jgi.p|Nanoce1779_2|658861, mRNA_9460 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658861
Unique NamemRNA_9460
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1654
Alignment locationscaffold_34:31565..33218 -

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Properties
Property NameValue
TranscriptId658947
TrackFilteredModels2
ProteinId658861
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:31565..33218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658861gene_9460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9460CDS_9460Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658861mRNA_9460-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9460 ID=mRNA_9460|Name=jgi.p|Nanoce1779_2|658861|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp
ATGGGTCGTGTGGAAGGGAAGGATTTAGGATTCGATTTGTGGTACTCGTG
TTTGTTGGAGTCGAGCCAGGAAAAGACGCCCGCCTTCCCTCTCCCTATAT
GGGCGGCAGGACGACGAGACGTCCAACCCCCGACAAACGAGCGAGCAGTC
ACTGTCTTGCTCCTCCCTTTCATTCCGGAGTCCATTGCGTACTCAGCAAA
GCCCTATCCACGTAGTGACATGTGCCAACAGGGGACATTTCCTCTGTTCA
CTGGAGCTCTCTGATGGAGAAGCACAGCATCATCGCATCACCCTTTCTCC
CCTTCTAAATAGCACATGAGACGTACCTGACGAAGGCATCCCCTCCTCGG
CCTTGCCATCCTCCTTGAGACTTCTGGGAGCATCTTCCATGCGTCCTGTG
GGCGTTGAGCCATGAATGTTGTGTGCGTGAGAAGGCGGAATAGAAGGAGG
AGGGAGATTATGACATGTAGATGACGACGGGCTTGAAGAATTTGCGTTGT
TCCATACGGCCTTCACACTCTCCCACCCTCCCCTCCCTCCCTCCCTCCCA
AATAGGAGGAGACCCGCACGACCACGGGCCAGCCTAGTGGAGGGAAGATA
CGTGCGTACATTCTTGCCATTGCCTTTCCCCTTTCCTCCTTCCCCTCTCT
TCCTTCGCATTGTCCAATCAGCACCCTGCACCATGCCGCTGCGGGATGGG
GACATCTTCATCCTGGTCGTGTGCTTGGCAGGCTTGGCTTTGATAGTGGG
CGGGTTATTGATATGGTTGGGTCCAGGTGAAGCGATGCCTGAGGAAGAGG
AAGGGGAAGAGGAGGAACAAGAGCAGCTGCAAATGCGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGGTT
GCGGCGACGACGCGGAGAAGGAGTTGGAGTCGATGCAGCAAGAGCGAGGC
ATAGAGCTTTGTGGGAAGACGGGGAAGGAGAGGAGGACGACGAACAAGAG
GGGGAGGGGGACGAGGGGAAATGTAGAGGGGAAGGAGCGGAAGAGCGGCG
GCAACGGAAAAAGGATAAAATTAAAGCGGACAAGAGGGCATTGAAGGAAG
AGACGCGACGAGCGCGAGAAGAGAGAGAACGAAGACATTTACTCGGGCTG
CCCTCTCCTGCACCCAAGGAGGATGAAGAGGACTGGGAGGAGGAGGACGA
GGCGGAGGAGGACGAGGAGGCCAAGACCAAACGAAGAAAACGGGAGGAAA
AAGAGTCCGAATTTCAAATGTGGAAAGCGATGATGCAGGTGGAAGGAGAA
GGGAGTACGGCAGAGGAGGAGATGGAGGAAGAGGATTTGCTCTCATCCTT
TGTTTTGTATATAAAGGAGAGAAAGGTTGTGTTGCTTGACGAGTTGAGTG
CACGGTTTAAGTTGCCTGTAAAAGTGGTCGTAGAACGGTTGGAGGTGCTT
GAAGGGATGGGGAGGCTGAGGGGGGTGGTGGATGACCGGGGGAAGTACAT
AGAAATAGAGGATGAGGAAATGGAGGGAGTCAGACGGTGGGTAGTGGGGA
GGGGGAGAGTTGGGGTGGGTGACTTGGCGCGGGAGAGCAATCGGTTGATT
AAGCTGAGAGGAGGAAGGGAGGGGGTGAAGGAGGGAGGGGGGAAAGTGGC
GTAG
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protein sequence of jgi.p|Nanoce1779_2|658861

