|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 230098 |
| Track | FilteredModels2 |
| ProteinId | 230012 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:258759..260353 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_94 ID=mRNA_94|Name=jgi.p|Nanoce1779_2|230012|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
GTTCTCCCCCCTTCCCTGGCTTCCCCCTATCCCTTCTCCGTGAAAATTGT
GAAGGAGGTTTTGATGAGTATAATGGATAAAGAGAAACGTGGATATGTAT
GTGAGTTTGTCGGTGTCGTTTTGGTCTAGACTAAAATCTGGCTGTCGTTG
AGGCATCCAAACTCAACAAAGTAGAGAGAAGATGTTAGGGTTGAAGGAGG
GAACAAAGGAAGCAAAAGGCTTTACAGGCGCCAGCAAAAGAGGTAAATAT
GATGAAATGGACACATTACTCCAGGACGCGCCAATTGCATATAGTCATCC
ACCACCTCCGAAACCAGCACCGAGCAACGGCAGCGATGGCAGCAGCAATG
GCAGCAGCAGCAACAGCAAAAGAAAGGGAAAAGAAGAAGTAGAAAAAGGG
AGACAGGAGATGCAAGAAAGGAGAAGTGGGTCCTGGAAACAGACGGTCAG
ATGAATTGAACGCACACGCATGAGGCAAGCCAGAAAACCAAATGATTTTT
CAAGTCCTCGACGTCTCACGATACTTGTTTCGTTTGTGCTCCTCTTCGAC
CCCCAATTCTGTATGTCAAGTCTCCGCATCTACTTTTTCGATTTCTTCTT
CTCTTCCTTTCTTTATATCTTTTTTATCTTCCTACGACTCTTCCTCTCTC
TCATTTTTGTCTTACTTTTTTTCACTAACGGGCTTTCCAACCACTTTCTT
TTTGTCTTGTCGTTCAAAAAAATCACTCATCGCAAACATGCATGCCGCCC
CACCGGCTGCCACTACTCCATTTAGTGCCGCTCTTTTGACCCCTCCCAAG
GCCGAAGGCAAAGCTACCATGAGGCCAATTGCCCCAACCGTCAGCTCCCT
GTGCGTCCTCGCGAACTCATCAATTGTGCCCACCTCCTCCCCTAACCATG
ACAGATCTGGCTTGAGGCCTTCAATGGCCGCCGACGCATGTGCCTTCCCC
GTTTCAACAAACAAATCCGCCCTGCCCACCAAACCGTTTAGACTTTCCCG
ACATGACTTGAAAAAGGGGCGCAGTGGCGTGCCCTCCTCTTCTAAGTGCG
TATACAAGCGCAGTCCTTTTTTAATCGTTTCCCCGGGGCGCATCTCACTC
AAGGTGCCAAAAAAATTGGTGCCCTCCCTCTTATCATCTTTGGCTGCTGC
TGCTGCTACTGCTGTTGTTGTCGTTGTTGTTGCTGCTGGTGGTGCTGCTG
CTGCTCCTGTTGCCACTGCGGCCGCAGCCTTGACCTCCTCCGTAGACATG
ATTCCTCTGGTGGTTCTGATGACGCTTTTGATGGCGGTTGGGATAAAGTA
TTTGTATGATGTGAGGTATATGATGTGAAGGGTGAGGTCGGTGCTAGGGC
CAGGTGCCGGGGGGAAATGGAAGAAGCTACTGTATGTAAATACATATACA
AACTCGGCGGCACCATCATCCGGGGAGGTTGGCTTTCTTTCCCCAAGGTC
AACATCGAACTCATTAAAGAACCAACCAATTGATCAATCACTCAACCACT
CAATCAACCAAGCAATCAACCAATAAATCAATCAGCTACTCTAGATAGCG
AATTGTAAAGTTTCTACGCCTCTTTCCGGCTGATTTGGTCGTTTG back to topprotein sequence of jgi.p|Nanoce1779_2|230012 >mRNA_94-protein ID=mRNA_94-protein|Name=jgi.p|Nanoce1779_2|230012|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MIFQVLDVSRYLFRLCSSSTPNSVCQVSASTFSISSSLPFFISFLSSYDS
SSLSFLSYFFSLTGFPTTFFLSCRSKKSLIANMHAAPPAATTPFSAALLT
PPKAEGKATMRPIAPTVSSLCVLANSSIVPTSSPNHDRSGLRPSMAADAC
AFPVSTNKSALPTKPFRLSRHDLKKGRSGVPSSSKCVYKRSPFLIVSPGR
ISLKVPKKLVPSLLSSLAAAAATAVVVVVVAAGGAAAAPVATAAAALTSS
VDMIPLVVLMTLLMAVGIKYLYDVRYMM* back to topmRNA from alignment at scaffold_3:258759..260353- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_94 ID=mRNA_94|Name=jgi.p|Nanoce1779_2|230012|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at scaffold_3:258759..260353- (Nannochloropsis oceanica)
