jgi.p|Nanoce1779_2|606038, mRNA_9454 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606038
Unique Name	mRNA_9454
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1441
Alignment location	scaffold_34:13490..15707 +

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Properties


Property Name	Value
TranscriptId	606124
Track	FilteredModels2
ProteinId	606038

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:13490..15707 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606038	gene_9454	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606038	mRNA_9454-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9454	CDS_9454	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:13490..15707+
coding sequence from alignment at scaffold_34:13490..15707+

mRNA sequence

>mRNA_9454 ID=mRNA_9454|Name=jgi.p|Nanoce1779_2|606038|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
ACAGAGCAAAATTCGAAGAGATACCGCATCCTAAAACAATGAACACTGTC
ACCGATGAAAAGCCGCTTTCTCAGAAAGTAGTCAGAGAACTCTTTTTTGC
TTATCGGTGGGAGATGAGAAACAGGGAATGCTGCATTCCCGTAGACATCG
TGGCTACGCATCTGGCCGTCCCTGTGGGGTTATTGCAGTCCCTCATATCC
GGCAACAATGGCTTCCATTGGTCCGATTACTGCAGCGGAGGACCCAGTGA
GATTCATTTAGAGTGTCCCAAGACAAAGCAGGTGCACCTGTGCTGGAACA
ATGCCTCCCATCTCCTCCTCTCTTTCAAGGGCATGTTGAAGCTGGTATCC
CTTATACAGGACAACGAAGTGGCGGCAAACGTCCGTAACTACCTGTGCAA
CACTTTAGAGGACGAGTTTGCGCGGATCGAAGCCGCGCACGACAGCACCC
TTCGCTTGTTGGCGGATGACCTTGAAGTGCGGACGGTCCTTCGAGAGACC
CGTCAAAAATACTATCCTGCTTTGACAGCCATGGCAGGCAAAGGTTGGGT
TGACCATTGGCTGGGGAAGGTGTTCAAGAATGACCTCGTCGGAATCAAAA
CATTTAATGACCGTGTAACGTTTAAGGATCGCACGGGGATTAGCCACAGA
TCTTATAAAAACTGCTTGACGCCATTGGGGGCTAATATGAATCGGGAGAT
GTACTTGATGGCGAAGATGCTCCTTGACAAGGGACATCCCATTGAGGAGG
TGTACCATATCACTCGAAAGTCGATGCTTGCAGTCCAGAAGGGCTACAAT
TGTTGCCGACGCCTGAAGAAAAGGGACAAGATGCGGATGATGACCCGTCC
TGGCTCCAGGAAGCGCCGACAGCTGCAGCTTGCAAACGAGCCGACGAACG
TGCGTCCTTGCACCCGCGCACTCGCCTCCATGCGGCCCCCGGCTACCCCC
ATGATGCGCCCGGAAGAAAATCAGTACGAGACGGAGGATGAGGAGTACAA
CTAAGACGTTTGTGGCCCGTGAGTACAGAAGAGCACGAAAATGACACACG
ACGAGTCCAAAGGCAGACATGCAAGAAACGATGAAAGGACGGGAGAATCA
ACGAGAACAACGGGGAGAGAAAAGGGGCACATTCCAAGGAGAGAACCACA
GACAGAGACAGAGAGAGACGGCGAAGGCCATGCGGCATGAGGGGGCAAGA
AAAAGAGCCAGCTTGCGCTACTCGACTTTAGTACGCTGGTCTTTTCCTCG
TTGCCTGCCATGTCTCAACGCCAACGCCCCATCCTGCACACACGCCACAC
ACCACCCAAAACAAACACACATGGATGGAAAACAAAGGGAAAGGGGGGAT
CCCCATCACGGTATTCACTTCATACGACGTCATAGGAGGATAGAGCAACC
TCCACATAAGGAGAAAGATAACAAGCGCAAGATGCATACAA

