jgi.p|Nanoce1779_2|633395, mRNA_9451 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633395
Unique Name	mRNA_9451
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1342
Alignment location	scaffold_34:5122..6463 +

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Properties


Property Name	Value
TranscriptId	633481
Track	FilteredModels2
ProteinId	633395

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:5122..6463 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633395	gene_9451	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633395	mRNA_9451-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9451	CDS_9451	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:5122..6463+
coding sequence from alignment at scaffold_34:5122..6463+

mRNA sequence

>mRNA_9451 ID=mRNA_9451|Name=jgi.p|Nanoce1779_2|633395|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
CCTGCTGATGTAGCCAGTGGTGGTGGCGGTGATGGTGGTAGAGAAGGAGC
AGCAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGCATGGTA
CCGCCAGCAGCATGACAGAAGGCACATGTGCGGCTAAAGCCCCTTTCATA
TCTTCTCCAAACGATTCCTCACCCTCTTCCTTCCCGTCTTTCTCCTCCTC
CACCATCCACCCTTTCCCCTCCTCTTTTATCTCCTCCTCCCCCTCCTCCT
CATCCTCTTCCTCCTCTGCTTCTGATGCTCTCGGGGACGCAGCTGTGACA
GCGGTCCTTACCCCTCCCTACCTCGCCACTAATTCGGCCTCTCCCTCCCT
CTTCTCTACCTGCTCCTCCATTGCTTCCACCTCTCTTCCCCGTCTTTCGT
CCGTGAACAGCAGCAGCAGCGGCAACAGCCGCATGAAACATAACGGGACA
ACAGCTGCAACAGCTGCAACAGCAGCAACAGCAGCAACAGCTACACTAGC
CCCAGCACTACCAGCACCAGCACCGGCCGTTGGGACAGCCGAAAAGAAGA
AACCGTCCACAGCCGTTACGAGGGAGGAATTTATCATCTCCATGATGCTT
CTCCTGGGGCGCGTGGATATGATGCACGTCCGCGAAGCCCAGAGGGTTTT
CGATCACCTCGACAAGGACAAAACGGGTATCTTAAATGAGACAGACGTTG
TCAAGAAGGTGGAGCAACAGACGGGCCTGAGGTATGACTCAGCGCGCTAT
CGCATGGGACACGGTGCCAAGGACAGTAAAAAATATGCGTCGCCCAGACG
CCTGGCAGCCTTGAAGAAGGGGGGAGAGGGAGGGGGAACGATGGGTGCGG
CGGGTAGTAGCAGCAGCAGCAACATGCTTGGGACGTCACCGATTAAACCG
AAAGAAGGAGGATGGGGAGAAGTAGGAGGAGGCAGAGAAGGAGGGGATGA
GGGCAGGTTGCACTCGTTATCTTCTGTCTCTGCGCCCTCTTCCTCGACCT
CGCCTTGGCGGTGGCGGCAGCAAAAGCAACAGCAGCCGCAGCAGCAGCCG
CAGCAGCAGCAGCAGCCGCCGCAGGGAGGGGGAGGGGAAGGGGGGGAAGA
ATATAAGAAAGGGTAGAGCAGAACATGGAATGTGCTAGGGTGTGTGGTAG
GAAAAGTAAAGGGAATGGAGGAGAGGAAGGTATCTCCTCTCTGCGTGTAC
GTAGATCCTGAGTGATCAAGGTACACATATTATGTATATGACACGTCAAC
TTAAAACAATTAACATAGCCCCATCAGAGACACCACGATGTCGACAAAGC
GATGATGCGAATAAAGAAAGAAAACCAACCATGAGTCTTTGC

protein sequence of jgi.p|Nanoce1779_2|633395

>mRNA_9451-protein ID=mRNA_9451-protein|Name=jgi.p|Nanoce1779_2|633395|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MTEGTCAAKAPFISSPNDSSPSSFPSFSSSTIHPFPSSFISSSPSSSSSS
SSASDALGDAAVTAVLTPPYLATNSASPSLFSTCSSIASTSLPRLSSVNS
SSSGNSRMKHNGTTAATAATAATAATATLAPALPAPAPAVGTAEKKKPST
AVTREEFIISMMLLLGRVDMMHVREAQRVFDHLDKDKTGILNETDVVKKV
EQQTGLRYDSARYRMGHGAKDSKKYASPRRLAALKKGGEGGGTMGAAGSS
SSSNMLGTSPIKPKEGGWGEVGGGREGGDEGRLHSLSSVSAPSSSTSPWR
WRQQKQQQPQQQPQQQQQPPQGGGGEGGEEYKKG*

