jgi.p|Nanoce1779_2|627348, mRNA_939 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627348
Unique Name	mRNA_939
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1287
Alignment location	scaffold_2:800944..802569 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627434
Track	FilteredModels2
ProteinId	627348

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:800944..802569 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627348	gene_939	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627348	mRNA_939-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_939	CDS_939	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:800944..802569+
coding sequence from alignment at scaffold_2:800944..802569+

mRNA sequence

>mRNA_939 ID=mRNA_939|Name=jgi.p|Nanoce1779_2|627348|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
AGATTTCGTTGCCATAGCGCCCATACCGCCTCGCGGGCCCGCCTGCGAGG
CAATTACGCTTCACGTCATCATCACTTTGGCAACAAGCTTCCAGATTCCA
CCACACACAGTAACATGGGGCTAATGCACTCCAGTCACAACAAGCGGGCA
CACGTGATCAAGGAATTGGAGAGATTCACCAAACCTACTGGCCTGTATCC
GTCTTGCGCCTGGGAGGACAAGGTAGTGCGCAAGCTCATCCTTGACGGCA
AACTTGCTCCACGCTTCGCCGGTTTGGAAGACAAGCACAACGGCACTAAG
GAATGTCCCATTTGCTTCTTGCGCCACGTGGTACTCAACCGCACGAGCTG
CTGTCGTCACGGATTGTGTACTGAATGCTATTTGCAGGTACGGAAGCCAA
AGGGGACCTCTCCCTGTCCTTATTGCCAAAATTCCAAGCTCCAAATTCTC
TACGGGACGGACGACGAGGAAAAAATGGCAACTCAAGAGCTAGCCAACAT
TCGTCATTATGACGTTTTGACGGCCTCGCCTCAGTCGATCCCTGTTGCTA
TGTTTAGCAGCAGTAGATCGAAGGAGGAGGCTCAGGAGGCGTGGGCCGTT
GCGACGCAAACATCCTCTGGACCAGCCGCTCACGCTGTTGCTTCTCCTGT
TGCCCCGTGTGCGGCATCAGGCAGTGGTTATACGGCCAAGAACAGTAGAG
TTGAAAGTGAGAGTCACATCAATTCCTCCCGCACCACTGCCGGCAGTCTA
AGAGGCAGTAGCAGCAGCAAGAATAGCTACATGGGCGTCATTCCATATGC
GACCGTCAAGCAGCGGAGTCAGATTGAAGAGGAAATGCGGAAGCAGCACC
TCACCCCAACTTTAGGAGAAGAACTAGGAGAGAATACGACGGCAGCAGCA
GCGGCAGCAACAGCATTGCTCTTTTCTTTTCGAGGCGCAGACTGCCAGGG
CGGTGGCGGCGCAGGTGCCGGTGGAGAAAGAGTAGGGCGTGGAGGAGGAG
AAGAGGTGGAGCGACGGGCGGCGCAAGCGCAATCGTACCCGCGAGCGCAC
GAGGATTTTGTGATGCGCCGGGCCTTGCTGGAGTCCTTTGGAGTGCCGGC
TCATTTGCAGCACGTGGAGGACTTGATGTTGATGGAGGCGATACAACGGT
CGTTGGAAGAGACGGGAGATGGTGCTGGTGGAGGAGGAGGAGGAGGAGAA
GGAGGAGGAGAAGGAGGAGGAGGAAGGGAAGGAGCAGGAGGGAGGGGGGG
AGGGAAGGAGGAAGTTGAAAGGGGATTGGGTGGTTAA

protein sequence of jgi.p|Nanoce1779_2|627348

>mRNA_939-protein ID=mRNA_939-protein|Name=jgi.p|Nanoce1779_2|627348|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MGLMHSSHNKRAHVIKELERFTKPTGLYPSCAWEDKVVRKLILDGKLAPR
FAGLEDKHNGTKECPICFLRHVVLNRTSCCRHGLCTECYLQVRKPKGTSP
CPYCQNSKLQILYGTDDEEKMATQELANIRHYDVLTASPQSIPVAMFSSS
RSKEEAQEAWAVATQTSSGPAAHAVASPVAPCAASGSGYTAKNSRVESES
HINSSRTTAGSLRGSSSSKNSYMGVIPYATVKQRSQIEEEMRKQHLTPTL
GEELGENTTAAAAAATALLFSFRGADCQGGGGAGAGGERVGRGGGEEVER
RAAQAQSYPRAHEDFVMRRALLESFGVPAHLQHVEDLMLMEAIQRSLEET
GDGAGGGGGGGEGGGEGGGGREGAGGRGGGKEEVERGLGG*

