jgi.p|Nanoce1779_2|606060, mRNA_9461 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606060
Unique NamemRNA_9461
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length922
Alignment locationscaffold_34:32820..34073 +

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Properties
Property NameValue
TranscriptId606146
TrackFilteredModels2
ProteinId606060
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:32820..34073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606060gene_9461Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606060mRNA_9461-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9461CDS_9461Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9461 ID=mRNA_9461|Name=jgi.p|Nanoce1779_2|606060|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
ACAGGACGCATGGAAGATGCTCCCAGAAGTCTCAAGGAGGATGGCAAGGC
CGAGGAGGGGATGCCTTCGTCAGCATTCAGCTTTCTTGCCTCTTCCTCCT
CCTTGTCATCCTCCTTGCCCAACAGCCACATGGCAGAAACAGAAGCAGCA
ATAGCCTCAGCAGCAGCAACGCCGCTTGCCGATGGAGGGAAAGATGGAGA
AGGTTCAGCAAGCGGCATGTCTTCTTCTTCCCCTTCTTCTCCCTCCATGT
TATTGCCACCTAAGACGGAGATGGCTGTCGAGAATGAGAAGAGGAACGGT
AATGCCACTACCGATGCAGCCGCAGCTGCAGCAGTGCCAGCTGAGAGAGA
GGAAGGAGCCTCCTCAATGCCTCTCTCCGCGTTCAGTTTCGTTTCCTCCT
ATTCGCCCTCTGTGGCAGAATTACCAGCAATTGTATCCGCACCGTTAGAA
AAAGAAGAGGAGGAGAAGAAGGTCAAGGGAGAGAGCACGTCTTCCTTCTC
TGCCTCTGTGTCTGCGTCCTCCTCCCCTTCGTCTTCCTTCTCCTCGCCTA
CCACGAAACGATCGCCATCGCCGACACCACCCAAGACAGCTACAGCACCA
GCGGCAGGAAATGGAGCAGGAGTGAAAGAGACCGCATTAGCACCATCACT
AGCAGCAGTGGAAGCAACACCAGCTCCAACACCAGGAGGAGGAGAAGGAG
CGACAGACGCATCCGTTATCGCGGCTTACGCGTACCTACAGGGCTTGGAC
TCTCCTGTGACTGCTGCTAATTCTTCGGCAGGCAGGGAGGAAGGGCTCGG
ATTGACTTCCCCTGTTGCTGCTTCCTCTTTATTGCCCAGAAAAGGGGCAG
GGAGGGAGGGAGGGCTGGAGGGTGAGGAATCAAGACCTTTAGGTTCTGCT
TCTCCTTTTCTTCCTCCTCCGT
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protein sequence of jgi.p|Nanoce1779_2|606060

>mRNA_9461-protein ID=mRNA_9461-protein|Name=jgi.p|Nanoce1779_2|606060|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MEGKMEKVQQAACLLLPLLLPPCYCHLRRRWLSRMRRGTVMPLPMQPQLQ
QCQLRERKEPPQCLSPRSVSFPPIRPLWQNYQQLYPHR*
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mRNA from alignment at scaffold_34:32820..34073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9461 ID=mRNA_9461|Name=jgi.p|Nanoce1779_2|606060|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at scaffold_34:32820..34073+ (Nannochloropsis oceanica)
ACAGGACGCATGGAAGATGCTCCCAGAAGTCTCAAGGAGGATGGCAAGGC
CGAGGAGGGGATGCCTTCGTCAGGTACGTCTCATGTGCTATTTAGAAGGG
GAGAAAGGGTGATGCGATGATGCTGTGCTTCTCCATCAGAGAGCTCCAGT
GAACAGAGGAAATGTCCCCTGTTGGCACATGTCACTACGTGGATAGGGCT
TTGCTGAGTACGCAATGGACTCCGGAATGAAAGGGAGGAGCAAGACAGTG
ACTGCTCGCTCGTTTGTCGGGGGTTGGACGTCTCGTCGTCCTGCCGCCCA
TATAGGGAGAGGGAAGGCGGGCGTCTTTTCCTGGCTCGACTCCAACAAAC
ACGAGTACCACAAATCGAATCCTAAATCCTTCCCTTCCACACGACCCATA
CACAGCATTCAGCTTTCTTGCCTCTTCCTCCTCCTTGTCATCCTCCTTGC
CCAACAGCCACATGGCAGAAACAGAAGCAGCAATAGCCTCAGCAGCAGCA
ACGCCGCTTGCCGATGGAGGGAAAGATGGAGAAGGTTCAGCAAGCGGCAT
GTCTTCTTCTTCCCCTTCTTCTCCCTCCATGTTATTGCCACCTAAGACGG
AGATGGCTGTCGAGAATGAGAAGAGGAACGGTAATGCCACTACCGATGCA
GCCGCAGCTGCAGCAGTGCCAGCTGAGAGAGAGGAAGGAGCCTCCTCAAT
GCCTCTCTCCGCGTTCAGTTTCGTTTCCTCCTATTCGCCCTCTGTGGCAG
AATTACCAGCAATTGTATCCGCACCGTTAGAAAAAGAAGAGGAGGAGAAG
AAGGTCAAGGGAGAGAGCACGTCTTCCTTCTCTGCCTCTGTGTCTGCGTC
CTCCTCCCCTTCGTCTTCCTTCTCCTCGCCTACCACGAAACGATCGCCAT
CGCCGACACCACCCAAGACAGCTACAGCACCAGCGGCAGGAAATGGAGCA
GGAGTGAAAGAGACCGCATTAGCACCATCACTAGCAGCAGTGGAAGCAAC
ACCAGCTCCAACACCAGGAGGAGGAGAAGGAGCGACAGACGCATCCGTTA
TCGCGGCTTACGCGTACCTACAGGGCTTGGACTCTCCTGTGACTGCTGCT
AATTCTTCGGCAGGCAGGGAGGAAGGGCTCGGATTGACTTCCCCTGTTGC
TGCTTCCTCTTTATTGCCCAGAAAAGGGGCAGGGAGGGAGGGAGGGCTGG
AGGGTGAGGAATCAAGACCTTTAGGTTCTGCTTCTCCTTTTCTTCCTCCT
CCGT
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Coding sequence (CDS) from alignment at scaffold_34:32820..34073+

>mRNA_9461 ID=mRNA_9461|Name=jgi.p|Nanoce1779_2|606060|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_34:32820..34073+ (Nannochloropsis oceanica)
ATGGAGGGAAAGATGGAGAAGGTTCAGCAAGCGGCATGTCTTCTTCTTCC
CCTTCTTCTCCCTCCATGTTATTGCCACCTAAGACGGAGATGGCTGTCGA
GAATGAGAAGAGGAACGGTAATGCCACTACCGATGCAGCCGCAGCTGCAG
CAGTGCCAGCTGAGAGAGAGGAAGGAGCCTCCTCAATGCCTCTCTCCGCG
TTCAGTTTCGTTTCCTCCTATTCGCCCTCTGTGGCAGAATTACCAGCAAT
TGTATCCGCACCGTTAG
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Synonyms
Publications