protein sequence of jgi.p|Nanoce1779_2|606038

>mRNA_9454-protein ID=mRNA_9454-protein|Name=jgi.p|Nanoce1779_2|606038|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MNTVTDEKPLSQKVVRELFFAYRWEMRNRECCIPVDIVATHLAVPVGLLQ
SLISGNNGFHWSDYCSGGPSEIHLECPKTKQVHLCWNNASHLLLSFKGML
KLVSLIQDNEVAANVRNYLCNTLEDEFARIEAAHDSTLRLLADDLEVRTV
LRETRQKYYPALTAMAGKGWVDHWLGKVFKNDLVGIKTFNDRVTFKDRTG
ISHRSYKNCLTPLGANMNREMYLMAKMLLDKGHPIEEVYHITRKSMLAVQ
KGYNCCRRLKKRDKMRMMTRPGSRKRRQLQLANEPTNVRPCTRALASMRP
PATPMMRPEENQYETEDEEYN*

mRNA from alignment at scaffold_34:13490..15707+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9454 ID=mRNA_9454|Name=jgi.p|Nanoce1779_2|606038|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at scaffold_34:13490..15707+ (Nannochloropsis oceanica)
ACAGAGCAAAATTCGAAGAGATACCGCATCCTAAAACAATGAACACTGTC
ACCGATGAAAAGCCGCTTTCTCAGAAAGTAGTCAGAGAACTCTTTTTTGC
TTATCGGTGGGAGATGAGAAACAGGGAATGCTGCATTCCCGTAGACATCG
TGGCTACGCATCTGGCCGTCCCTGTGGGGTTATTGCAGTCCCTCATATCC
GGCAACAATGGCTTCCATTGGTCCGATTACTGCAGCGGAGGACCCAGTGA
GATTCATTTAGAGTGTCCCAAGACAAAGCAGGTGCACCTGTGCTGGAACA
ATGCCTCCCATCTCCTCCTCTCTTTCAAGGGCATGTTGTAAGTACCTCTC
TCACATCGTTCTGAAAGAGGGCTGGGTCTTCTTCCTCCTCTCGTAACCTT
TGAATGTTACTCTGTCAGTCTCCTCGTTGCATTTACGGTGTTATTTCATC
GGCATGCCTTCATATCCTTCTCCGCTTCCTCATTTATATCATTTCTTGAT
TCATCTATGTATTAATGTCGCATTCATCTACTCGTCTACGTTGTCCTGTA
CAATACAGGAAGCTGGTATCCCTTATACAGGACAACGAAGTGGCGGCAAA
CGTCCGTAACTACCTGTGCAACACTTTAGAGGACGAGTTTGCGCGGATCG
AAGCCGCGCACGACAGCACCCTTCGCTTGTTGGCGGATGACCTTGAAGTG
CGGACGGTCCTTCGAGAGACCCGTCAAAAATACTATCCTGCTTTGACAGC
CATGGCAGGCAAAGGTTGGGTTGACCATTGGCTGGGGAAGGTGTTCAAGT
AAGTGAGGGAGGGAGGTAGGGAGGTAGGGAGGGAGGGTCGTAAAGTGAGG
GAAGAGGGAGAGAAGGGGCCTTCCACGACAATCACGCTTGTCTGCTTGTC
AATCCGCCCTACAGAGATGCGTCGGGCTTCATAATTGAAAGCGAATCAAG
GAGGGGCGAGAAGGGCTGGTATTTCTTGAATCATCTTTTCGATGTCATGC
ATTTCATTCACCTCTCCTTTGTTTTCCTTATCATTCCCCCATGGCACAGG
AATGACCTCGTCGGAATCAAAACATTTAATGACCGTGTAACGTTTAAGGA
TCGCACGGGGATTAGCCACAGATCTTATAAAAACTGCTTGACGCCGTAAG
GATGCCTTTTTAGTGTGGGGGTAGAGACGAAGAGGCGCCACCATCCTTTA
CCCGTTCAACCCAAGTATCTCACAAAGTTTCATATGTGGTAATATTCTTC
ATTTACGTACCTTTACAGATTGGGGGCTAATATGAATCGGGAGATGTACT
TGATGGCGAAGATGCTCCTTGACAAGGGACATCCCATTGAGGAGGTGTAC
CATATCACTCGAAAGTCGATGCTTGCAGTCCAGAAGGGCTACAATTGTTG
CCGACGCCTGAAGAAAAGGGACAAGATGCGGATGATGACCCGTCCTGGCT
CCAGGAAGGTACGCTTTGCCTCTCACTGATATTAAAAGTCCAGAAAAGCG
GCTTTTTCTTTTTCCCCTAGCTATTGATATAGCACGTTCAAGAAAACCAT
CGTTGACGCGGAGAAACTTATACCTTGAATGCAATGATAGTCTGAATCCC
GGCTCTCTCCTTCTTCTTCCCTTCACAAAATACTCAATAGCGCCGACAGC
TGCAGCTTGCAAACGAGCCGACGAACGTGCGTCCTTGCACCCGCGCACTC
GCCTCCATGCGGCCCCCGGCTACCCCCATGATGCGCCCGGAAGAAAATCA
GTACGAGACGGAGGATGAGGAGTACAACTAAGACGTTTGTGGCCCGTGAG
TACAGAAGAGCACGAAAATGACACACGACGAGTCCAAAGGCAGACATGCA
AGAAACGATGAAAGGACGGGAGAATCAACGAGAACAACGGGGAGAGAAAA
GGGGCACATTCCAAGGAGAGAACCACAGACAGAGACAGAGAGAGACGGCG
AAGGCCATGCGGCATGAGGGGGCAAGAAAAAGAGCCAGCTTGCGCTACTC
GACTTTAGTACGCTGGTCTTTTCCTCGTTGCCTGCCATGTCTCAACGCCA
ACGCCCCATCCTGCACACACGCCACACACCACCCAAAACAAACACACATG
GATGGAAAACAAAGGGAAAGGGGGGATCCCCATCACGGTATTCACTTCAT
ACGACGTCATAGGAGGATAGAGCAACCTCCACATAAGGAGAAAGATAACA
AGCGCAAGATGCATACAA

