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Properties
| Property Name | Value |
|---|
| TranscriptId | 606108 |
| Track | FilteredModels2 |
| ProteinId | 606022 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_34 | supercontig | scaffold_34:2412..4903 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9450 ID=mRNA_9450|Name=jgi.p|Nanoce1779_2|606022|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp
AGAACGCTCCTACTTGTCCTTTGCCGTGCTTTGTCCGGTGGCGACACCGG
TGGTTAAAGGCGGGGTGAGGCAAGCAGCATAGGACCATCGTGCTGGGTCG
TAGCTGTCAAGCAAGACATCAGGGCACCATTCGCCGTACACTCGCCTCTC
CTACGCGGCCGCGGTGAAGGTCGCCAGTCAGGGATCGCTTCTTTGCTAGG
ATATCCGATTATTTTTTTCATTAAGACGCAGGGAGGGTCATATACTCATT
ATCAGTGCCCTCAAGAAAATGAATATCACCCGTCGGACAACCTCCTTTCC
GGACCCGCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCG
ATGATGGGTTTCAATACGACTATCATTATGATGAGGATGAGGGTGAGGAG
GAGGGGGAGGGTGTTTGCTGCTGTAGGGAGGGTTGCTTGTGTGGGTTATG
TGGTCCTGGAGGAAGGGGGGGAAGGCCTTTCCGATGGCTGCGGCGGGCGG
GGAGGAAGACTTGGAGATTCTTCGATAACCATCGACGGGCTTGTTTGGGT
TTGACACAATTAAACCCTTCCTCTGATGACGAAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGATTATTATTTGGAAGAGGAAGGGGAGGAGGGAG
GGTTGGCCCCTGCTGGTGGTGCGCGACGCAGAAACCGAGGGGGGGCAACA
AGGAGGGGGAGGAAAAGGAGGGGGAGGACGGGAAGTAAGAGCTTGAGGGA
TACCCCGTCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCACCATCT
CAGTCGAGTACTTGAAGAGGAGGGATCGACGTCCTCTGCACATGGCCTGG
GCCTTTTTTTTCGTCTACGTGATAGCGGGCGTTTGGTACTTCATGTGGTT
CAAGTCCCTGGACTTCCACAATGCCCTTTCCAGATCATTAACAGTTTGAG
CGCTGTGGGGGTAAGGGGTCCTATATGTATTTAATATGTCATCTTCTTTG
TTTTTTAATTACCCCATCGGTGGCCGACGATATTCATGTGTTTCCCTCCC
CCATTTTTCCTTTGCTCCATTCTTTGCCTCCCTTTTGTCCTTGAGTACGG
AGATTTTAGTCCCACCACGCCGACTGAGCAGGCCCTCACCATCGTCTTCC
TCTTTGTTGGCGTGGGCTTTATGGGCTCTCTGATCGGTATTGTGGCCTCC
TCCCGCTTGGACTACCAAGAGGACGTCAAGATAGAATGGCTCGCCCGACA
GGAGGAGGGGCAGACGGGGAGGACAGGCGAGGGAGGGGAGACGGAAGTAG
TGGAAGAGCCGGGCGTGAGCTTGATGAGTGCGCAGATGAGGAGGGCGCGG
CAACGGGTGATATGGAACATAGGGAGGATGCTGCTGGCCATTGCGGTGGG
GACGGTGGTGCTGGTGCCCGTGGAGGGATGGACGTGGGGCTACGGCGTGT
TCTTTTCCTCGCAGATGATCATGGGCAGCGGGTGGGTCGACGTCATGCCC
ATCTCTGAGTTTGGGGTCTGGTTCTCGCTTTTCTATGCGTTGATGGGCAG
TATCTTAATTTACCATGCTTTGGGAGACTTGGCCTCCATCCCTCTGACCC
TGCGTCAAAGTCTGTTTGAGGCAGAGGTGCTGTCGCAGTGGGGAGACCAT
CTAACGGAGGATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAATCAC
AGCCGCGGCCATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCCCGG
CGAAGATGGGAGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAGCCG
TTGTTGTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC back to topprotein sequence of jgi.p|Nanoce1779_2|606022 >mRNA_9450-protein ID=mRNA_9450-protein|Name=jgi.p|Nanoce1779_2|606022|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MNITRRTTSFPDPHINTQHLEGVDEEGDDGFQYDYHYDEDEGEEEGEGVC
CCREGCLCGLCGPGGRGGRPFRWLRRAGRKTWRFFDNHRRACLGLTQLNP
SSDDEEEEEEEEEEEEDYYLEEEGEEGGLAPAGGARRRNRGGATRRGRKR
RGRTGSKSLRDTPSTSSFRALHRSSTISVEYLKRRDRRPLHMAWAFFFVY
VIAGVWYFMWFKSLDFHNALSRSLTV* back to topmRNA from alignment at scaffold_34:2412..4903+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9450 ID=mRNA_9450|Name=jgi.p|Nanoce1779_2|606022|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp|location=Sequence derived from alignment at scaffold_34:2412..4903+ (Nannochloropsis oceanica)
AGAACGCTCCTACTTGTCCTTTGCCGTGCTTTGTCCGGTGGCGACACCGG
TGGTTAAAGGCGGGGTGAGGCAAGCAGCATAGGACCATCGTGCTGGGTCG
TAGCTGTCAAGCAAGACATCAGGGCACCATTCGCCGTACACTCGCCTCTC
CTACGCGGCCGCGGTGAAGGTCGCCAGTCAGGGATCGCTTCTTTGCTAGG
ATATCCGATTATTTTTTTCATTAAGACGCAGGGAGGGTCATATACTCATT
ATCAGTGCCCTCAAGAAAATGAATATCACCCGTCGGACAACCTCCTTTCC
GGACCCGCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCG
GTGATGCTGCTACTAATGGAAACCGGTCCCAGAACCTCCCTCTTTCAGGC
GAGCCGCAGCAGCACGCGGGAGGCAAAGGCCGTCGGCAACCGGCGGCGTC
CTCGTCGTGACATCGACAACGTCGGTCATGGGCATACCACGAAGATGATG
GGTTTCAATACGACTATCATTATGATGAGGATGAGGGTGAGGAGGAGGGG
GAGGGTGTTTGCTGCTGTAGGGAGGGTTGCTGTGAGTCGTTTCTTTTTTT
CCGGTGCGCAGTGTGTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGGC
CTTTCCGATGGCTGCGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGAT
AACCATCGACGGGCTTGTTTGGGTTTGACACAATTAAACCCTTCCTCTGA
TGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTATT
TGGAAGAGGAAGGGGAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGA
CGCAGAAACCGAGGGGGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGAG
GACGGGAAGTAAGGTTCTCGGGAGGCTCGTACCAGAGCTTGAGGGATACC
CCGTCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGT
CGAGTACTTGAAGAGGAGGGATCGACGGTGCGTCCTCCCTCCCTCCCTCC
CTTCTTCAATCCTTCTTTCTCTTTATCGTAATCTCACCTCCTTCCTCATC
TTTTCTAATGTCCGTTGCTTATTATGATTATGACGCTTTGCTTACTTAAA
CATGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TCCTGCAGTCCTCTGCACATGGCCTGGGCCTTTTTTTTCGTCTACGTGAT
AGCGGGCGTTTGGTACTTCATGTGGTTCAAGTCCCTGGACTTCCACAATG
CCCTTTCCAGATCATTAACAGTTTGAGCGCTGTGGGGGTAAGGGGTCCTA
TATGTATTTAATATGTCATCTTCTTTGTTTTTTAATTACCCCATCGGTGG
CCGACGATATTCATGTGTTTCCCTCCCCCATTTTTCCTTTGCTCCATTCT
TTGCCTCCCTTTTGTCCTTGAGTACGGAGATTTTAGTCCCACCACGCCGA
CTGAGCAGGCCCTCACCATCGTCTTCCTCTTTGTTGGCGTGGGCTTTATG
GGCTCTCTGATCGGTATTGTGGCCTCCTCCCGCTTGGACTACCAAGAGGA
CGTCAAGATAGAATGGCTCGCCCGACAGGAGGAGGGGCAGACGGGGAGGA
