jgi.p|Nanoce1779_2|574746, mRNA_943 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574746
Unique NamemRNA_943
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1983
Alignment locationscaffold_2:817403..819474 -

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Properties
Property NameValue
TranscriptId574832
TrackFilteredModels2
ProteinId574746
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:817403..819474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574746gene_943Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574746mRNA_943-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_943CDS_943Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_943 ID=mRNA_943|Name=jgi.p|Nanoce1779_2|574746|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp
AGGCAAAAAAAGCCCAAGCCCCACCCTTTAGCACAAGAATTTCTCTCGAG
TAGTTGCACATGCGTGTAGCAACGAGCCGCCCCCTCTGGCTCTTCACGCT
GGTGGTGGGCGGTGGGACCGCCGCATTACAACTTCGCCTCTTCAACAGCA
CCAGCAGACGCAGCCCACAAGAGCAATACAGGACGGACGCTCAATACAAG
GCTCGCTTCCTTGTAGAAGAGGATTTTAGACAAGAGCGACAGCCACTCAA
CAGTCCAAATTTCCAGAAGGACGTGACTGACTGGCTCCCTTATCTTCCCA
AGGTAAAGCGGTGTATGCAGAAGCAAGCTCACTTTCCAAATTCTTGCGAT
CACGGTCACACGCACCAACCTTACAGTGCTCATGGCAGCTTCTTGCTACG
ATCCAGACCTTCCCCATCGCACTGCCGGAGTTGGCCTGTGTGTACCTTAC
CACTGTTGCCTAACTTGACTTCCTGGAATCATGTCAAGCTCACGAGTACG
TTTCCCAAGGACCTGCGCTATTTCTCCATCTCCACCTACGACGAAAATGG
CATGCCCTCTGACACTTTGACGGATTACGAGGTGCTGCCTACAACGGGAA
CTAATCCGTACGCGTTCCGTGACGCCCACCAGACCCTGCCGGAAGGAGAG
GCGGGCACGTTCGAGGTCTACATCACCTTAGATGGCAAGGTACCAAACCT
TCCCAGAGAGAATCAATTGGCAGTGCTGGGAAAGAACGTGGATGCGAAGG
ATCGTGCCGCCTGCGACACGTCCGTCAAAGGTGGGTGCGCAGTAGTTCTC
ATTTTCCGCCTCTTTCACGTTCGGGATGGCTATGAGCCTTTCGATCTTGC
TACCTACGAGGACCCCACAGTGGTATGGGGCAACGTGGCCCCTGCCAAGC
TGTTTTACGGTAATCAATCGGCAGGCTGGATGGAATTGTTCCCCTGTGGT
CGCCCGGCCATGAATTTCACGACGCAAATGTTTGCCGAGGAGGCGCGCAG
AAGGTTGACGTCCTTCCGGTACAACCTACCCCGACATGAAGCCCTCAAGA
ATGTGAACGGCAACGCCTTTGTCCTGCCCGTCGATGACAATCAAGGGCTA
TTTAGCAACGCCGACTCCAATTATATGTTTGCGGGTAGTTACTACGAGGC
CAAGCCCGAGGGGCCGGTATACCTGCTGGGCCACATCACAGGGCGTATGC
CCTTCACGCCAACCGGTGGGTTGGAGCGTGGGCCTCGGTTTGTGGACGTA
CCAGCCGATTATGACATTCGGTACTTTGGCATTTCCACAGTGGATATGGC
