jgi.p|Nanoce1779_2|267269, mRNA_9459 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|267269
Unique NamemRNA_9459
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1061
Alignment locationscaffold_34:30496..31637 -

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Properties
Property NameValue
TranscriptId267355
TrackFilteredModels2
ProteinId267269
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:30496..31637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|267269gene_9459Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|267269mRNA_9459-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9459CDS_9459Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9459 ID=mRNA_9459|Name=jgi.p|Nanoce1779_2|267269|organism=Nannochloropsis oceanica|type=mRNA|length=1061bp
GGAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGTGAAGG
AGGGAGGGGGGAAAGTGGCGTAGAGGACGGGGAGCGTAAATTTTATTTAT
GGCTGCGGAGTAGGAAAGTATGAGAGTTATAGGGCAATAGTGACGAGAAC
AACAACAAAAAGAACAATATCAAGAAGAAAAAGAATAACAACATTAACCC
CTTCGCAAAAGCAGAATTCCTCTGCCAGTCTTGATCACCCGCACTCAAGC
TGCGAGGTATCTTTGAGTACAAGCATCAGTGTTATTGTCTCCACCCTCTT
CTTCCTTCCTTATGCTCCTCCCTCTCCGATCCATTCCATGTTCCCTTCTC
ATTTTGGCCGCTCTCTGTCTATTTTCTTCCTTTTCTCTTCTTAAACATAT
ACATATACGCTCTACGGTCTTTTCTCAATGTGTTCCCGCTCCTGTCCGTA
TCTCTCTTCTATCCACCTCCTGTATCATTATTTTCACTTCATCATTCTTA
CGACCTCATCTACACCTATCACACCCAGCCCTCATGAACAAAACACCTGC
AGCCACTCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTC
CTCCTTCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCAGCCCGACCTCCC
TCCCTTCCTCCCTCCTCCTTTCCTTCGCTTTCCTCCCAACCAAGTCGCAC
TGCGTTATCGACATCCTTCCTCGACCTCCCGATCTCCCGCCCTCTCTCCA
TCCCTCCCTCCTTTTCCTCCCTCTCTCCTCCATCCTCCAGCCACGGCCAC
TCCTCCGCTCCTCCCCCTTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCT
GCCTCAGCCTCTCTTCGTCCCGTGCTTTCAGCTCGTCCAGGGTCCACGAT
CGTTCCCAGAATTCATATTTTAATTTCAGCGTTAACTTGGCCTCGCTGAC
CCCCTCCTTTTCGATCCTCGTCCCGAATCTCGACACACGCAGACGCAATT
GAAATTCCTTCGTCACCCCTCCCTCCATCACGTCCTCCCCCCCCCCCTTG
TCCTCCGCCGC
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protein sequence of jgi.p|Nanoce1779_2|267269

>mRNA_9459-protein ID=mRNA_9459-protein|Name=jgi.p|Nanoce1779_2|267269|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MLLPLRSIPCSLLILAALCLFSSFSLLKHIHIRSTVFSQCVPAPVRISLL
STSCIIIFTSSFLRPHLHLSHPALMNKTPAATLSPPPPPPPPPSSSPPSS
PSPSPPPPPARPPSLPPSSFPSLSSQPSRTALSTSFLDLPISRPLSIPPS
FSSLSPPSSSHGHSSAPPPFLLLLLFLFLLPQPLFVPCFQLVQGPRSFPE
FIF*
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mRNA from alignment at scaffold_34:30496..31637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9459 ID=mRNA_9459|Name=jgi.p|Nanoce1779_2|267269|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp|location=Sequence derived from alignment at scaffold_34:30496..31637- (Nannochloropsis oceanica)
GGAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGTGAAGG
AGGGAGGGGGGAAAGTGGCGTAGAGGACGGGGAGCGTAAATTTTATTTAT
GGCTGCGGAGTAGGAAAGTATGAGAGTTATAGGGCAATAGTGACGAGAAC
AACAACAAAAAGAACAATATCAAGAAGAAAAAGAATAACAACATTAACCC
CTTCGCAAAAGCAGAATTCCTCTGCCAGTCTTGATCACCCGCACTCAAGC
TGCGAGGTATCTTTGAGTACAAGCATCAGTGTTATTGTCTCCACCCTCTT
CTTCCTTCCTTATGCTCCTCCCTCTCCGATCCATTCCATGTTCCCTTCTC
ATTTTGGCCGCTCTCTGTCTATTTTCTTCCTTTTCTCTTCTTAAACATAT
ACATATACGCTCTACGGTCTTTTCTCAATGTGTTCCCGCTCCTGTCCGTA
TCTCTCTTCTATCCACCTCCTGTATCATTATTTTCACTTCATCATTCTTA
CGACCTCATCTACACCTATCACACCCAGCCCTCATGAACAAAACACCTGC
AGCCACTCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTC
CTCCTTCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCAGCCCGACCTCCC
TCCCTTCCTCCCTCCTCCTTTCCTTCGCTTTCCTCCCAACCAAGTCGCAC
TGCGTTATCGACATCCTTCCTCGACCTCCCGATCTCCCGCCCTCTCTCCA
TCCCTCCCTCCCTTCCCCCCTCATGCAATCACACATGCCGCCGACGCCAC
CGCCGCCGCCGACGCCCCCTCCCTCCCTCTTCCCCTCCCTCCTTTTCCTC
CCTCTCTCCTCCATCCTCCAGCCACGGCCACTCCTCCGCTCCTCCCCCTT
TCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTGCCTCAGCCTCTCTTCGTC
CCGTGCTTTCAGCTCGTCCAGGGTCCACGATCGTTCCCAGAATTCATATT
TTAATTTCAGCGTTAACTTGGCCTCGCTGACCCCCTCCTTTTCGATCCTC
GTCCCGAATCTCGACACACGCAGACGCAATTGAAATTCCTTCGTCACCCC
TCCCTCCATCACGTCCTCCCCCCCCCCCTTGTCCTCCGCCGC
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Coding sequence (CDS) from alignment at scaffold_34:30496..31637-