Coding sequence (CDS) from alignment at scaffold_34:13490..15707+

>mRNA_9454 ID=mRNA_9454|Name=jgi.p|Nanoce1779_2|606038|organism=Nannochloropsis oceanica|type=CDS|length=4830bp|location=Sequence derived from alignment at scaffold_34:13490..15707+ (Nannochloropsis oceanica)
ATGAACACTGTCACCGATGAAAAGCCGCTTTCTCAGAAAGTAGTCAGAGA
ACTCTTTTTTGCTTATCGGTGGGAGATGAGAAACAGGGAATGCTGCATTC
CCGTAGACATCGTGGCTACGCATCTGGCCGTCCCTGTGGGGTTATTGCAG
TCCCTCATATCCGGCAACAATGGCTTCCATTGGTCCGATTACTGCAGCGG
AGGACCCAGTGAGATTCATTTAGAGTGTCCCAAGACAAAGCAGGTGCACC
TGTGCTGGAACAATGCCTCCCATCTCCTCCTCTCTTTCAAGGGCATGTTG
AAGCTGGTATCCCTTATACAGGACAACGAAGTGGCGGCAAACGTCCGTAA
CTACCTGTGCAACACTTTAGAGGACGAGTTTGCGCGGATCGAAGCCGCGC
ACGACAGCACCCTTCGCTTGTTGGCGGATGACCTTGAAGTGCGGACGGTC
CTTCGAGAGACCCGTCAAAAATACTATCCTGCTTTGACAGCCATGGCAGG
CAAAGGTTGGGTTGACCATTGGCTGGGGAAGGTGTTCAAGAATGACCTCG
TCGGAATCAAAACATTTAATGACCGTGTAACGTTTAAGGATCGCACGGGG
ATTAGCCACAGATCTTATAAAAACTGCTTGACGCCATTGGGGGCTAATAT
GAATCGGGAGATGTACTTGATGGCGAAGATGCTCCTTGACAAGGGACATC
CCATTGAGGAGGTGTACCATATCACTCGAAAGTCGATGCTTGCAGTCCAG
AAGGGCTACAATTGTTGCCGACGCCTGAAGAAAAGGGACAAGATGCGGAT
GATGACCCGTCCTGGCTCCAGGAAGCGCCGACAGCTGCAGCTTGCAAACG
AGCCGACGAACGTGCGTCCTTGCACCCGCGCACTCGCCTCCATGCGGCCC
CCGGCTACCCCCATGATGCGCCCGGAAGAAAATCAGTACGAGACGGAGGA
TGAGGAGTACAACTAAATGAACACTGTCACCGATGAAAAGCCGCTTTCTC
AGAAAGTAGTCAGAGAACTCTTTTTTGCTTATCGGTGGGAGATGAGAAAC
AGGGAATGCTGCATTCCCGTAGACATCGTGGCTACGCATCTGGCCGTCCC
TGTGGGGTTATTGCAGTCCCTCATATCCGGCAACAATGGCTTCCATTGGT
CCGATTACTGCAGCGGAGGACCCAGTGAGATTCATTTAGAGTGTCCCAAG
ACAAAGCAGGTGCACCTGTGCTGGAACAATGCCTCCCATCTCCTCCTCTC
TTTCAAGGGCATGTTGAAGCTGGTATCCCTTATACAGGACAACGAAGTGG
CGGCAAACGTCCGTAACTACCTGTGCAACACTTTAGAGGACGAGTTTGCG
CGGATCGAAGCCGCGCACGACAGCACCCTTCGCTTGTTGGCGGATGACCT
TGAAGTGCGGACGGTCCTTCGAGAGACCCGTCAAAAATACTATCCTGCTT
