jgi.p|Nanoce1779_2|574735, mRNA_941 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574735
Unique NamemRNA_941
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1069
Alignment locationscaffold_2:810391..811604 +

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Properties
Property NameValue
TranscriptId574821
TrackFilteredModels2
ProteinId574735
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:810391..811604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574735gene_941Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574735mRNA_941-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_941CDS_941Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_941 ID=mRNA_941|Name=jgi.p|Nanoce1779_2|574735|organism=Nannochloropsis oceanica|type=mRNA|length=1069bp
GATGGTGATGTAATTATCATCCGTAATATTGGCATAAGGCAACCAAAAGG
CTTGTAAAGAGGTCAAAATTGGATAATCAACATACACACACCATGGAATC
ACGCCAAACTTAGCCTGTGTACTCAATAAATAATCTGTATAATAAAAATA
ATAAGCATATTTTTTTGCATCCATATTTGGTCAAGTTTTGATGGTGGTCG
GTCCTCTGAAGGGGTCTCCAGATGTGGTCTGCCACTTCCAGCTTTTGATT
GCTCTCGAACACGGCTTTGTTTTCCTAGTCTCAATTATTATGTCGGAGCA
AATCTAAAAGCTGATTTAAATGGTGGTGCTGGATTTCCGTAAAAATGACA
ATTATGGTATGTTACGCAATAATGGTCCCGGGGGCCCCACCCCAACAAAT
GCGATGGGGGGCATTCCGCAGCTGCAGGACCTCAATTGTTCAGAATAACT
TGTTCGTCACCACAGATAAAACACAGTTACAGGAGCATCTTCATCAAGCC
GACAGATGGCTGAGGAGTCTCCTGTACCCGCGCCGGCGAACCGCATGGCT
CCTCCTGCTTCGATGAGTACCTCGTCCTCCACCTGCGCATCATCGTCGTT
ATCGTCATTGGCCCCACACACCGCTCCTCCAAGGGAGCATATGCAGCTGT
ACACGGCGACGGAGCGGAGCACGGAGGGGGATTTGGTGGCGTCAATGCAT
CTACTCGTTGGGGACGGGTGCTGCTTTATCTGGATTGGAGAAGCCGGCAA
TGCCCCGCCCATGGGCTCGTTATGTGTGGCAACCATGACCCCTTATGACA
ACCTCCCCGTATCCTCCACCCTCTTGCGGGATGCCCCCGACAATGATCAG
TGCCAGTCAATGGCACATCGTTTGGCGAAGCGGACGGGGCAGCAGGTCTT
TAGTAGTTGCAGTCTGCCGGCCTCCCCCGCCCACTTGCCTCTGCTGGCGG
CTTTGGAGAAGCGGGCGTATGAAGTTTTGACAGAGCCAAATTGATGATAT
AGGCCTACGCGAAGAAAGAAAATGGAGAAGATACTTCCAGCTTTGCGATA
ACAAATATAACATGTGCCA
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protein sequence of jgi.p|Nanoce1779_2|574735

