jgi.p|Nanoce1779_2|606021, mRNA_9449 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606021
Unique NamemRNA_9449
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length979
Alignment locationscaffold_34:921..2181 +

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Properties
Property NameValue
TranscriptId606107
TrackFilteredModels2
ProteinId606021
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:921..2181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606021gene_9449Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606021mRNA_9449-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9449CDS_9449Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9449 ID=mRNA_9449|Name=jgi.p|Nanoce1779_2|606021|organism=Nannochloropsis oceanica|type=mRNA|length=979bp
AGGGAGGGATGGAGGGAGGGAGGGAGGGAGGGAGGGTATGGAGGGAGTGT
CACCTGACAGCTCCTGTATATTTGTGGGAACATCTCTCCCGCTCCCTCCT
TCCCTCCTCCCATTCCTTAATACCTCAAAGTTAATCCTCTGACCAGACGG
AGCCAGACACGAAACTCAACCTGTCGGCGATAATAGTCATCTACCGCATG
CAGCACTTCAGGTATCGGTCGCGCTGGTGAAGCTGCATCCCCCTTCATCT
TTTCCTCTTTTTTTTTTTTTCTCTTCTTCTTTTCCTTCTCTTTTTTGTCC
TTGCTGTTGCTGCTGCTGCTGCTCTTGCTTTTACTTTTGCTCTTGCTGCT
GCCACCTCCACCACCACTACCACCGTGCTTCTCTAAATATTTCATGGCTT
CCTTGACTAGCCGCCGCTCCTCTCTCTCACCTTTCTCCTCCTTCCGCCGA
TGTTTCTTGGCTCCTTCCCTTCCTCCCTCCTCCATTCCCTCACTCTCCTC
TCCGCTGGTCGCTCGAGGCGGAATCGTCTTCGCGCGTGCGTTTCTTATGG
TGATTATGTTGACTGGTTTCTTCTTCTCCTTCTTCTCCTTCTTCTCCTTC
TTATGCTTTTTGTTATCCTTCTTCTCTTTCTTGTCCTTCATTTTGCCGCT
GCTGCTGGTGCTGGTGCTATCCTTCTTGTCTCCGTCGTGCCGTCGAGGCC
CGCTCCCATTACTGACGTTGCCGCTGCTTGTGCTGTCTGGAGGCGGTGCC
ACCGTCACGCTAACCTTTCACATCGTTGCTGCTGTCCCCAACGTTGCCGT
CGCTGCTGCTTTCTGCTCTTGCTGCTCCTGCTGCTGCCATTGCTCCTATC
ACTTTTCGTGCTGGCCGACTTCCGAAGAGTCTTCCTGGCGAGGCATGCGT
CTCTTGAGACTGCGGGGCTGCTCCTTGCTACGCTACTGCTACCCCAAGCC
TGGCTGGTAGATTTTAAGGCGTCGTGCCT
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protein sequence of jgi.p|Nanoce1779_2|606021