TGACAGCCATGGCAGGCAAAGGTTGGGTTGACCATTGGCTGGGGAAGGTG
TTCAAGAATGACCTCGTCGGAATCAAAACATTTAATGACCGTGTAACGTT
TAAGGATCGCACGGGGATTAGCCACAGATCTTATAAAAACTGCTTGACGC
CATTGGGGGCTAATATGAATCGGGAGATGTACTTGATGGCGAAGATGCTC
CTTGACAAGGGACATCCCATTGAGGAGGTGTACCATATCACTCGAAAGTC
GATGCTTGCAGTCCAGAAGGGCTACAATTGTTGCCGACGCCTGAAGAAAA
GGGACAAGATGCGGATGATGACCCGTCCTGGCTCCAGGAAGCGCCGACAG
CTGCAGCTTGCAAACGAGCCGACGAACGTGCGTCCTTGCACCCGCGCACT
CGCCTCCATGCGGCCCCCGGCTACCCCCATGATGCGCCCGGAAGAAAATC
AGTACGAGACGGAGGATGAGGAGTACAACTAAATGAACACTGTCACCGAT
GAAAAGCCGCTTTCTCAGAAAGTAGTCAGAGAACTCTTTTTTGCTTATCG
GTGGGAGATGAGAAACAGGGAATGCTGCATTCCCGTAGACATCGTGGCTA
CGCATCTGGCCGTCCCTGTGGGGTTATTGCAGTCCCTCATATCCGGCAAC
AATGGCTTCCATTGGTCCGATTACTGCAGCGGAGGACCCAGTGAGATTCA
TTTAGAGTGTCCCAAGACAAAGCAGGTGCACCTGTGCTGGAACAATGCCT
CCCATCTCCTCCTCTCTTTCAAGGGCATGTTGAAGCTGGTATCCCTTATA
CAGGACAACGAAGTGGCGGCAAACGTCCGTAACTACCTGTGCAACACTTT
AGAGGACGAGTTTGCGCGGATCGAAGCCGCGCACGACAGCACCCTTCGCT
TGTTGGCGGATGACCTTGAAGTGCGGACGGTCCTTCGAGAGACCCGTCAA
AAATACTATCCTGCTTTGACAGCCATGGCAGGCAAAGGTTGGGTTGACCA
TTGGCTGGGGAAGGTGTTCAAGAATGACCTCGTCGGAATCAAAACATTTA
ATGACCGTGTAACGTTTAAGGATCGCACGGGGATTAGCCACAGATCTTAT
AAAAACTGCTTGACGCCATTGGGGGCTAATATGAATCGGGAGATGTACTT
GATGGCGAAGATGCTCCTTGACAAGGGACATCCCATTGAGGAGGTGTACC
ATATCACTCGAAAGTCGATGCTTGCAGTCCAGAAGGGCTACAATTGTTGC
CGACGCCTGAAGAAAAGGGACAAGATGCGGATGATGACCCGTCCTGGCTC
CAGGAAGCGCCGACAGCTGCAGCTTGCAAACGAGCCGACGAACGTGCGTC
CTTGCACCCGCGCACTCGCCTCCATGCGGCCCCCGGCTACCCCCATGATG
CGCCCGGAAGAAAATCAGTACGAGACGGAGGATGAGGAGTACAACTAAAT
GAACACTGTCACCGATGAAAAGCCGCTTTCTCAGAAAGTAGTCAGAGAAC
TCTTTTTTGCTTATCGGTGGGAGATGAGAAACAGGGAATGCTGCATTCCC
GTAGACATCGTGGCTACGCATCTGGCCGTCCCTGTGGGGTTATTGCAGTC
CCTCATATCCGGCAACAATGGCTTCCATTGGTCCGATTACTGCAGCGGAG
GACCCAGTGAGATTCATTTAGAGTGTCCCAAGACAAAGCAGGTGCACCTG