mRNA from alignment at scaffold_34:5122..6463+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9451 ID=mRNA_9451|Name=jgi.p|Nanoce1779_2|633395|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp|location=Sequence derived from alignment at scaffold_34:5122..6463+ (Nannochloropsis oceanica)
CCTGCTGATGTAGCCAGTGGTGGTGGCGGTGATGGTGGTAGAGAAGGAGC
AGCAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGCATGGTA
CCGCCAGCAGCATGACAGAAGGCACATGTGCGGCTAAAGCCCCTTTCATA
TCTTCTCCAAACGATTCCTCACCCTCTTCCTTCCCGTCTTTCTCCTCCTC
CACCATCCACCCTTTCCCCTCCTCTTTTATCTCCTCCTCCCCCTCCTCCT
CATCCTCTTCCTCCTCTGCTTCTGATGCTCTCGGGGACGCAGCTGTGACA
GCGGTCCTTACCCCTCCCTACCTCGCCACTAATTCGGCCTCTCCCTCCCT
CTTCTCTACCTGCTCCTCCATTGCTTCCACCTCTCTTCCCCGTCTTTCGT
CCGTGAACAGCAGCAGCAGCGGCAACAGCCGCATGAAACATAACGGGACA
ACAGCTGCAACAGCTGCAACAGCAGCAACAGCAGCAACAGCTACACTAGC
CCCAGCACTACCAGCACCAGCACCGGCCGTTGGGACAGCCGAAAAGAAGA
AACCGTCCACAGCCGTTACGAGGGAGGAATTTATCATCTCCATGATGCTT
CTCCTGGGGCGCGTGGATATGATGCACGTCCGCGAAGCCCAGAGGGTTTT
CGATCACCTCGACAAGGACAAAACGGGTATCTTAAATGAGACAGACGTTG
TCAAGAAGGTGGAGCAACAGACGGGCCTGAGGTATGACTCAGCGCGCTAT
CGCATGGGACACGGTGCCAAGGACAGTAAAAAATATGCGTCGCCCAGACG
CCTGGCAGCCTTGAAGAAGGGGGGAGAGGGAGGGGGAACGATGGGTGCGG
CGGGTAGTAGCAGCAGCAGCAACATGCTTGGGACGTCACCGATTAAACCG
AAAGAAGGAGGATGGGGAGAAGTAGGAGGAGGCAGAGAAGGAGGGGATGA
GGGCAGGTTGCACTCGTTATCTTCTGTCTCTGCGCCCTCTTCCTCGACCT
CGCCTTGGCGGTGGCGGCAGCAAAAGCAACAGCAGCCGCAGCAGCAGCCG
CAGCAGCAGCAGCAGCCGCCGCAGGGAGGGGGAGGGGAAGGGGGGGAAGA
ATATAAGAAAGGGTAGAGCAGAACATGGAATGTGCTAGGGTGTGTGGTAG
GAAAAGTAAAGGGAATGGAGGAGAGGAAGGTATCTCCTCTCTGCGTGTAC
GTAGATCCTGAGTGATCAAGGTACACATATTATGTATATGACACGTCAAC
TTAAAACAATTAACATAGCCCCATCAGAGACACCACGATGTCGACAAAGC
GATGATGCGAATAAAGAAAGAAAACCAACCATGAGTCTTTGC

Coding sequence (CDS) from alignment at scaffold_34:5122..6463+

>mRNA_9451 ID=mRNA_9451|Name=jgi.p|Nanoce1779_2|633395|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at scaffold_34:5122..6463+ (Nannochloropsis oceanica)
ATGACAGAAGGCACATGTGCGGCTAAAGCCCCTTTCATATCTTCTCCAAA
CGATTCCTCACCCTCTTCCTTCCCGTCTTTCTCCTCCTCCACCATCCACC
CTTTCCCCTCCTCTTTTATCTCCTCCTCCCCCTCCTCCTCATCCTCTTCC
TCCTCTGCTTCTGATGCTCTCGGGGACGCAGCTGTGACAGCGGTCCTTAC
CCCTCCCTACCTCGCCACTAATTCGGCCTCTCCCTCCCTCTTCTCTACCT
GCTCCTCCATTGCTTCCACCTCTCTTCCCCGTCTTTCGTCCGTGAACAGC
AGCAGCAGCGGCAACAGCCGCATGAAACATAACGGGACAACAGCTGCAAC
AGCTGCAACAGCAGCAACAGCAGCAACAGCTACACTAGCCCCAGCACTAC
CAGCACCAGCACCGGCCGTTGGGACAGCCGAAAAGAAGAAACCGTCCACA
GCCGTTACGAGGGAGGAATTTATCATCTCCATGATGCTTCTCCTGGGGCG
CGTGGATATGATGCACGTCCGCGAAGCCCAGAGGGTTTTCGATCACCTCG
ACAAGGACAAAACGGGTATCTTAAATGAGACAGACGTTGTCAAGAAGGTG
GAGCAACAGACGGGCCTGAGGTATGACTCAGCGCGCTATCGCATGGGACA
CGGTGCCAAGGACAGTAAAAAATATGCGTCGCCCAGACGCCTGGCAGCCT
TGAAGAAGGGGGGAGAGGGAGGGGGAACGATGGGTGCGGCGGGTAGTAGC
AGCAGCAGCAACATGCTTGGGACGTCACCGATTAAACCGAAAGAAGGAGG
ATGGGGAGAAGTAGGAGGAGGCAGAGAAGGAGGGGATGAGGGCAGGTTGC
ACTCGTTATCTTCTGTCTCTGCGCCCTCTTCCTCGACCTCGCCTTGGCGG
TGGCGGCAGCAAAAGCAACAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCA
GCAGCCGCCGCAGGGAGGGGGAGGGGAAGGGGGGGAAGAATATAAGAAAG
GGTAG

Synonyms

Publications