jgi.p|Nanoce1779_2|546946, mRNA_9453 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|546946
Unique NamemRNA_9453
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1532
Alignment locationscaffold_34:9552..11503 +

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Properties
Property NameValue
TranscriptId547032
TrackFilteredModels2
ProteinId546946
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:9552..11503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546946gene_9453Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546946mRNA_9453-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9453CDS_9453Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9453 ID=mRNA_9453|Name=jgi.p|Nanoce1779_2|546946|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
ACGTGATGTAGAGATTGGCGTGTTGAAGCTTTTCTGAAGCTTTTCTGTTT
TGTCGTCCTTGTCTGGAAATGTTGAGCAAGAGGACGAGGAGGAGGTCGAC
GAGGGGGCCGAGAAGGAGGAAGAGGAGCGGGAGGAAGACTCAACATCTAG
TGTTACTTGCGTACAATCATCATGCTACCGCCCGCATCACTCAGTCTCAC
ACAACACACGCAATCAAATATTGCACAGGCTCTGGAACAACGCGGCGCCC
CAGCCTAACTTTAAGTTAGCAAAAGCAAAGCAGAGCCCAAATCGAGCGAC
TCCTCTGTTGGGGTTAAGCATCCCTCCCGTCCTTGCCTCCACCTGAAAGG
CCAGCTGCATCAAGCACCTACACCCGCGGTGTAGTTCACGTGGTGAGCAT
TGTTAAGTCTACCGTCCCTCTGTCTGCTCTCGCATCGCCACCCGTGCCGG
GGGTTTGCGTTGATAGACCCGTGCAGGACGACCATGATAATTAAAAGCCG
CCGCCCTCCCGCCCTGGCCTCCCATAATCCCTTCTTCTGGGCCTTATACT
TCCTCGCACTTACACATAACAGTATTTCCATCCACCTTTTTCTTCCATCC
CGCGCAATGCTGCACATGTGGGGCAATAGCTCTTTTTATCATAGTCCCCC
AGCCTCCCCCACCACCAACACCCACCACCACCCTATCTCCCTCCCTCCTT
TCCCCTTCACAGCACCCTGAGAACGACAGAAGAATGCATCTTGTCTGTTT
GATCACTTAACGAACCAAGAGTCTGACCCGTCTCTGATATCCTCGTCCCC
TCATAGGAAACGAAGCCACTCCCCCCGCTCCGTTCCTATAAGACACCAGC
AGCGCCACCTCTCACCATTTCTACCTTCTCAAGCAAACAAACAAACAAAC
AAACGGGAAGATGGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCGG
ATTTCGATCCCAACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCAG
ATCGAGACGCGGATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCGG
CGAGTTTATGTACCGAGGGAAGAAGTTCAATATGCGCAAAGAAGACGTGC
AAGGCGATACGTACAAGGGCATCAAGAAATTTCGCTTCTATATGAAGTGT
CTCACTTGCTCCCGGGAAATCACCTTTATCACCGACCCGGAAAAGATGGA
CTACGCTATGGAGGTGGGTGCGAAACGCCTCTTCGAAGTGTGGAAAGAGC
AAGAAAAGGCCGAGAAGGAGGGGGAGGAGAAGCGGGCCGTCGAGGAGCAG
CAAGACGCAATGAAGGCGCTCGAGCACAGGACGATTGACTCAAAATTAGA
GATGGACATACTGGATGCATTGGAAGAGACCAAGGCCTGGGGGAATAAGC
GGGACCTCATCCGGGGGGATCATCTGGTAGGGCTCTTTAACCAGCATGTA
GAAGGGGAGGAGGGAGGAGGGGGGGTAGAGAAGGAGGAGGAAGAGGAGGC
CCGCAAGGCGTTTGCGAGGGCCCGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|546946

