jgi.p|Nanoce1779_2|606076, mRNA_9465 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606076
Unique NamemRNA_9465
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length832
Alignment locationscaffold_34:51110..51941 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606162
TrackFilteredModels2
ProteinId606076
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:51110..51941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606076gene_9465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606076mRNA_9465-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9465CDS_9465Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9465 ID=mRNA_9465|Name=jgi.p|Nanoce1779_2|606076|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
AACAGGCACGGAATAAACCGCACAGGCGCCATGGACGACGATGATTTAGA
CGCAATGCTCGATGACGCGGCGGACGACGTTTTAGCCTCTGCTCCGCCCT
CCTCTGCCTCCACCAGAGCAGCTGCCCCGTCCCCGACCGCTGATATTCTC
GACGATGCCGCCGCGGCCATCTTTCAACAACATCAGCCTCCGACACAAAC
AGGAAAGTCGCACGGCATGCTCCGTGTTCCCCGCCCCGCGACCACTCAGC
CCCCGAAACCCAAGGAACCACCCACGCTGGAAGAAGCTGTGGCAGCTGTA
CTCCCTCCTGCCCAGGCAGAAAAATGGCTTGGCGTGCTCCAGGAGGATGC
CGCCGTCCTACAAAGCTACCGCCCCCGTCCTCCTAGCTTTGCCTATCAAT
CATTTCAGCCTTCCAGTGGTGTCAGCAGTTTGACTGGCGGGAGCAAACCG
AAGCGAGGAAGCGATGCGACTCCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGAAGAACAAGGGGGTCCTGGCACGATTTTATCCGAGCTCATCCTCC
GTGCATGCTCTAAAGCAGGCGTGAGCAACACGGAGGGACTCCGGACGGAG
TTGAAGACGAACGATGAGATGAGGGCGAAGTTGGAGGGGTTGTTCGTAAA
GCAGATGAAGAAGGATCTAGTGCCTTATGTGGAGGGGGACGAGAGATTTG
AGAGGGAGAGGTTCCCGGGGACGGCGAGGACGATTTTGGGATTGATGGAG
GAAGAAGGGGAGGAGGGGATGTGAGGAGAAGGGATGGGAGAAAGAGCAAT
CGAAAAGAAGACAAAAGTGTGACTGAGAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|606076

>mRNA_9465-protein ID=mRNA_9465-protein|Name=jgi.p|Nanoce1779_2|606076|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MDDDDLDAMLDDAADDVLASAPPSSASTRAAAPSPTADILDDAAAAIFQQ
HQPPTQTGKSHGMLRVPRPATTQPPKPKEPPTLEEAVAAVLPPAQAEKWL
GVLQEDAAVLQSYRPRPPSFAYQSFQPSSGVSSLTGGSKPKRGSDATPAA
AAAAAAAAEEQGGPGTILSELILRACSKAGVSNTEGLRTELKTNDEMRAK
LEGLFVKQMKKDLVPYVEGDERFERERFPGTARTILGLMEEEGEEGM*
back to top

mRNA from alignment at scaffold_34:51110..51941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9465 ID=mRNA_9465|Name=jgi.p|Nanoce1779_2|606076|organism=Nannochloropsis oceanica|type=mRNA|length=832bp|location=Sequence derived from alignment at scaffold_34:51110..51941- (Nannochloropsis oceanica)
AACAGGCACGGAATAAACCGCACAGGCGCCATGGACGACGATGATTTAGA
CGCAATGCTCGATGACGCGGCGGACGACGTTTTAGCCTCTGCTCCGCCCT
CCTCTGCCTCCACCAGAGCAGCTGCCCCGTCCCCGACCGCTGATATTCTC
GACGATGCCGCCGCGGCCATCTTTCAACAACATCAGCCTCCGACACAAAC
AGGAAAGTCGCACGGCATGCTCCGTGTTCCCCGCCCCGCGACCACTCAGC
CCCCGAAACCCAAGGAACCACCCACGCTGGAAGAAGCTGTGGCAGCTGTA
CTCCCTCCTGCCCAGGCAGAAAAATGGCTTGGCGTGCTCCAGGAGGATGC
CGCCGTCCTACAAAGCTACCGCCCCCGTCCTCCTAGCTTTGCCTATCAAT
CATTTCAGCCTTCCAGTGGTGTCAGCAGTTTGACTGGCGGGAGCAAACCG
AAGCGAGGAAGCGATGCGACTCCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGAAGAACAAGGGGGTCCTGGCACGATTTTATCCGAGCTCATCCTCC
GTGCATGCTCTAAAGCAGGCGTGAGCAACACGGAGGGACTCCGGACGGAG
TTGAAGACGAACGATGAGATGAGGGCGAAGTTGGAGGGGTTGTTCGTAAA
GCAGATGAAGAAGGATCTAGTGCCTTATGTGGAGGGGGACGAGAGATTTG
AGAGGGAGAGGTTCCCGGGGACGGCGAGGACGATTTTGGGATTGATGGAG
GAAGAAGGGGAGGAGGGGATGTGAGGAGAAGGGATGGGAGAAAGAGCAAT
CGAAAAGAAGACAAAAGTGTGACTGAGAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_34:51110..51941-

>mRNA_9465 ID=mRNA_9465|Name=jgi.p|Nanoce1779_2|606076|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_34:51110..51941- (Nannochloropsis oceanica)
ATGGACGACGATGATTTAGACGCAATGCTCGATGACGCGGCGGACGACGT
TTTAGCCTCTGCTCCGCCCTCCTCTGCCTCCACCAGAGCAGCTGCCCCGT
CCCCGACCGCTGATATTCTCGACGATGCCGCCGCGGCCATCTTTCAACAA
CATCAGCCTCCGACACAAACAGGAAAGTCGCACGGCATGCTCCGTGTTCC
CCGCCCCGCGACCACTCAGCCCCCGAAACCCAAGGAACCACCCACGCTGG
AAGAAGCTGTGGCAGCTGTACTCCCTCCTGCCCAGGCAGAAAAATGGCTT
GGCGTGCTCCAGGAGGATGCCGCCGTCCTACAAAGCTACCGCCCCCGTCC
TCCTAGCTTTGCCTATCAATCATTTCAGCCTTCCAGTGGTGTCAGCAGTT
TGACTGGCGGGAGCAAACCGAAGCGAGGAAGCGATGCGACTCCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGAAGAACAAGGGGGTCCTGGCACGAT
TTTATCCGAGCTCATCCTCCGTGCATGCTCTAAAGCAGGCGTGAGCAACA
CGGAGGGACTCCGGACGGAGTTGAAGACGAACGATGAGATGAGGGCGAAG
TTGGAGGGGTTGTTCGTAAAGCAGATGAAGAAGGATCTAGTGCCTTATGT
GGAGGGGGACGAGAGATTTGAGAGGGAGAGGTTCCCGGGGACGGCGAGGA
CGATTTTGGGATTGATGGAGGAAGAAGGGGAGGAGGGGATGTGA
back to top
Synonyms
Publications