jgi.p|Nanoce1779_2|606043, mRNA_9456 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606043
Unique NamemRNA_9456
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length744
Alignment locationscaffold_34:22162..22905 +

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Properties
Property NameValue
TranscriptId606129
TrackFilteredModels2
ProteinId606043
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:22162..22905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606043gene_9456Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606043mRNA_9456-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9456CDS_9456Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9456 ID=mRNA_9456|Name=jgi.p|Nanoce1779_2|606043|organism=Nannochloropsis oceanica|type=mRNA|length=744bp
CTCGAAATTGAGCGGAAAGGCACCTCCCCGGCTGACATTGATACAGGAAG
AAAAGCTTCTGGACATGTTCCAAAACATCCAAGAGCCTTTTCCAAAACAC
TGTCCACCAGATCGTACCAATATGTTGAACTATAGCTACATCCCGCGTAA
ACTCACACAGATTTTGGGCTGGTATGATCTAATGGATTTCTTTCCATTGT
TAAAGTCACGATCCAAAGTTCATACTCAAGACATACTATGGCAGAAAATA
TGCAAGGAGGCTAATTTCCCATTTTACAAATCTATTGCGTAAAGCCCATC
TCACAGTCCTGGCCAATGCAAGTTTTCTACACCGAATTCTACTACTGTGA
ACAGCTGAGACGATATCCTACCTACTGTGCCGCGGCTTTACGTAAAACTG
CACAGCAATGGTCAAATGCGCGCATGCAACACATGAATTGTACGAATGTG
GTCATTTGCAGCAAAATATTGGATTCACTTGCACAAAAACCATTCCACGA
AGATTATAGGCAATGCTTAGAAACCGTATTTGCCACGATGCAAGTCGACA
AGTCGTGGAAAGTCGAAGATTTGTTGTCATTATGGCGCAATGTCATCGTT
GGAGACGACCTTGTTCACGACATTGTCACCACTTCCTCTCGTTCTGACAT
TACGATGGACGTCGAAGAAGCCGTCGAACTCACACGACTACTCGATACCT
TTGGACAAGAAGACCTACTGGACGCGTTCTCAGACGAAGAAGAG
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protein sequence of jgi.p|Nanoce1779_2|606043

>mRNA_9456-protein ID=mRNA_9456-protein|Name=jgi.p|Nanoce1779_2|606043|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MFQNIQEPFPKHCPPDRTNMLNYSYIPRKLTQILGWYDLMDFFPLLKSRS
KVHTQDILWQKICKEANFPFYKSIA*
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mRNA from alignment at scaffold_34:22162..22905+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9456 ID=mRNA_9456|Name=jgi.p|Nanoce1779_2|606043|organism=Nannochloropsis oceanica|type=mRNA|length=744bp|location=Sequence derived from alignment at scaffold_34:22162..22905+ (Nannochloropsis oceanica)
CTCGAAATTGAGCGGAAAGGCACCTCCCCGGCTGACATTGATACAGGAAG
AAAAGCTTCTGGACATGTTCCAAAACATCCAAGAGCCTTTTCCAAAACAC
TGTCCACCAGATCGTACCAATATGTTGAACTATAGCTACATCCCGCGTAA
ACTCACACAGATTTTGGGCTGGTATGATCTAATGGATTTCTTTCCATTGT
TAAAGTCACGATCCAAAGTTCATACTCAAGACATACTATGGCAGAAAATA
TGCAAGGAGGCTAATTTCCCATTTTACAAATCTATTGCGTAAAGCCCATC
TCACAGTCCTGGCCAATGCAAGTTTTCTACACCGAATTCTACTACTGTGA
ACAGCTGAGACGATATCCTACCTACTGTGCCGCGGCTTTACGTAAAACTG
CACAGCAATGGTCAAATGCGCGCATGCAACACATGAATTGTACGAATGTG
GTCATTTGCAGCAAAATATTGGATTCACTTGCACAAAAACCATTCCACGA
AGATTATAGGCAATGCTTAGAAACCGTATTTGCCACGATGCAAGTCGACA
AGTCGTGGAAAGTCGAAGATTTGTTGTCATTATGGCGCAATGTCATCGTT
GGAGACGACCTTGTTCACGACATTGTCACCACTTCCTCTCGTTCTGACAT
TACGATGGACGTCGAAGAAGCCGTCGAACTCACACGACTACTCGATACCT
TTGGACAAGAAGACCTACTGGACGCGTTCTCAGACGAAGAAGAG
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Coding sequence (CDS) from alignment at scaffold_34:22162..22905+

>mRNA_9456 ID=mRNA_9456|Name=jgi.p|Nanoce1779_2|606043|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_34:22162..22905+ (Nannochloropsis oceanica)
ATGTTCCAAAACATCCAAGAGCCTTTTCCAAAACACTGTCCACCAGATCG
TACCAATATGTTGAACTATAGCTACATCCCGCGTAAACTCACACAGATTT
TGGGCTGGTATGATCTAATGGATTTCTTTCCATTGTTAAAGTCACGATCC
AAAGTTCATACTCAAGACATACTATGGCAGAAAATATGCAAGGAGGCTAA
TTTCCCATTTTACAAATCTATTGCGTAA
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Synonyms
Publications