>mRNA_9460-protein ID=mRNA_9460-protein|Name=jgi.p|Nanoce1779_2|658861|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPLRDGDIFILVVCLAGLALIVGGLLIWLGPGEAMPEEEEGEEEEQEQLQ
MRGGGGGGGGGGGGGRGGRGRGLRRRRGEGVGVDAARARHRALWEDGEGE
EDDEQEGEGDEGKCRGEGAEERRQRKKDKIKADKRALKEETRRAREERER
RHLLGLPSPAPKEDEEDWEEEDEAEEDEEAKTKRRKREEKESEFQMWKAM
MQVEGEGSTAEEEMEEEDLLSSFVLYIKERKVVLLDELSARFKLPVKVVV
ERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLAR
ESNRLIKLRGGREGVKEGGGKVA*
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mRNA from alignment at scaffold_34:31565..33218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9460 ID=mRNA_9460|Name=jgi.p|Nanoce1779_2|658861|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp|location=Sequence derived from alignment at scaffold_34:31565..33218- (Nannochloropsis oceanica)
ATGGGTCGTGTGGAAGGGAAGGATTTAGGATTCGATTTGTGGTACTCGTG
TTTGTTGGAGTCGAGCCAGGAAAAGACGCCCGCCTTCCCTCTCCCTATAT
GGGCGGCAGGACGACGAGACGTCCAACCCCCGACAAACGAGCGAGCAGTC
ACTGTCTTGCTCCTCCCTTTCATTCCGGAGTCCATTGCGTACTCAGCAAA
GCCCTATCCACGTAGTGACATGTGCCAACAGGGGACATTTCCTCTGTTCA
CTGGAGCTCTCTGATGGAGAAGCACAGCATCATCGCATCACCCTTTCTCC
CCTTCTAAATAGCACATGAGACGTACCTGACGAAGGCATCCCCTCCTCGG
CCTTGCCATCCTCCTTGAGACTTCTGGGAGCATCTTCCATGCGTCCTGTG
GGCGTTGAGCCATGAATGTTGTGTGCGTGAGAAGGCGGAATAGAAGGAGG
AGGGAGATTATGACATGTAGATGACGACGGGCTTGAAGAATTTGCGTTGT
TCCATACGGCCTTCACACTCTCCCACCCTCCCCTCCCTCCCTCCCTCCCA
AATAGGAGGAGACCCGCACGACCACGGGCCAGCCTAGTGGAGGGAAGATA
CGTGCGTACATTCTTGCCATTGCCTTTCCCCTTTCCTCCTTCCCCTCTCT
TCCTTCGCATTGTCCAATCAGCACCCTGCACCATGCCGCTGCGGGATGGG
GACATCTTCATCCTGGTCGTGTGCTTGGCAGGCTTGGCTTTGATAGTGGG
CGGGTTATTGATATGGTTGGGTCCAGGTGAAGCGATGCCTGAGGAAGAGG
AAGGGGAAGAGGAGGAACAAGAGCAGCTGCAAATGCGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGGTT
GCGGCGACGACGCGGAGAAGGAGTTGGAGTCGATGCAGCAAGAGCGAGGC
ATAGAGCTTTGTGGGAAGACGGGGAAGGAGAGGAGGACGACGAACAAGAG
GGGGAGGGGGACGAGGGGAAATGTAGAGGGGAAGGAGCGGAAGAGCGGCG
GCAACGGAAAAAGGATAAAATTAAAGCGGACAAGAGGGCATTGAAGGAAG
AGACGCGACGAGCGCGAGAAGAGAGAGAACGAAGACATTTACTCGGGCTG
CCCTCTCCTGCACCCAAGGAGGATGAAGAGGACTGGGAGGAGGAGGACGA
GGCGGAGGAGGACGAGGAGGCCAAGACCAAACGAAGAAAACGGGAGGAAA
AAGAGTCCGAATTTCAAATGTGGAAAGCGATGATGCAGGTGGAAGGAGAA
GGGAGTACGGCAGAGGAGGAGATGGAGGAAGAGGATTTGCTCTCATCCTT
TGTTTTGTATATAAAGGAGAGAAAGGTTGTGTTGCTTGACGAGTTGAGTG
CACGGTTTAAGTTGCCTGTAAAAGTGGTCGTAGAACGGTTGGAGGTGCTT
GAAGGGATGGGGAGGCTGAGGGGGGTGGTGGATGACCGGGGGAAGTACAT
AGAAATAGAGGATGAGGAAATGGAGGGAGTCAGACGGTGGGTAGTGGGGA
GGGGGAGAGTTGGGGTGGGTGACTTGGCGCGGGAGAGCAATCGGTTGATT
AAGCTGAGAGGAGGAAGGGAGGGGGTGAAGGAGGGAGGGGGGAAAGTGGC
GTAG
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Coding sequence (CDS) from alignment at scaffold_34:31565..33218-

>mRNA_9460 ID=mRNA_9460|Name=jgi.p|Nanoce1779_2|658861|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_34:31565..33218- (Nannochloropsis oceanica)
ATGCCGCTGCGGGATGGGGACATCTTCATCCTGGTCGTGTGCTTGGCAGG
CTTGGCTTTGATAGTGGGCGGGTTATTGATATGGTTGGGTCCAGGTGAAG
CGATGCCTGAGGAAGAGGAAGGGGAAGAGGAGGAACAAGAGCAGCTGCAA
ATGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGG
AGGAAGAGGAAGAGGGTTGCGGCGACGACGCGGAGAAGGAGTTGGAGTCG
ATGCAGCAAGAGCGAGGCATAGAGCTTTGTGGGAAGACGGGGAAGGAGAG
GAGGACGACGAACAAGAGGGGGAGGGGGACGAGGGGAAATGTAGAGGGGA
AGGAGCGGAAGAGCGGCGGCAACGGAAAAAGGATAAAATTAAAGCGGACA
AGAGGGCATTGAAGGAAGAGACGCGACGAGCGCGAGAAGAGAGAGAACGA
AGACATTTACTCGGGCTGCCCTCTCCTGCACCCAAGGAGGATGAAGAGGA
CTGGGAGGAGGAGGACGAGGCGGAGGAGGACGAGGAGGCCAAGACCAAAC
GAAGAAAACGGGAGGAAAAAGAGTCCGAATTTCAAATGTGGAAAGCGATG
ATGCAGGTGGAAGGAGAAGGGAGTACGGCAGAGGAGGAGATGGAGGAAGA
GGATTTGCTCTCATCCTTTGTTTTGTATATAAAGGAGAGAAAGGTTGTGT
TGCTTGACGAGTTGAGTGCACGGTTTAAGTTGCCTGTAAAAGTGGTCGTA
GAACGGTTGGAGGTGCTTGAAGGGATGGGGAGGCTGAGGGGGGTGGTGGA
TGACCGGGGGAAGTACATAGAAATAGAGGATGAGGAAATGGAGGGAGTCA
GACGGTGGGTAGTGGGGAGGGGGAGAGTTGGGGTGGGTGACTTGGCGCGG
GAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGTGAAGGA
GGGAGGGGGGAAAGTGGCGTAG
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Synonyms
Publications