>mRNA_9453-protein ID=mRNA_9453-protein|Name=jgi.p|Nanoce1779_2|546946|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MGERKVLNKYFPPDFDPNLVPRTKFNQFKQIETRMMLPFNIQCETCGEFM
YRGKKFNMRKEDVQGDTYKGIKKFRFYMKCLTCSREITFITDPEKMDYAM
EVGAKRLFEVWKEQEKAEKEGEEKRAVEEQQDAMKALEHRTIDSKLEMDI
LDALEETKAWGNKRDLIRGDHLVGLFNQHVEGEEGGGGVEKEEEEEARKA
FARARRE
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mRNA from alignment at scaffold_34:9552..11503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9453 ID=mRNA_9453|Name=jgi.p|Nanoce1779_2|546946|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at scaffold_34:9552..11503+ (Nannochloropsis oceanica)
ACGTGATGTAGAGATTGGCGTGTTGAAGCTTTTCTGAAGCTTTTCTGTTT
TGTCGTCCTTGTCTGGAAATGTTGAGCAAGAGGACGAGGAGGAGGTCGAC
GAGGGGGCCGAGAAGGAGGAAGAGGAGCGGGAGGAAGACTCAACATCTAG
TGTTACTTGCGTACAATCATCATGCTACCGCCCGCATCACTCAGTCTCAC
ACAACACACGCAATCAAATATTGCACAGGCTCTGGAACAACGCGGCGCCC
CAGCCTAACTTTAAGTTAGCAAAAGCAAAGCAGAGCCCAAATCGAGCGAC
TCCTCTGTTGGGGTTAAGCATCCCTCCCGTCCTTGCCTCCACCTGAAAGG
CCAGCTGCATCAAGCACCTACACCCGCGGTGTAGTTCACGTGGTGAGCAT
TGTTAAGTCTACCGTCCCTCTGTCTGCTCTCGCATCGCCACCCGTGCCGG
GGGTTTGCGTTGATAGACCCGTGCAGGACGACCATGATAATTAAAAGCCG
CCGCCCTCCCGCCCTGGCCTCCCATAATCCCTTCTTCTGGGCCTTATACT
TCCTCGCACTTACACATAACAGTATTTCCATCCACCTTTTTCTTCCATCC
CGCGCAATGCTGCACATGTGGGGCAATAGCTCTTTTTATCATAGTCCCCC
AGCCTCCCCCACCACCAACACCCACCACCACCCTATCTCCCTCCCTCCTT
TCCCCTTCACAGCACCCTGAGAACGACAGAAGAATGCATCTTGTCTGTTT
GATCACTTAACGAACCAAGAGTCTGACCCGTCTCTGATATCCTCGTCCCC
TCATAGGAAACGAAGCCACTCCCCCCGCTCCGTTCCTATAAGACACCAGC
AGCGCCACCTCTCACCATTTCTACCTTCTCAAGCAAACAAACAAACAAAC
AAACGGGAAGATGGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCGG
ATTTCGATCCCAACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCAG
ATCGAGACGCGGATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCGG
CGAGTTTATGTACCGAGGGAAGAAGTTCAATATGCGGTAGGTGTGGAGGG
AGGGAGGATAGGAGGGAGGGGGGGAAAGAGGGAAGGAGGGGGATGCGTTT
TTGGGTTCCCCTTCGCCGCCAACAGTGAGGCGCTTTACCGACTTGACCAC
CACCTTCTTTTCTCACTCCCTCTGTCTTCCCCTCTCCCTCTCTCTCTTTT
TCGTCGCTCGGGTGTTTCGCGTACCCATCCTCACTCTCACACACGCGCAC
AATCACACCCGTACGTCCCTCTCCAGCAAAGAAGACGTGCAAGGCGATAC
GTACAAGGGCATCAAGAAATTTCGCTTCTATATGAAGTGTCTCACTTGCT
CCCGGGAAATCACCTTTATCACCGACCCGGAAAAGATGGACTACGCTATG
GAGGTAAGGCTGCTGCATGTCTTTCCTCCCTCCCTCCCTCCCGCCCTCAC
TCACTCCCTGCTTCCCTCCCTTTTTCGTGGATATGAGACTGAAAAGGTAG
CAAGATGTAATAGAAGCATCAGATCGTCGAGTGATTGACCCCTCCCTCCC
TCCCTCCCTTCTCTCCTCCCCTTCTCACCCTAGGTGGGTGCGAAACGCCT
CTTCGAAGTGTGGAAAGAGCAAGAAAAGGCCGAGAAGGAGGGGGAGGAGA
AGCGGGCCGTCGAGGAGCAGCAAGACGCAATGAAGGCGCTCGAGCACAGG
ACGATTGACTCAAAATTAGAGATGGACATACTGGATGCATTGGAAGAGAC