>mRNA_941-protein ID=mRNA_941-protein|Name=jgi.p|Nanoce1779_2|574735|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAEESPVPAPANRMAPPASMSTSSSTCASSSLSSLAPHTAPPREHMQLYT
ATERSTEGDLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNL
PVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLLAAL
EKRAYEVLTEPN*
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mRNA from alignment at scaffold_2:810391..811604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_941 ID=mRNA_941|Name=jgi.p|Nanoce1779_2|574735|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at scaffold_2:810391..811604+ (Nannochloropsis oceanica)
GATGGTGATGTAATTATCATCCGTAATATTGGCATAAGGCAACCAAAAGG
CTTGTAAAGAGGTCAAAATTGGATAATCAACATACACACACCATGGAATC
ACGCCAAACTTAGCCTGTGTACTCAATAAATAATCTGTATAATAAAAATA
ATAAGCATATTTTTTTGCATCCATATTTGGTCAAGTTTTGATGGTGGTCG
GTCCTCTGAAGGGGTCTCCAGATGTGGTCTGCCACTTCCAGCTTTTGATT
GCTCTCGAACACGGCTTTGTTTTCCTAGTCTCAATTATTATGTCGGAGCA
AATCTAAAAGCTGATTTAAATGGTGGTGCTGGATTTCCGTAAAAATGACA
ATTATGGTATGTTACGCAATAATGGTCCCGGGGGCCCCACCCCAACAAAT
GCGATGGGGGGCATTCCGCAGCTGCAGGACCTCAATTGTTCAGAATAACT
TGTTCGTCACCACAGATAAAACACAGTTACAGGAGCATCTTCATCAAGCC
GACAGATGGCTGAGGAGTCTCCTGTACCCGCGCCGGCGAACCGCATGGCT
CCTCCTGCTTCGATGAGTACCTCGTCCTCCACCTGCGCATCATCGTCGTT
ATCGTCATTGGGTAAGTCATCCTGGCCTGGTCTGGCGCTCCTTTTATGGT
TTCGATTGGGTGGCGGTAGGCTACACTTCAAAATCCTTGTAAGCCACGGT
TTTTGCACCCCTCTAAAAACTCCCCTTTTCTTACTCCCCTTCCGCCCTCC
CTACAGCCCCACACACCGCTCCTCCAAGGGAGCATATGCAGCTGTACACG
GCGACGGAGCGGAGCACGGAGGGGGATTTGGTGGCGTCAATGCATCTACT
CGTTGGGGACGGGTGCTGCTTTATCTGGATTGGAGAAGCCGGCAATGCCC
CGCCCATGGGCTCGTTATGTGTGGCAACCATGACCCCTTATGACAACCTC
CCCGTATCCTCCACCCTCTTGCGGGATGCCCCCGACAATGATCAGTGCCA
GTCAATGGCACATCGTTTGGCGAAGCGGACGGGGCAGCAGGTCTTTAGTA
GTTGCAGTCTGCCGGCCTCCCCCGCCCACTTGCCTCTGCTGGCGGCTTTG
GAGAAGCGGGCGTATGAAGTTTTGACAGAGCCAAATTGATGATATAGGCC
TACGCGAAGAAAGAAAATGGAGAAGATACTTCCAGCTTTGCGATAACAAA
TATAACATGTGCCA
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Coding sequence (CDS) from alignment at scaffold_2:810391..811604+

>mRNA_941 ID=mRNA_941|Name=jgi.p|Nanoce1779_2|574735|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_2:810391..811604+ (Nannochloropsis oceanica)
ATGGCTGAGGAGTCTCCTGTACCCGCGCCGGCGAACCGCATGGCTCCTCC
TGCTTCGATGAGTACCTCGTCCTCCACCTGCGCATCATCGTCGTTATCGT
CATTGGCCCCACACACCGCTCCTCCAAGGGAGCATATGCAGCTGTACACG
GCGACGGAGCGGAGCACGGAGGGGGATTTGGTGGCGTCAATGCATCTACT
CGTTGGGGACGGGTGCTGCTTTATCTGGATTGGAGAAGCCGGCAATGCCC
CGCCCATGGGCTCGTTATGTGTGGCAACCATGACCCCTTATGACAACCTC
CCCGTATCCTCCACCCTCTTGCGGGATGCCCCCGACAATGATCAGTGCCA
GTCAATGGCACATCGTTTGGCGAAGCGGACGGGGCAGCAGGTCTTTAGTA
GTTGCAGTCTGCCGGCCTCCCCCGCCCACTTGCCTCTGCTGGCGGCTTTG
GAGAAGCGGGCGTATGAAGTTTTGACAGAGCCAAATTGAATGGCTGAGGA
GTCTCCTGTACCCGCGCCGGCGAACCGCATGGCTCCTCCTGCTTCGATGA
GTACCTCGTCCTCCACCTGCGCATCATCGTCGTTATCGTCATTGGCCCCA
CACACCGCTCCTCCAAGGGAGCATATGCAGCTGTACACGGCGACGGAGCG
GAGCACGGAGGGGGATTTGGTGGCGTCAATGCATCTACTCGTTGGGGACG
GGTGCTGCTTTATCTGGATTGGAGAAGCCGGCAATGCCCCGCCCATGGGC
TCGTTATGTGTGGCAACCATGACCCCTTATGACAACCTCCCCGTATCCTC
CACCCTCTTGCGGGATGCCCCCGACAATGATCAGTGCCAGTCAATGGCAC
ATCGTTTGGCGAAGCGGACGGGGCAGCAGGTCTTTAGTAGTTGCAGTCTG
CCGGCCTCCCCCGCCCACTTGCCTCTGCTGGCGGCTTTGGAGAAGCGGGC
GTATGAAGTTTTGACAGAGCCAAATTGA
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Synonyms
Publications