GGGCGGGAAGCCGACATTGGACAGTGTGGCTGATATTGACATCGAGAACT
TTTACACAATAAACGGGGCGTTATCATGGACCGGCCGTAACTATTCCATC
ATCACGGGGCCCAGCAAGGACATTGCCGAGAAGTGCGGATTGTTCCAGGC
CTCGAGGAGTTTGTTTTTGTCCACCGCCACGCCTGCCTACTTGCAAAACG
AGGTTCCCACTGGCGACCTCATCCTGCCTTTGCCGACCTATGTCGCCTAC
GTCGTGCGCTACATGCTCGCCTCGCGCAATCACACCGATGCTTATATAGA
CGCAGCTTCTGACGCCAAGTCTGTGGAGTGGACCAGAAATGCTTGTGTCG
CCGCGGATGAGCACATTCAGGGTAAGGAGGAGCACGTCCATCTTACGTGT
TACGACCCGGATTGGGTGGCAGGGAAGATGAAGGAAAACGTGGCGACCAT
CCAATATTACCTGTGCGACATCAGCGCGCCCGAAAGCCAGCGCTTGACTC
CCTTCGGCCGTACACTCAACAAGCGCCGTAAGGACTGGATCGAAGGTGAA
GTAGAGGGGGGGAAAGGATGATAAAAGAAGAGCAAGTAATACAAATAAAT
TACAACAACCACTACGAAGAACATAAATGAATGATTGTGAAACAAAGAGA
CTGCTTACTCTTCTTCCATTTCTGTGTTTCTTC
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protein sequence of jgi.p|Nanoce1779_2|574746

>mRNA_943-protein ID=mRNA_943-protein|Name=jgi.p|Nanoce1779_2|574746|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MRVATSRPLWLFTLVVGGGTAALQLRLFNSTSRRSPQEQYRTDAQYKARF
LVEEDFRQERQPLNSPNFQKDVTDWLPYLPKVKRCMQKQAHFPNSCDHGH
THQPYSAHGSFLLRSRPSPSHCRSWPVCTLPLLPNLTSWNHVKLTSTFPK
DLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGT
FEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFR
LFHVRDGYEPFDLATYEDPTVVWGNVAPAKLFYGNQSAGWMELFPCGRPA
MNFTTQMFAEEARRRLTSFRYNLPRHEALKNVNGNAFVLPVDDNQGLFSN
ADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPAD
YDIRYFGISTVDMAGGKPTLDSVADIDIENFYTINGALSWTGRNYSIITG
PSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVR
YMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDP
DWVAGKMKENVATIQYYLCDISAPESQRLTPFGRTLNKRRKDWIEGEVEG
GKG*
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mRNA from alignment at scaffold_2:817403..819474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_943 ID=mRNA_943|Name=jgi.p|Nanoce1779_2|574746|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp|location=Sequence derived from alignment at scaffold_2:817403..819474- (Nannochloropsis oceanica)
AGGCAAAAAAAGCCCAAGCCCCACCCTTTGTAAGTCCCCTTCCCTCCCTC
CTTCTTCTTTCGCACATCACTGGCCCCTCACCACATAGTTCCCACTTATC
CACTTTGATCCAATACAGAGCACAAGAATTTCTCTCGAGTAGTTGCACAT
