jgi.p|Nanoce1779_2|147199, mRNA_945 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|147199
Unique NamemRNA_945
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length703
Alignment locationscaffold_2:821492..822462 -

Link to JBrowse

Properties
Property NameValue
TranscriptId147285
TrackFilteredModels2
ProteinId147199
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:821492..822462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|147199gene_945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|147199mRNA_945-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_945CDS_945Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_945 ID=mRNA_945|Name=jgi.p|Nanoce1779_2|147199|organism=Nannochloropsis oceanica|type=mRNA|length=703bp
ACTGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACC
TCACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCAC
CAGAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCA
AATCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTA
ACCCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCC
TCAACTCTTTCTGCAGGCCAAGATCAACAACAAGGTCGACTTGGAGAGTC
CGAAGGTGGTGACCATGGTAGAGATGAAACCTGGAGAGAAGAAGGTGTTC
TGCCGCTGCTGGCAAAGTGGAACATTCCCCTTATGCGACGGCGCGCACAT
GAAGCACAATGAAGCTACGGGGGACAACATCGGTCCTCTCATTGTTTCCA
CGCCGAAGCCATCCAACTAAACATGAGCGTACAAGAGGGCAAAAGGACGA
GTTGAATAGCCAACAGGAAGTGGACATTGTAGGAAGTTACACGGGGAAAG
TGAGACATGAATGACTGAAGAATGGAGGAAAATCGAATGAAAACCACGAT
ATGCGATCAATTACAATTCGTCCATTGTAATTTGTGTCACGCAAGCCGAA
ATCTCCCTACCCTCAAAAATAATCTCCACGACTCCCTTTTGTTCGCGTGG
CTT
back to top

protein sequence of jgi.p|Nanoce1779_2|147199

>mRNA_945-protein ID=mRNA_945-protein|Name=jgi.p|Nanoce1779_2|147199|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MPIIMCTRSSDLVTPPKSFPLPPKSRKMNSMRYVLSTVLVTLFVASDAFM
VPKTSRPQLFLQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFP
LCDGAHMKHNEATGDNIGPLIVSTPKPSN*
back to top

mRNA from alignment at scaffold_2:821492..822462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_945 ID=mRNA_945|Name=jgi.p|Nanoce1779_2|147199|organism=Nannochloropsis oceanica|type=mRNA|length=971bp|location=Sequence derived from alignment at scaffold_2:821492..822462- (Nannochloropsis oceanica)
ACTGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACC
TCACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCAC
CAGAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCA
AATCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTA
ACCCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCC
TCAACTCTTTCTGCAGGTATGTCGGTGGAAGTGAGGCGCCTATGTATGTC
TCCTGCGTCTTGTCCAAGTTTAGAAACTGAGTGTATGAGTCTAGACAGCG
CGCTTGTGCGGGGTTATCTTAAGGGCGTCTTTGCCCACTGCCGCATCCCG
TCGTTGAGCTCGACTCCTCTCCCACATTTCCTTTGTCAGGCCAAGATCAA
CAACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGA
AACCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGGTAGGTAGTATGAGTA
GGACATGGGGCTGCGGATGGACCACGAGCATGTTACGAATGTGCGGCGGC
TCATACTCTGTTCGAATTACAAATAACAGGCAAAGTGGAACATTCCCCTT
ATGCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACATCG
GTCCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAACATGAGCGTAC
AAGAGGGCAAAAGGACGAGTTGAATAGCCAACAGGAAGTGGACATTGTAG
GAAGTTACACGGGGAAAGTGAGACATGAATGACTGAAGAATGGAGGAAAA
TCGAATGAAAACCACGATATGCGATCAATTACAATTCGTCCATTGTAATT
TGTGTCACGCAAGCCGAAATCTCCCTACCCTCAAAAATAATCTCCACGAC
TCCCTTTTGTTCGCGTGGCTT
back to top

Coding sequence (CDS) from alignment at scaffold_2:821492..822462-

>mRNA_945 ID=mRNA_945|Name=jgi.p|Nanoce1779_2|147199|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_2:821492..822462- (Nannochloropsis oceanica)
GCAAAGTGGAACATTCCCCTTATGCGACGGCGCGCACATGAAGCACAATG
AAGCTACGGGGGACAACATCGGTCCTCTCATTGTTTCCACGCCGAAGCCA
TCCAACTAAGCCAAGATCAACAACAAGGTCGACTTGGAGAGTCCGAAGGT
GGTGACCATGGTAGAGATGAAACCTGGAGAGAAGAAGGTGTTCTGCCGCT
GCTGATGCCCATCATCATGTGCACCAGAAGTAGCGATTTAGTCACCCCCC
CCAAATCTTTCCCCCTTCCCCCCAAATCCCGCAAGATGAACAGCATGAGA
TATGTCCTGAGCACTGTCCTTGTAACCCTCTTCGTCGCCTCCGACGCTTT
TATGGTGCCCAAAACAAGCCGCCCTCAACTCTTTCTGCAGGCAAAGTGGA
ACATTCCCCTTATGCGACGGCGCGCACATGAAGCACAATGAAGCTACGGG
GGACAACATCGGTCCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAG
CCAAGATCAACAACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATG
GTAGAGATGAAACCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGATGCCC
ATCATCATGTGCACCAGAAGTAGCGATTTAGTCACCCCCCCCAAATCTTT
CCCCCTTCCCCCCAAATCCCGCAAGATGAACAGCATGAGATATGTCCTGA
GCACTGTCCTTGTAACCCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCC
AAAACAAGCCGCCCTCAACTCTTTCTGCAGGCAAAGTGGAACATTCCCCT
TATGCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACATC
GGTCCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAGCCAAGATCAA
CAACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGA
AACCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGATGCCCATCATCATGT
GCACCAGAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCC
CCCAAATCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCT
TGTAACCCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCC
GCCCTCAACTCTTTCTGCAG
back to top
Synonyms
Publications