>mRNA_9449-protein ID=mRNA_9449-protein|Name=jgi.p|Nanoce1779_2|606021|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MFLGSFPSSLLHSLTLLSAGRSRRNRLRACVSYGDYVDWFLLLLLLLLLL
LMLFVILLLFLVLHFAAAAGAGAILLVSVVPSRPAPITDVAAACAVWRRC
HRHANLSHRCCCPQRCRRCCFLLLLLLLLPLLLSLFVLADFRRVFLARHA
SLETAGLLLATLLLPQAWLV
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mRNA from alignment at scaffold_34:921..2181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9449 ID=mRNA_9449|Name=jgi.p|Nanoce1779_2|606021|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp|location=Sequence derived from alignment at scaffold_34:921..2181+ (Nannochloropsis oceanica)
AGGGAGGGATGGAGGGAGGGAGGGAGGGAGGGAGGTGGGAGGTGGTTTTG
AGGGATGTTGTATGGAGGGAGTGCCGTAATCAGTGCCTTCTTTTCATTCT
TTGCTTTCTTTCTTCTTCCTTTGGTCGTGATTATTCTTTCTTCCTTCTTC
TTTCACCTGACAGCTCCTGTATATTTGTGGGAACATCTCTCCCGCTCCCT
CCTTCCCTCCTCCCATTCCTTAATACCTCAAAGTTAATCCTCTGACCAGA
CGGAGCCAGACACGAAACTCAACCTGTCGGCGATAATAGTCATCTACCGC
ATGCAGCACTTCAGGTATCGGTCGCGCTGGTGAAGCTGCATCCCCCTTCA
TCTTTTCCTCTTTTTTTTTTTTTCTCTTCTTCTTTTCCTTCTCTTTTTTG
TCCTTGCTGTTGCTGCTGCTGCTGCTCTTGCTTTTACTTTTGCTCTTGCT
GCTGCCACCTCCACCACCACTACCACCGTGCTTCTCTAAATATTTCATGG
CTTCCTTGACTAGCCGCCGCTCCTCTCTCTCACCTTTCTCCTCCTTCCGC
CGATGTTTCTTGGCTCCTTCCCTTCCTCCCTCCTCCATTCCCTCACTCTC
CTCTCCGCTGGTCGCTCGAGGCGGAATCGTCTTCGCGCGTGCGTTTCTTA
TGGTGATTATGTTGACTGGTTTCTTCTTCTCCTTCTTCTCCTTCTTCTCC
TTCTTATGCTTTTTGTTATCCTTCTTCTCTTTCTTGTCCTTCATTTTGCC
GCTGCTGCTGGTGCTGGTGCTATCCTTCTTGTCTCCTAAAGTAGGAAGGT
AGGGGAAGGGTCGTGTGCGTGAGTAAATGAAAGGCAGACTTGACAACACT
TGAGTTTTACAAAGCAAAACGGGGCCCGCAAACAGGAGTCTGATAGCTCA
TTACACGCATACAATCAAAGCCAGTAAGGCAGGGCGTGGAACCGGGGTTA
GGCATTGCACGTACCGTCGTGCCGTCGAGGCCCGCTCCCATTACTGACGT
TGCCGCTGCTTGTGCTGTCTGGAGGCGGTGCCACCGTCACGCTAACCTTT
CACATCGTTGCTGCTGTCCCCAACGTTGCCGTCGCTGCTGCTTTCTGCTC
TTGCTGCTCCTGCTGCTGCCATTGCTCCTATCACTTTTCGTGCTGGCCGA
CTTCCGAAGAGTCTTCCTGGCGAGGCATGCGTCTCTTGAGACTGCGGGGC
TGCTCCTTGCTACGCTACTGCTACCCCAAGCCTGGCTGGTAGATTTTAAG
GCGTCGTGCCT
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Coding sequence (CDS) from alignment at scaffold_34:921..2181+

>mRNA_9449 ID=mRNA_9449|Name=jgi.p|Nanoce1779_2|606021|organism=Nannochloropsis oceanica|type=CDS|length=1022bp|location=Sequence derived from alignment at scaffold_34:921..2181+ (Nannochloropsis oceanica)
ATGTTTCTTGGCTCCTTCCCTTCCTCCCTCCTCCATTCCCTCACTCTCCT
CTCCGCTGGTCGCTCGAGGCGGAATCGTCTTCGCGCGTGCGTTTCTTATG
GTGATTATGTTGACTGGTTTCTTCTTCTCCTTCTTCTCCTTCTTCTCCTT
CTTATGCTTTTTGTTATCCTTCTTCTCTTTCTTGTCCTTCATTTTGCCGC
TGCTGCTGGTGCTGGTGCTATCCTTCTTGTCTCCGTCGTGCCGTCGAGGC
CCGCTCCCATTACTGACGTTGCCGCTGCTTGTGCTGTCTGGAGGCGGTGC
CACCGTCACGCTAACCTTTCACATCGTTGCTGCTGTCCCCAACGTTGCCG
TCGCTGCTGCTTTCTGCTCTTGCTGCTCCTGCTGCTGCCATTGCTCCTAT
CACTTTTCGTGCTGGCCGACTTCCGAAGAGTCTTCCTGGCGAGGCATGCG
TCTCTTGAGACTGCGGGGCTGCTCCTTGCTACGCTACTGCTACCCCAAGC
CTGGCTGGTAGATGTTTCTTGGCTCCTTCCCTTCCTCCCTCCTCCATTCC
CTCACTCTCCTCTCCGCTGGTCGCTCGAGGCGGAATCGTCTTCGCGCGTG
CGTTTCTTATGGTGATTATGTTGACTGGTTTCTTCTTCTCCTTCTTCTCC
TTCTTCTCCTTCTTATGCTTTTTGTTATCCTTCTTCTCTTTCTTGTCCTT
CATTTTGCCGCTGCTGCTGGTGCTGGTGCTATCCTTCTTGTCTCCGTCGT
GCCGTCGAGGCCCGCTCCCATTACTGACGTTGCCGCTGCTTGTGCTGTCT
GGAGGCGGTGCCACCGTCACGCTAACCTTTCACATCGTTGCTGCTGTCCC
CAACGTTGCCGTCGCTGCTGCTTTCTGCTCTTGCTGCTCCTGCTGCTGCC
ATTGCTCCTATCACTTTTCGTGCTGGCCGACTTCCGAAGAGTCTTCCTGG
CGAGGCATGCGTCTCTTGAGACTGCGGGGCTGCTCCTTGCTACGCTACTG
CTACCCCAAGCCTGGCTGGTAG
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Synonyms
Publications