CAGGCGAGGGAGGGGAGACGGAAGTAGTGGAAGAGCCGGGCGTGAGCTTG
ATGAGTGCGCAGATGAGGAGGGCGCGGCAACGGGTGATATGGAACATAGG
GAGGATGCTGCTGGCCATTGCGGTGGGGACGGTGGTGCTGGTGCCCGTGG
AGGGATGGACGTGGGGGTGAGTCCAGGGAGGAAGGAAAGAAGTGCGACAC
AAAGGGCAAAACCCCACTCAACCCTCCTCCTTCTCTTCCCCCCTCCTTCC
CTCCCTCCTTCCCTCCCTCCCTCCCTCCAGCTACGGCGTGTTCTTTTCCT
CGCAGATGATCATGGGCAGCGGGTGGGTCGACGTCATGCCCATCTCTGAG
TTTGGGGTCTGGTTCTCGCTTTTCTATGCGTTGATGGGCAGTATCTTAAT
TTACCATGCTTTGGGAGACTTGGCCTCCATCCCTCTGACCCTGCGTCAAA
GTCTGTTTGAGGCAGAGGTGCTGTCGCAGTGGGGAGACCATCTAACGGGT
GCGTATATTGAGTCCATGCCCGCCTATCTTTCGCCCTTCCTGTCGACTTG
TCTCTCTCAAAACCCTCCTCTTCACTCCTACTGCTTGCTTACCCCTTTTT
CGTCATTCCTTCCTTCCCTCCTTCCCTTCCACCCTCCCTCCCACCCTCCC
GGCGCTCAGAGGATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAATC
ACAGCCGCGGCCATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCCC
GGCGAAGATGGGAGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAGC
CGTTGTTGTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC back to topCoding sequence (CDS) from alignment at scaffold_34:2412..4903+ >mRNA_9450 ID=mRNA_9450|Name=jgi.p|Nanoce1779_2|606022|organism=Nannochloropsis oceanica|type=CDS|length=3405bp|location=Sequence derived from alignment at scaffold_34:2412..4903+ (Nannochloropsis oceanica)
ATGAATATCACCCGTCGGACAACCTCCTTTCCGGACCCGCACATTAACAC
GCAGCACTTGGAAGGGGTTGATGAGGAAGGCGATGATGGGTTTCAATACG
ACTATCATTATGATGAGGATGAGGGTGAGGAGGAGGGGGAGGGTGTTTGC
TGCTGTAGGGAGGGTTGCTTGTGTGGGTTATGTGGTCCTGGAGGAAGGGG
GGGAAGGCCTTTCCGATGGCTGCGGCGGGCGGGGAGGAAGACTTGGAGAT
TCTTCGATAACCATCGACGGGCTTGTTTGGGTTTGACACAATTAAACCCT
TCCTCTGATGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
TTATTATTTGGAAGAGGAAGGGGAGGAGGGAGGGTTGGCCCCTGCTGGTG
GTGCGCGACGCAGAAACCGAGGGGGGGCAACAAGGAGGGGGAGGAAAAGG
AGGGGGAGGACGGGAAGTAAGAGCTTGAGGGATACCCCGTCAACGAGTTC
GTTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGTCGAGTACTTGAAGA
GGAGGGATCGACGTCCTCTGCACATGGCCTGGGCCTTTTTTTTCGTCTAC
GTGATAGCGGGCGTTTGGTACTTCATGTGGTTCAAGTCCCTGGACTTCCA
CAATGCCCTTTCCAGATCATTAACAGTTTGAATGAATATCACCCGTCGGA
CAACCTCCTTTCCGGACCCGCACATTAACACGCAGCACTTGGAAGGGGTT
GATGAGGAAGGCGATGATGGGTTTCAATACGACTATCATTATGATGAGGA
TGAGGGTGAGGAGGAGGGGGAGGGTGTTTGCTGCTGTAGGGAGGGTTGCT
TGTGTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGGCCTTTCCGATGG
CTGCGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGATAACCATCGACG
GGCTTGTTTGGGTTTGACACAATTAAACCCTTCCTCTGATGACGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTATTTGGAAGAGGAA
GGGGAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGACGCAGAAACCG
AGGGGGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGAGGACGGGAAGTA
AGAGCTTGAGGGATACCCCGTCAACGAGTTCGTTCCGGGCGTTGCACCGG
TCTTCCACCATCTCAGTCGAGTACTTGAAGAGGAGGGATCGACGTCCTCT
GCACATGGCCTGGGCCTTTTTTTTCGTCTACGTGATAGCGGGCGTTTGGT
ACTTCATGTGGTTCAAGTCCCTGGACTTCCACAATGCCCTTTCCAGATCA
TTAACAGTTTGAATGAATATCACCCGTCGGACAACCTCCTTTCCGGACCC
GCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGGAAGGCGATGATG
GGTTTCAATACGACTATCATTATGATGAGGATGAGGGTGAGGAGGAGGGG
GAGGGTGTTTGCTGCTGTAGGGAGGGTTGCTTGTGTGGGTTATGTGGTCC
TGGAGGAAGGGGGGGAAGGCCTTTCCGATGGCTGCGGCGGGCGGGGAGGA
AGACTTGGAGATTCTTCGATAACCATCGACGGGCTTGTTTGGGTTTGACA
CAATTAAACCCTTCCTCTGATGACGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGATTATTATTTGGAAGAGGAAGGGGAGGAGGGAGGGTTGG
CCCCTGCTGGTGGTGCGCGACGCAGAAACCGAGGGGGGGCAACAAGGAGG
GGGAGGAAAAGGAGGGGGAGGACGGGAAGTAAGAGCTTGAGGGATACCCC
GTCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCACCATCTCAGTCG
AGTACTTGAAGAGGAGGGATCGACGTCCTCTGCACATGGCCTGGGCCTTT
TTTTTCGTCTACGTGATAGCGGGCGTTTGGTACTTCATGTGGTTCAAGTC
CCTGGACTTCCACAATGCCCTTTCCAGATCATTAACAGTTTGAATGAATA
TCACCCGTCGGACAACCTCCTTTCCGGACCCGCACATTAACACGCAGCAC
TTGGAAGGGGTTGATGAGGAAGGCGATGATGGGTTTCAATACGACTATCA
TTATGATGAGGATGAGGGTGAGGAGGAGGGGGAGGGTGTTTGCTGCTGTA
GGGAGGGTTGCTTGTGTGGGTTATGTGGTCCTGGAGGAAGGGGGGGAAGG
CCTTTCCGATGGCTGCGGCGGGCGGGGAGGAAGACTTGGAGATTCTTCGA
TAACCATCGACGGGCTTGTTTGGGTTTGACACAATTAAACCCTTCCTCTG
ATGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTATTAT
TTGGAAGAGGAAGGGGAGGAGGGAGGGTTGGCCCCTGCTGGTGGTGCGCG
ACGCAGAAACCGAGGGGGGGCAACAAGGAGGGGGAGGAAAAGGAGGGGGA
GGACGGGAAGTAAGAGCTTGAGGGATACCCCGTCAACGAGTTCGTTCCGG
GCGTTGCACCGGTCTTCCACCATCTCAGTCGAGTACTTGAAGAGGAGGGA
TCGACGTCCTCTGCACATGGCCTGGGCCTTTTTTTTCGTCTACGTGATAG
CGGGCGTTTGGTACTTCATGTGGTTCAAGTCCCTGGACTTCCACAATGCC
CTTTCCAGATCATTAACAGTTTGAATGAATATCACCCGTCGGACAACCTC
CTTTCCGGACCCGCACATTAACACGCAGCACTTGGAAGGGGTTGATGAGG
AAGGCGATGATGGGTTTCAATACGACTATCATTATGATGAGGATGAGGGT
GAGGAGGAGGGGGAGGGTGTTTGCTGCTGTAGGGAGGGTTGCTTGTGTGG
GTTATGTGGTCCTGGAGGAAGGGGGGGAAGGCCTTTCCGATGGCTGCGGC
GGGCGGGGAGGAAGACTTGGAGATTCTTCGATAACCATCGACGGGCTTGT
TTGGGTTTGACACAATTAAACCCTTCCTCTGATGACGAAGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGATTATTATTTGGAAGAGGAAGGGGAGG
AGGGAGGGTTGGCCCCTGCTGGTGGTGCGCGACGCAGAAACCGAGGGGGG
GCAACAAGGAGGGGGAGGAAAAGGAGGGGGAGGACGGGAAGTAAGAGCTT
GAGGGATACCCCGTCAACGAGTTCGTTCCGGGCGTTGCACCGGTCTTCCA
CCATCTCAGTCGAGTACTTGAAGAGGAGGGATCGACGTCCTCTGCACATG
GCCTGGGCCTTTTTTTTCGTCTACGTGATAGCGGGCGTTTGGTACTTCAT
GTGGTTCAAGTCCCTGGACTTCCACAATGCCCTTTCCAGATCATTAACAG
TTTGA back to top
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