mRNA from alignment at scaffold_2:800944..802569+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_939 ID=mRNA_939|Name=jgi.p|Nanoce1779_2|627348|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_2:800944..802569+ (Nannochloropsis oceanica)
AGATTTCGTTGCCATAGCGCCCATACCGCCTCGCGGGCCCGCCTGCGAGG
CAATTACGCTTCACGTCATCATCACTTTGGCAACAAGCTTCCAGATTCCA
CCACACACAGTAACATGGGGCTAATGCACTCCAGTCACAACAAGCGGGCA
CACGTGATCAAGGAATTGGAGAGGTAAGTCCTCAGGGAGCAAGCTTGAGC
TCGGGGAGGGAGGGGGAAGAAGGGGGAGGGAGGGCGAGGTGCTTGTTCGG
ACCGTTCCTTCCCTTCTGTTGTGTCCTGTGGCGGATGGCTTATGGTACAC
AGGGCATAACTGTAATCGTCTCCACGTTTGTGGCTATCGCCTTTCCCTGT
TCGATAAGACGTGGTTTACTAGCATAGGAAAGTCTGGCGCCTCTTTGTGA
GCGTCGTGGTCTTGTCCTCAATGCCAGCTCCTTGGAGCTGGCTTTTCTTC
CTTGTCTCGTCCACTCCTCGCAGTGAAATCAATTCTCCTCCCTCCTCTAA
TTCTACACGTAGATTCACCAAACCTACTGGCCTGTATCCGTCTTGCGCCT
GGGAGGACAAGGTAGTGCGCAAGCTCATCCTTGACGGCAAACTTGCTCCA
CGCTTCGCCGGTTTGGAAGACAAGCACAACGGCACTAAGGAATGTCCCAT
TTGCTTCTTGCGCCACGTGGTACTCAACCGCACGAGCTGCTGTCGTCACG
GATTGTGTACTGAATGCTATTTGCAGGTACGGAAGCCAAAGGGGACCTCT
CCCTGTCCTTATTGCCAAAATTCCAAGCTCCAAATTCTCTACGGGACGGA
CGACGAGGAAAAAATGGCAACTCAAGAGCTAGCCAACATTCGTCATTATG
ACGTTTTGACGGCCTCGCCTCAGTCGATCCCTGTTGCTATGTTTAGCAGC
AGTAGATCGAAGGAGGAGGCTCAGGAGGCGTGGGCCGTTGCGACGCAAAC
ATCCTCTGGACCAGCCGCTCACGCTGTTGCTTCTCCTGTTGCCCCGTGTG
CGGCATCAGGCAGTGGTTATACGGCCAAGAACAGTAGAGTTGAAAGTGAG
AGTCACATCAATTCCTCCCGCACCACTGCCGGCAGTCTAAGAGGCAGTAG
CAGCAGCAAGAATAGCTACATGGGCGTCATTCCATATGCGACCGTCAAGC
AGCGGAGTCAGATTGAAGAGGAAATGCGGAAGCAGCACCTCACCCCAACT
TTAGGAGAAGAACTAGGAGAGAATACGACGGCAGCAGCAGCGGCAGCAAC
AGCATTGCTCTTTTCTTTTCGAGGCGCAGACTGCCAGGGCGGTGGCGGCG
CAGGTGCCGGTGGAGAAAGAGTAGGGCGTGGAGGAGGAGAAGAGGTGGAG
CGACGGGCGGCGCAAGCGCAATCGTACCCGCGAGCGCACGAGGATTTTGT
GATGCGCCGGGCCTTGCTGGAGTCCTTTGGAGTGCCGGCTCATTTGCAGC
ACGTGGAGGACTTGATGTTGATGGAGGCGATACAACGGTCGTTGGAAGAG
ACGGGAGATGGTGCTGGTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGA
AGGAGGAGGAGGAAGGGAAGGAGCAGGAGGGAGGGGGGGAGGGAAGGAGG
AAGTTGAAAGGGGATTGGGTGGTTAA

