTTGCTTTCGTCCGCCAGTCCGT
TCGAGAGTCCCTCATCGGCTTCTCTCCCGACTCCGACATGGCGGCGGTGC
CTTTCATCAACACCACCTACTACCTCGACCCCTCCTTCCCCCAGCTCCTC
GATTTGCTGTCCAAAGACGAGGCCATACGCTATGCCAGACTCTCCCCGCG
GTCACGGCCAGGGGCAGTGAGTGCGGAGATTAACATTATATTACAAATTC
TGGGGGCGAGGATTCAATACGTCGATGCTTTCTTGGGCAAGGTCCAGGTA
GGCTTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTCCCTTTCCG
TCATATTCCCACGGTCACGACCGGGTGTGGTGGGCGGTGGACGTAGATGC
CTTTACAGCCAGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCA
GTGTGGCTGCTACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAG
CCGCACATTTACGCCCACTTCCTACGTCAGCAGTACCACGATCAGAACGA
GTGCTTGGCAAGCGAAGCCCTTATTCACGACACGCACGTCCACCCCATGC
CGTAGTACACGACAGTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGA
CAGTTTACAGCCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAAC
CCCTCTCTATCTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAA
GGTTTTCGGCCATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACT
AGAGTTGGATGAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAAT
TTTTCGCGGGCTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACC
TTTTTGAAGGAGGCAGGGCGCGTGCAACAAGGCCTCCGGGGCCTCGTCTG
GTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCTTCTGCTCGC
TGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGCGCGGAGGAC
GCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGACTTGAAGAT
CGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCGGCTTTAGGA
CGAACGCTGCTTATGACCGCTACTATGAGGGTCGGAAGATTCTCAGCACC
ATCCTCGAGAACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTATCCT
CAAGACCCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCC
GTGACGACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCCGACGGCTC
AACGTCCTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCATCGG
CTTCTCTCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAACACCACCT
ACTACCTCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAAAGAC
GAGGCCATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGGCAGT
GAGTGCGGAGATTAACATTATATTACAAATTCTGGGGGCGAGGATTCAAT
ACGTCGATGCTTTCTTGGGCAAGGTCCAGGTAGGCTTCACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTTTCCCTTTCCGTCATATTCCCACGGTCAC
GACCGGGTGTGGTGGGCGGTGGACGTAG

Synonyms

Publications