CAAGGCCTGGGGGAATAAGCGGGACCTCATCCGGGGGGATCATCTGGTAG
GGCTCTTTAACCAGCATGTAGAAGGGGAGGAGGGAGGAGGGGGGGTAGAG
AAGGAGGAGGAAGAGGAGGCCCGCAAGGCGTTTGCGAGGGCCCGGAGGGA
GG
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Coding sequence (CDS) from alignment at scaffold_34:9552..11503+

>mRNA_9453 ID=mRNA_9453|Name=jgi.p|Nanoce1779_2|546946|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at scaffold_34:9552..11503+ (Nannochloropsis oceanica)
ATGGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCGGATTTCGATCC
CAACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCAGATCGAGACGC
GGATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCGGCGAGTTTATG
TACCGAGGGAAGAAGTTCAATATGCGCAAAGAAGACGTGCAAGGCGATAC
GTACAAGGGCATCAAGAAATTTCGCTTCTATATGAAGTGTCTCACTTGCT
CCCGGGAAATCACCTTTATCACCGACCCGGAAAAGATGGACTACGCTATG
GAGGTGGGTGCGAAACGCCTCTTCGAAGTGTGGAAAGAGCAAGAAAAGGC
CGAGAAGGAGGGGGAGGAGAAGCGGGCCGTCGAGGAGCAGCAAGACGCAA
TGAAGGCGCTCGAGCACAGGACGATTGACTCAAAATTAGAGATGGACATA
CTGGATGCATTGGAAGAGACCAAGGCCTGGGGGAATAAGCGGGACCTCAT
CCGGGGGGATCATCTGGTAGGGCTCTTTAACCAGCATGTAGAAGGGGAGG
AGGGAGGAGGGGGGGTAGAGAAGGAGGAGGAAGAGGAGGCCCGCAAGGCG
TTTGCGAGGGCCCGGAGGGAGATGGGCGAGCGCAAGGTCCTCAACAAGTA
CTTCCCCCCGGATTTCGATCCCAACCTGGTGCCACGGACGAAATTCAATC
AATTTAAGCAGATCGAGACGCGGATGATGCTGCCGTTTAACATCCAATGT
GAAACGTGCGGCGAGTTTATGTACCGAGGGAAGAAGTTCAATATGCGCAA
AGAAGACGTGCAAGGCGATACGTACAAGGGCATCAAGAAATTTCGCTTCT
ATATGAAGTGTCTCACTTGCTCCCGGGAAATCACCTTTATCACCGACCCG
GAAAAGATGGACTACGCTATGGAGGTGGGTGCGAAACGCCTCTTCGAAGT
GTGGAAAGAGCAAGAAAAGGCCGAGAAGGAGGGGGAGGAGAAGCGGGCCG
TCGAGGAGCAGCAAGACGCAATGAAGGCGCTCGAGCACAGGACGATTGAC
TCAAAATTAGAGATGGACATACTGGATGCATTGGAAGAGACCAAGGCCTG
GGGGAATAAGCGGGACCTCATCCGGGGGGATCATCTGGTAGGGCTCTTTA
ACCAGCATGTAGAAGGGGAGGAGGGAGGAGGGGGGGTAGAGAAGGAGGAG
GAAGAGGAGGCCCGCAAGGCGTTTGCGAGGGCCCGGAGGGAGATGGGCGA
GCGCAAGGTCCTCAACAAGTACTTCCCCCCGGATTTCGATCCCAACCTGG
TGCCACGGACGAAATTCAATCAATTTAAGCAGATCGAGACGCGGATGATG
CTGCCGTTTAACATCCAATGTGAAACGTGCGGCGAGTTTATGTACCGAGG
GAAGAAGTTCAATATGCGCAAAGAAGACGTGCAAGGCGATACGTACAAGG
GCATCAAGAAATTTCGCTTCTATATGAAGTGTCTCACTTGCTCCCGGGAA
ATCACCTTTATCACCGACCCGGAAAAGATGGACTACGCTATGGAGGTGGG
TGCGAAACGCCTCTTCGAAGTGTGGAAAGAGCAAGAAAAGGCCGAGAAGG
AGGGGGAGGAGAAGCGGGCCGTCGAGGAGCAGCAAGACGCAATGAAGGCG
CTCGAGCACAGGACGATTGACTCAAAATTAGAGATGGACATACTGGATGC
ATTGGAAGAGACCAAGGCCTGGGGGAATAAGCGGGACCTCATCCGGGGGG
ATCATCTGGTAGGGCTCTTTAACCAGCATGTAGAAGGGGAGGAGGGAGGA
GGGGGGGTAGAGAAGGAGGAGGAAGAGGAGGCCCGCAAGGCGTTTGCGAG
GGCCCGGAGGGAG
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Synonyms
Publications