GCGTGTAGCAACGAGCCGCCCCCTCTGGCTCTTCACGCTGGTGGTGGGCG
GTGGGACCGCCGCATTACAACTTCGCCTCTTCAACAGCACCAGCAGACGC
AGCCCACAAGAGCAATACAGGACGGACGCTCAATACAAGGCTCGCTTCCT
TGTAGAAGAGGATTTTAGACAAGAGCGACAGCCACTCAACAGTCCAAATT
TCCAGAAGGACGTGACTGACTGGCTCCCTTATCTTCCCAAGGTAAAGCGG
TGTATGCAGAAGCAAGCTCACTTTCCAAATTCTTGCGATCACGGTCACAC
GCACCAACCTTACAGTGCTCATGGCAGCTTCTTGCTACGATCCAGACCTT
CCCCATCGCACTGCCGGAGTTGGCCTGTGTGTACCTTACCACTGTTGCCT
AACTTGACTTCCTGGAATCATGTCAAGCTCACGAGTACGTTTCCCAAGGA
CCTGCGCTATTTCTCCATCTCCACCTACGACGAAAATGGCATGCCCTCTG
ACACTTTGACGGATTACGAGGTGCTGCCTACAACGGGAACTAATCCGTAC
GCGTTCCGTGACGCCCACCAGACCCTGCCGGAAGGAGAGGCGGGCACGTT
CGAGGTCTACATCACCTTAGATGGCAAGGTACCAAACCTTCCCAGAGAGA
ATCAATTGGCAGTGCTGGGAAAGAACGTGGATGCGAAGGATCGTGCCGCC
TGCGACACGTCCGTCAAAGGTGGGTGCGCAGTAGTTCTCATTTTCCGCCT
CTTTCACGTTCGGGATGGCTATGAGCCTTTCGATCTTGCTACCTACGAGG
ACCCCACAGTGGTATGGGGCAACGTGGCCCCTGCCAAGCTGTTTTACGGT
AATCAATCGGCAGGCTGGATGGAATTGTTCCCCTGTGGTCGCCCGGCCAT
GAATTTCACGACGCAAATGTTTGCCGAGGAGGCGCGCAGAAGGTTGACGT
CCTTCCGGTACAACCTACCCCGACATGAAGCCCTCAAGAATGTGAACGGC
AACGCCTTTGTCCTGCCCGTCGATGACAATCAAGGGCTATTTAGCAACGC
CGACTCCAATTATATGTTTGCGGGTAGTTACTACGAGGCCAAGCCCGAGG
GGCCGGTATACCTGCTGGGCCACATCACAGGGCGTATGCCCTTCACGCCA
ACCGGTGGGTTGGAGCGTGGGCCTCGGTTTGTGGACGTACCAGCCGATTA
TGACATTCGGTACTTTGGCATTTCCACAGTGGATATGGCGGGCGGGAAGC
CGACATTGGACAGTGTGGCTGATATTGACATCGAGAACTTTTACACAATA
AACGGGGCGTTATCATGGACCGGCCGTAACTATTCCATCATCACGGGGCC
CAGCAAGGACATTGCCGAGAAGTGCGGATTGTTCCAGGCCTCGAGGAGTT
TGTTTTTGTCCACCGCCACGCCTGCCTACTTGCAAAACGAGGTTCCCACT
GGCGACCTCATCCTGCCTTTGCCGACCTATGTCGCCTACGTCGTGCGCTA
CATGCTCGCCTCGCGCAATCACACCGATGCTTATATAGACGCAGCTTCTG
ACGCCAAGTCTGTGGAGTGGACCAGAAATGCTTGTGTCGCCGCGGATGAG
CACATTCAGGGTAAGGAGGAGCACGTCCATCTTACGTGTTACGACCCGGA
TTGGGTGGCAGGGAAGATGAAGGAAAACGTGGCGACCATCCAATATTACC
TGTGCGACATCAGCGCGCCCGAAAGCCAGCGCTTGACTCCCTTCGGCCGT
ACACTCAACAAGCGCCGTAAGGACTGGATCGAAGGTGAAGTAGAGGGGGG
GAAAGGATGATAAAAGAAGAGCAAGTAATACAAATAAATTACAACAACCA
CTACGAAGAACATAAATGAATGATTGTGAAACAAAGAGACTGCTTACTCT
TCTTCCATTTCTGTGTTTCTTC
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Coding sequence (CDS) from alignment at scaffold_2:817403..819474-

