jgi.p|Nanoce1779_2|606047, mRNA_9457 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606047
Unique NamemRNA_9457
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length761
Alignment locationscaffold_34:23367..24127 -

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Properties
Property NameValue
TranscriptId606133
TrackFilteredModels2
ProteinId606047
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:23367..24127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606047gene_9457Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606047mRNA_9457-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9457CDS_9457Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9457 ID=mRNA_9457|Name=jgi.p|Nanoce1779_2|606047|organism=Nannochloropsis oceanica|type=mRNA|length=761bp
CTGGACATGAATGGATTTGCCATGACCAATGTGTCGAATGTCCACATTGG
GAACATTCACACCACACTGAGTACGACCGAAACCGGTGGTGCCTTTGCTA
TTTCCACGTATAACGGCAGCGCTTGGGACTCTACCCTGTCGGCTACCGAG
GGGCAGGTAGAAACTGCCTTGGTGGCGAAATCATGGGCCTCCGTGGTAGG
AAACTTCATGGTGGCTGGCAATATTTCCGTGGTGGTTTCGATGATCTTTG
GAAGGGAAGTGAGTCTGACCACCATCACCTTGTTTGGAGACCTTGATATC
AGGGGTATCACGACCAACACGCGCATTGAGTCCAACATTGTGCAGGTGGG
GGACAAGAACATTGAATTGGGTTTCCTGGAAGTCGACGACCTGGCAAATC
TTCATGGGCCTGGGATCACGATTGGGGCTGGGGGTGGTATGATTGCCACT
CGTCCTGAACTGGTCTACAATTCTTTATTCGGGGCGTGGCAGCCTAACAT
TGATATTATTCCCAAGGGCCCGTCTGCTACAGACAGTGCCAGGATGGTGA
CGGATGGTCATTTTATTTCGAGCTCCGTGGCTGATGCCAACATTTTTACT
AAGATGGACTCGACATCGATTAATTTTGGCAAGAAGTGGCGCCTCCAGCT
CAACAGTTCTGATGATACCATGGAACTCCAGCACTTCGAGTCGAGCACGT
GGGTCTCCAAATTCACATACACGGCCTAAGTAGATGATAGATAGACGATG
ATATACATAGG
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protein sequence of jgi.p|Nanoce1779_2|606047

>mRNA_9457-protein ID=mRNA_9457-protein|Name=jgi.p|Nanoce1779_2|606047|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MNGFAMTNVSNVHIGNIHTTLSTTETGGAFAISTYNGSAWDSTLSATEGQ
VETALVAKSWASVVGNFMVAGNISVVVSMIFGREVSLTTITLFGDLDIRG
ITTNTRIESNIVQVGDKNIELGFLEVDDLANLHGPGITIGAGGGMIATRP
ELVYNSLFGAWQPNIDIIPKGPSATDSARMVTDGHFISSSVADANIFTKM
DSTSINFGKKWRLQLNSSDDTMELQHFESSTWVSKFTYTA*
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mRNA from alignment at scaffold_34:23367..24127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9457 ID=mRNA_9457|Name=jgi.p|Nanoce1779_2|606047|organism=Nannochloropsis oceanica|type=mRNA|length=761bp|location=Sequence derived from alignment at scaffold_34:23367..24127- (Nannochloropsis oceanica)
CTGGACATGAATGGATTTGCCATGACCAATGTGTCGAATGTCCACATTGG
GAACATTCACACCACACTGAGTACGACCGAAACCGGTGGTGCCTTTGCTA
TTTCCACGTATAACGGCAGCGCTTGGGACTCTACCCTGTCGGCTACCGAG
GGGCAGGTAGAAACTGCCTTGGTGGCGAAATCATGGGCCTCCGTGGTAGG
AAACTTCATGGTGGCTGGCAATATTTCCGTGGTGGTTTCGATGATCTTTG
GAAGGGAAGTGAGTCTGACCACCATCACCTTGTTTGGAGACCTTGATATC
AGGGGTATCACGACCAACACGCGCATTGAGTCCAACATTGTGCAGGTGGG
GGACAAGAACATTGAATTGGGTTTCCTGGAAGTCGACGACCTGGCAAATC
TTCATGGGCCTGGGATCACGATTGGGGCTGGGGGTGGTATGATTGCCACT
CGTCCTGAACTGGTCTACAATTCTTTATTCGGGGCGTGGCAGCCTAACAT
TGATATTATTCCCAAGGGCCCGTCTGCTACAGACAGTGCCAGGATGGTGA
CGGATGGTCATTTTATTTCGAGCTCCGTGGCTGATGCCAACATTTTTACT
AAGATGGACTCGACATCGATTAATTTTGGCAAGAAGTGGCGCCTCCAGCT
CAACAGTTCTGATGATACCATGGAACTCCAGCACTTCGAGTCGAGCACGT
GGGTCTCCAAATTCACATACACGGCCTAAGTAGATGATAGATAGACGATG
ATATACATAGG
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Coding sequence (CDS) from alignment at scaffold_34:23367..24127-

>mRNA_9457 ID=mRNA_9457|Name=jgi.p|Nanoce1779_2|606047|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_34:23367..24127- (Nannochloropsis oceanica)
ATGAATGGATTTGCCATGACCAATGTGTCGAATGTCCACATTGGGAACAT
TCACACCACACTGAGTACGACCGAAACCGGTGGTGCCTTTGCTATTTCCA
CGTATAACGGCAGCGCTTGGGACTCTACCCTGTCGGCTACCGAGGGGCAG
GTAGAAACTGCCTTGGTGGCGAAATCATGGGCCTCCGTGGTAGGAAACTT
CATGGTGGCTGGCAATATTTCCGTGGTGGTTTCGATGATCTTTGGAAGGG
AAGTGAGTCTGACCACCATCACCTTGTTTGGAGACCTTGATATCAGGGGT
ATCACGACCAACACGCGCATTGAGTCCAACATTGTGCAGGTGGGGGACAA
GAACATTGAATTGGGTTTCCTGGAAGTCGACGACCTGGCAAATCTTCATG
GGCCTGGGATCACGATTGGGGCTGGGGGTGGTATGATTGCCACTCGTCCT
GAACTGGTCTACAATTCTTTATTCGGGGCGTGGCAGCCTAACATTGATAT
TATTCCCAAGGGCCCGTCTGCTACAGACAGTGCCAGGATGGTGACGGATG
GTCATTTTATTTCGAGCTCCGTGGCTGATGCCAACATTTTTACTAAGATG
GACTCGACATCGATTAATTTTGGCAAGAAGTGGCGCCTCCAGCTCAACAG
TTCTGATGATACCATGGAACTCCAGCACTTCGAGTCGAGCACGTGGGTCT
CCAAATTCACATACACGGCCTAA
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Synonyms
Publications