TGCTGGAACAATGCCTCCCATCTCCTCCTCTCTTTCAAGGGCATGTTGAA
GCTGGTATCCCTTATACAGGACAACGAAGTGGCGGCAAACGTCCGTAACT
ACCTGTGCAACACTTTAGAGGACGAGTTTGCGCGGATCGAAGCCGCGCAC
GACAGCACCCTTCGCTTGTTGGCGGATGACCTTGAAGTGCGGACGGTCCT
TCGAGAGACCCGTCAAAAATACTATCCTGCTTTGACAGCCATGGCAGGCA
AAGGTTGGGTTGACCATTGGCTGGGGAAGGTGTTCAAGAATGACCTCGTC
GGAATCAAAACATTTAATGACCGTGTAACGTTTAAGGATCGCACGGGGAT
TAGCCACAGATCTTATAAAAACTGCTTGACGCCATTGGGGGCTAATATGA
ATCGGGAGATGTACTTGATGGCGAAGATGCTCCTTGACAAGGGACATCCC
ATTGAGGAGGTGTACCATATCACTCGAAAGTCGATGCTTGCAGTCCAGAA
GGGCTACAATTGTTGCCGACGCCTGAAGAAAAGGGACAAGATGCGGATGA
TGACCCGTCCTGGCTCCAGGAAGCGCCGACAGCTGCAGCTTGCAAACGAG
CCGACGAACGTGCGTCCTTGCACCCGCGCACTCGCCTCCATGCGGCCCCC
GGCTACCCCCATGATGCGCCCGGAAGAAAATCAGTACGAGACGGAGGATG
AGGAGTACAACTAAATGAACACTGTCACCGATGAAAAGCCGCTTTCTCAG
AAAGTAGTCAGAGAACTCTTTTTTGCTTATCGGTGGGAGATGAGAAACAG
GGAATGCTGCATTCCCGTAGACATCGTGGCTACGCATCTGGCCGTCCCTG
TGGGGTTATTGCAGTCCCTCATATCCGGCAACAATGGCTTCCATTGGTCC
GATTACTGCAGCGGAGGACCCAGTGAGATTCATTTAGAGTGTCCCAAGAC
AAAGCAGGTGCACCTGTGCTGGAACAATGCCTCCCATCTCCTCCTCTCTT
TCAAGGGCATGTTGAAGCTGGTATCCCTTATACAGGACAACGAAGTGGCG
GCAAACGTCCGTAACTACCTGTGCAACACTTTAGAGGACGAGTTTGCGCG
GATCGAAGCCGCGCACGACAGCACCCTTCGCTTGTTGGCGGATGACCTTG
AAGTGCGGACGGTCCTTCGAGAGACCCGTCAAAAATACTATCCTGCTTTG
ACAGCCATGGCAGGCAAAGGTTGGGTTGACCATTGGCTGGGGAAGGTGTT
CAAGAATGACCTCGTCGGAATCAAAACATTTAATGACCGTGTAACGTTTA
AGGATCGCACGGGGATTAGCCACAGATCTTATAAAAACTGCTTGACGCCA
TTGGGGGCTAATATGAATCGGGAGATGTACTTGATGGCGAAGATGCTCCT
TGACAAGGGACATCCCATTGAGGAGGTGTACCATATCACTCGAAAGTCGA
TGCTTGCAGTCCAGAAGGGCTACAATTGTTGCCGACGCCTGAAGAAAAGG
GACAAGATGCGGATGATGACCCGTCCTGGCTCCAGGAAGCGCCGACAGCT
GCAGCTTGCAAACGAGCCGACGAACGTGCGTCCTTGCACCCGCGCACTCG
CCTCCATGCGGCCCCCGGCTACCCCCATGATGCGCCCGGAAGAAAATCAG
TACGAGACGGAGGATGAGGAGTACAACTAA

Synonyms

Publications