>mRNA_943 ID=mRNA_943|Name=jgi.p|Nanoce1779_2|574746|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_2:817403..819474- (Nannochloropsis oceanica)
ATGCGTGTAGCAACGAGCCGCCCCCTCTGGCTCTTCACGCTGGTGGTGGG
CGGTGGGACCGCCGCATTACAACTTCGCCTCTTCAACAGCACCAGCAGAC
GCAGCCCACAAGAGCAATACAGGACGGACGCTCAATACAAGGCTCGCTTC
CTTGTAGAAGAGGATTTTAGACAAGAGCGACAGCCACTCAACAGTCCAAA
TTTCCAGAAGGACGTGACTGACTGGCTCCCTTATCTTCCCAAGGTAAAGC
GGTGTATGCAGAAGCAAGCTCACTTTCCAAATTCTTGCGATCACGGTCAC
ACGCACCAACCTTACAGTGCTCATGGCAGCTTCTTGCTACGATCCAGACC
TTCCCCATCGCACTGCCGGAGTTGGCCTGTGTGTACCTTACCACTGTTGC
CTAACTTGACTTCCTGGAATCATGTCAAGCTCACGAGTACGTTTCCCAAG
GACCTGCGCTATTTCTCCATCTCCACCTACGACGAAAATGGCATGCCCTC
TGACACTTTGACGGATTACGAGGTGCTGCCTACAACGGGAACTAATCCGT
ACGCGTTCCGTGACGCCCACCAGACCCTGCCGGAAGGAGAGGCGGGCACG
TTCGAGGTCTACATCACCTTAGATGGCAAGGTACCAAACCTTCCCAGAGA
GAATCAATTGGCAGTGCTGGGAAAGAACGTGGATGCGAAGGATCGTGCCG
CCTGCGACACGTCCGTCAAAGGTGGGTGCGCAGTAGTTCTCATTTTCCGC
CTCTTTCACGTTCGGGATGGCTATGAGCCTTTCGATCTTGCTACCTACGA
GGACCCCACAGTGGTATGGGGCAACGTGGCCCCTGCCAAGCTGTTTTACG
GTAATCAATCGGCAGGCTGGATGGAATTGTTCCCCTGTGGTCGCCCGGCC
ATGAATTTCACGACGCAAATGTTTGCCGAGGAGGCGCGCAGAAGGTTGAC
GTCCTTCCGGTACAACCTACCCCGACATGAAGCCCTCAAGAATGTGAACG
GCAACGCCTTTGTCCTGCCCGTCGATGACAATCAAGGGCTATTTAGCAAC
GCCGACTCCAATTATATGTTTGCGGGTAGTTACTACGAGGCCAAGCCCGA
GGGGCCGGTATACCTGCTGGGCCACATCACAGGGCGTATGCCCTTCACGC
CAACCGGTGGGTTGGAGCGTGGGCCTCGGTTTGTGGACGTACCAGCCGAT
TATGACATTCGGTACTTTGGCATTTCCACAGTGGATATGGCGGGCGGGAA
GCCGACATTGGACAGTGTGGCTGATATTGACATCGAGAACTTTTACACAA
TAAACGGGGCGTTATCATGGACCGGCCGTAACTATTCCATCATCACGGGG
CCCAGCAAGGACATTGCCGAGAAGTGCGGATTGTTCCAGGCCTCGAGGAG
TTTGTTTTTGTCCACCGCCACGCCTGCCTACTTGCAAAACGAGGTTCCCA
CTGGCGACCTCATCCTGCCTTTGCCGACCTATGTCGCCTACGTCGTGCGC
TACATGCTCGCCTCGCGCAATCACACCGATGCTTATATAGACGCAGCTTC
TGACGCCAAGTCTGTGGAGTGGACCAGAAATGCTTGTGTCGCCGCGGATG
AGCACATTCAGGGTAAGGAGGAGCACGTCCATCTTACGTGTTACGACCCG
GATTGGGTGGCAGGGAAGATGAAGGAAAACGTGGCGACCATCCAATATTA
CCTGTGCGACATCAGCGCGCCCGAAAGCCAGCGCTTGACTCCCTTCGGCC
GTACACTCAACAAGCGCCGTAAGGACTGGATCGAAGGTGAAGTAGAGGGG
GGGAAAGGATGA
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Synonyms
Publications