GTTCTCCCCCCTTCCCTGGCTTCCCCCTATCCCTTCTCCGTGAAAATTGT
GAAGGAGGTTTTGATGAGTATAATGGATAAAGAGAAACGTGGATATGTAT
GTGAGTTTGTCGGTGTCGTTTTGGTCTAGACTAAAATCTGGCTGTCGTTG
AGGCATCCAAACTCAACAAAGTAGAGAGAAGATGTTAGGGTTGAAGGAGG
GAACAAAGGAAGCAAAAGGCTTTACAGGCGCCAGCAAAAGAGGTAAATAT
GATGAAATGGACACATTACTCCAGGACGCGCCAATTGCATATAGTCATCC
ACCACCTCCGAAACCAGCACCGAGCAACGGCAGCGATGGCAGCAGCAATG
GCAGCAGCAGCAACAGCAAAAGAAAGGGAAAAGAAGAAGTAGAAAAAGGG
AGACAGGAGATGCAAGAAAGGAGAAGTGGGTCCTGGAAACAGACGGTCAG
ATGAATTGAACGCACACGCATGAGGCAAGCCAGAAAACCAAATGATTTTT
CAAGTCCTCGACGTCTCACGATACTTGTTTCGTTTGTGCTCCTCTTCGAC
CCCCAATTCTGTATGTCAAGTCTCCGCATCTACTTTTTCGATTTCTTCTT
CTCTTCCTTTCTTTATATCTTTTTTATCTTCCTACGACTCTTCCTCTCTC
TCATTTTTGTCTTACTTTTTTTCACTAACGGGCTTTCCAACCACTTTCTT
TTTGTCTTGTCGTTCAAAAAAATCACTCATCGCAAACATGCATGCCGCCC
CACCGGCTGCCACTACTCCATTTAGTGCCGCTCTTTTGACCCCTCCCAAG
GCCGAAGGCAAAGCTACCATGAGGCCAATTGCCCCAACCGTCAGCTCCCT
GTGCGTCCTCGCGAACTCATCAATTGTGCCCACCTCCTCCCCTAACCATG
ACAGATCTGGCTTGAGGCCTTCAATGGCCGCCGACGCATGTGCCTTCCCC
GTTTCAACAAACAAATCCGCCCTGCCCACCAAACCGTTTAGACTTTCCCG
ACATGACTTGAAAAAGGGGCGCAGTGGCGTGCCCTCCTCTTCTAAGTGCG
TATACAAGCGCAGTCCTTTTTTAATCGTTTCCCCGGGGCGCATCTCACTC
AAGGTGCCAAAAAAATTGGTGCCCTCCCTCTTATCATCTTTGGCTGCTGC
TGCTGCTACTGCTGTTGTTGTCGTTGTTGTTGCTGCTGGTGGTGCTGCTG
CTGCTCCTGTTGCCACTGCGGCCGCAGCCTTGACCTCCTCCGTAGACATG
ATTCCTCTGGTGGTTCTGATGACGCTTTTGATGGCGGTTGGGATAAAGTA
TTTGTATGATGTGAGGTATATGATGTGAAGGGTGAGGTCGGTGCTAGGGC
CAGGTGCCGGGGGGAAATGGAAGAAGCTACTGTATGTAAATACATATACA
AACTCGGCGGCACCATCATCCGGGGAGGTTGGCTTTCTTTCCCCAAGGTC
AACATCGAACTCATTAAAGAACCAACCAATTGATCAATCACTCAACCACT
CAATCAACCAAGCAATCAACCAATAAATCAATCAGCTACTCTAGATAGCG
AATTGTAAAGTTTCTACGCCTCTTTCCGGCTGATTTGGTCGTTTG back to topCoding sequence (CDS) from alignment at scaffold_3:258759..260353- >mRNA_94 ID=mRNA_94|Name=jgi.p|Nanoce1779_2|230012|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_3:258759..260353- (Nannochloropsis oceanica)
ATGATTTTTCAAGTCCTCGACGTCTCACGATACTTGTTTCGTTTGTGCTC
CTCTTCGACCCCCAATTCTGTATGTCAAGTCTCCGCATCTACTTTTTCGA
TTTCTTCTTCTCTTCCTTTCTTTATATCTTTTTTATCTTCCTACGACTCT
TCCTCTCTCTCATTTTTGTCTTACTTTTTTTCACTAACGGGCTTTCCAAC
CACTTTCTTTTTGTCTTGTCGTTCAAAAAAATCACTCATCGCAAACATGC
ATGCCGCCCCACCGGCTGCCACTACTCCATTTAGTGCCGCTCTTTTGACC
CCTCCCAAGGCCGAAGGCAAAGCTACCATGAGGCCAATTGCCCCAACCGT
CAGCTCCCTGTGCGTCCTCGCGAACTCATCAATTGTGCCCACCTCCTCCC
CTAACCATGACAGATCTGGCTTGAGGCCTTCAATGGCCGCCGACGCATGT
GCCTTCCCCGTTTCAACAAACAAATCCGCCCTGCCCACCAAACCGTTTAG
ACTTTCCCGACATGACTTGAAAAAGGGGCGCAGTGGCGTGCCCTCCTCTT
CTAAGTGCGTATACAAGCGCAGTCCTTTTTTAATCGTTTCCCCGGGGCGC
ATCTCACTCAAGGTGCCAAAAAAATTGGTGCCCTCCCTCTTATCATCTTT
GGCTGCTGCTGCTGCTACTGCTGTTGTTGTCGTTGTTGTTGCTGCTGGTG
GTGCTGCTGCTGCTCCTGTTGCCACTGCGGCCGCAGCCTTGACCTCCTCC
GTAGACATGATTCCTCTGGTGGTTCTGATGACGCTTTTGATGGCGGTTGG
GATAAAGTATTTGTATGATGTGAGGTATATGATGTGA back to top
|