>mRNA_9459 ID=mRNA_9459|Name=jgi.p|Nanoce1779_2|267269|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_34:30496..31637- (Nannochloropsis oceanica)
CCCTCCCTCCTTTTCCTCCCTCTCTCCTCCATCCTCCAGCCACGGCCACT
CCTCCGCTCCTCCCCCTTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTG
CCTCAGCCTCTCTTCGTCCCGTGCTTTCAGCTCGTCCAGGGTCCACGATC
GTTCCCAGAATTCATATTTTAAATGCTCCTCCCTCTCCGATCCATTCCAT
GTTCCCTTCTCATTTTGGCCGCTCTCTGTCTATTTTCTTCCTTTTCTCTT
CTTAAACATATACATATACGCTCTACGGTCTTTTCTCAATGTGTTCCCGC
TCCTGTCCGTATCTCTCTTCTATCCACCTCCTGTATCATTATTTTCACTT
CATCATTCTTACGACCTCATCTACACCTATCACACCCAGCCCTCATGAAC
AAAACACCTGCAGCCACTCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTCTTCTTCTCCTCCTTCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCAG
CCCGACCTCCCTCCCTTCCTCCCTCCTCCTTTCCTTCGCTTTCCTCCCAA
CCAAGTCGCACTGCGTTATCGACATCCTTCCTCGACCTCCCGATCTCCCG
CCCTCTCTCCATCCCTCCCTCCTTTTCCTCCCTCTCTCCTCCATCCTCCA
GCCACGGCCACTCCTCCGCTCCTCCCCCTTTCCTCCTCCTCCTCCTCTTC
CTCTTCCTCCTGCCTCAGCCTCTCTTCGTCCCGTGCTTTCAGCTCGTCCA
GGGTCCACGATCGTTCCCAGAATTCATATTTTAAATGCTCCTCCCTCTCC
GATCCATTCCATGTTCCCTTCTCATTTTGGCCGCTCTCTGTCTATTTTCT
TCCTTTTCTCTTCTTAAACATATACATATACGCTCTACGGTCTTTTCTCA
ATGTGTTCCCGCTCCTGTCCGTATCTCTCTTCTATCCACCTCCTGTATCA
TTATTTTCACTTCATCATTCTTACGACCTCATCTACACCTATCACACCCA
GCCCTCATGAACAAAACACCTGCAGCCACTCTTTCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTTCTTCTTCTCCTCCTTCTTCTCCTTCTCCTTCTCCTC
CTCCTCCTCCAGCCCGACCTCCCTCCCTTCCTCCCTCCTCCTTTCCTTCG
CTTTCCTCCCAACCAAGTCGCACTGCGTTATCGACATCCTTCCTCGACCT
CCCGATCTCCCGCCCTCTCTCCAT
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Synonyms
Publications