jgi.p|Nanoce1779_2|574771, mRNA_946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574771
Unique NamemRNA_946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1388
Alignment locationscaffold_2:823532..824919 -

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Properties
Property NameValue
TranscriptId574857
TrackFilteredModels2
ProteinId574771
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:823532..824919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574771gene_946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574771mRNA_946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_946CDS_946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_946 ID=mRNA_946|Name=jgi.p|Nanoce1779_2|574771|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
ACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCGGCGAT
GGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACCAGCCT
CCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCACATGGC
TTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGAGCACA
TGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACCCTCCC
TCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGTACGGA
CTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCAAGGCG
TCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAGTTGTG
ATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCCGTCCT
GGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACTGCGTC
GCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGATTGGA
CGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAGGAGGA
AAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGCGAAAG
AATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGTATCGT
CTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAATGCTAA
GGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGCGAGGA
CTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGACCGAG
GTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGCAACTG
CAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCCATTGA
GCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTAAGGCC
GTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTCCAGAC
CAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCCATCTG
TTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAACGCCTT
CGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCAACGCC
ACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAATCCTTG
CCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGATTGGA
GCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCTCAAGA
AGAACAAGCAAAGAAATAAATTTATTACCACCAGAAGT
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protein sequence of jgi.p|Nanoce1779_2|574771

>mRNA_946-protein ID=mRNA_946-protein|Name=jgi.p|Nanoce1779_2|574771|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MDQPPPPSFINPFALLNDHMAYLVLQLEQLVVQIEEHMNPSLVGHSFIVV
VDPPSVQTEGGVDEGELHRTDLDSLPLGVSAGAMRQGVRQNMSTGEIMHH
FPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLED
GKIGRLGQYSVQMQGTNEEEESESSSSSISVFLEQAKELGTFLQAELARL
LGYRLVFGVGRTMEEARRNAKGLLLLRSKPPGKRHARTEVDHAHTDNHAT
ERTEVQSPAEGEKYKTYARNCKGVLDSKDEKEEYGPLSLAEFICQTCKAS
FFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKT
EERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFL
CEIGAPPIHLPGWPPPPGSQEEQAKK*
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mRNA from alignment at scaffold_2:823532..824919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_946 ID=mRNA_946|Name=jgi.p|Nanoce1779_2|574771|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_2:823532..824919- (Nannochloropsis oceanica)
ACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCGGCGAT
GGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACCAGCCT
CCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCACATGGC
TTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGAGCACA
TGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACCCTCCC
TCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGTACGGA
CTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCAAGGCG
TCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAGTTGTG
ATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCCGTCCT
GGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACTGCGTC
GCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGATTGGA
CGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAGGAGGA
AAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGCGAAAG
AATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGTATCGT
CTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAATGCTAA
GGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGCGAGGA
CTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGACCGAG
GTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGCAACTG
CAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCCATTGA
GCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTAAGGCC
GTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTCCAGAC
CAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCCATCTG
TTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAACGCCTT
CGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCAACGCC
ACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAATCCTTG
CCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGATTGGA
GCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCTCAAGA
AGAACAAGCAAAGAAATAAATTTATTACCACCAGAAGT
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Coding sequence (CDS) from alignment at scaffold_2:823532..824919-

>mRNA_946 ID=mRNA_946|Name=jgi.p|Nanoce1779_2|574771|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at scaffold_2:823532..824919- (Nannochloropsis oceanica)
ATGGACCAGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAA
TGACCACATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGA
TTGAAGAGCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTC
GTCGACCCTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCT
GCACCGTACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCA
TGCGGCAAGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCAC
TTTCCAGTTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTC
CGCACCCGTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCA
GGCTACTGCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGAC
GGCAAGATTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAA
TGAGGAGGAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCG
AGCAGGCGAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTG
CTGGGGTATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCG
CCGAAATGCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGA
GACACGCGAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACA
GAAAGGACCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTA
TGCACGCAACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAAT
ACGGGCCATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGC
TTTTTTAAGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCA
AAACTTCCAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTC
TGTACCCATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACC
GAGGAACGCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACC
GAAGTCAACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGA
GCGAAATCCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTG
TGCGAGATTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACC
TGGGTCTCAAGAAGAACAAGCAAAGAAATAA
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Synonyms
Publications