Coding sequence (CDS) from alignment at scaffold_2:800944..802569+

>mRNA_939 ID=mRNA_939|Name=jgi.p|Nanoce1779_2|627348|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at scaffold_2:800944..802569+ (Nannochloropsis oceanica)
ATGGGGCTAATGCACTCCAGTCACAACAAGCGGGCACACGTGATCAAGGA
ATTGGAGAGATTCACCAAACCTACTGGCCTGTATCCGTCTTGCGCCTGGG
AGGACAAGGTAGTGCGCAAGCTCATCCTTGACGGCAAACTTGCTCCACGC
TTCGCCGGTTTGGAAGACAAGCACAACGGCACTAAGGAATGTCCCATTTG
CTTCTTGCGCCACGTGGTACTCAACCGCACGAGCTGCTGTCGTCACGGAT
TGTGTACTGAATGCTATTTGCAGGTACGGAAGCCAAAGGGGACCTCTCCC
TGTCCTTATTGCCAAAATTCCAAGCTCCAAATTCTCTACGGGACGGACGA
CGAGGAAAAAATGGCAACTCAAGAGCTAGCCAACATTCGTCATTATGACG
TTTTGACGGCCTCGCCTCAGTCGATCCCTGTTGCTATGTTTAGCAGCAGT
AGATCGAAGGAGGAGGCTCAGGAGGCGTGGGCCGTTGCGACGCAAACATC
CTCTGGACCAGCCGCTCACGCTGTTGCTTCTCCTGTTGCCCCGTGTGCGG
CATCAGGCAGTGGTTATACGGCCAAGAACAGTAGAGTTGAAAGTGAGAGT
CACATCAATTCCTCCCGCACCACTGCCGGCAGTCTAAGAGGCAGTAGCAG
CAGCAAGAATAGCTACATGGGCGTCATTCCATATGCGACCGTCAAGCAGC
GGAGTCAGATTGAAGAGGAAATGCGGAAGCAGCACCTCACCCCAACTTTA
GGAGAAGAACTAGGAGAGAATACGACGGCAGCAGCAGCGGCAGCAACAGC
ATTGCTCTTTTCTTTTCGAGGCGCAGACTGCCAGGGCGGTGGCGGCGCAG
GTGCCGGTGGAGAAAGAGTAGGGCGTGGAGGAGGAGAAGAGGTGGAGCGA
CGGGCGGCGCAAGCGCAATCGTACCCGCGAGCGCACGAGGATTTTGTGAT
GCGCCGGGCCTTGCTGGAGTCCTTTGGAGTGCCGGCTCATTTGCAGCACG
TGGAGGACTTGATGTTGATGGAGGCGATACAACGGTCGTTGGAAGAGACG
GGAGATGGTGCTGGTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGG
AGGAGGAGGAAGGGAAGGAGCAGGAGGGAGGGGGGGAGGGAAGGAGGAAG
TTGAAAGGGGATTGGGTGGTTAAATGGGGCTAATGCACTCCAGTCACAAC
AAGCGGGCACACGTGATCAAGGAATTGGAGAGATTCACCAAACCTACTGG
CCTGTATCCGTCTTGCGCCTGGGAGGACAAGGTAGTGCGCAAGCTCATCC
TTGACGGCAAACTTGCTCCACGCTTCGCCGGTTTGGAAGACAAGCACAAC
GGCACTAAGGAATGTCCCATTTGCTTCTTGCGCCACGTGGTACTCAACCG
CACGAGCTGCTGTCGTCACGGATTGTGTACTGAATGCTATTTGCAGGTAC
GGAAGCCAAAGGGGACCTCTCCCTGTCCTTATTGCCAAAATTCCAAGCTC
CAAATTCTCTACGGGACGGACGACGAGGAAAAAATGGCAACTCAAGAGCT
AGCCAACATTCGTCATTATGACGTTTTGACGGCCTCGCCTCAGTCGATCC
CTGTTGCTATGTTTAGCAGCAGTAGATCGAAGGAGGAGGCTCAGGAGGCG
TGGGCCGTTGCGACGCAAACATCCTCTGGACCAGCCGCTCACGCTGTTGC
TTCTCCTGTTGCCCCGTGTGCGGCATCAGGCAGTGGTTATACGGCCAAGA
ACAGTAGAGTTGAAAGTGAGAGTCACATCAATTCCTCCCGCACCACTGCC
GGCAGTCTAAGAGGCAGTAGCAGCAGCAAGAATAGCTACATGGGCGTCAT
TCCATATGCGACCGTCAAGCAGCGGAGTCAGATTGAAGAGGAAATGCGGA
AGCAGCACCTCACCCCAACTTTAGGAGAAGAACTAGGAGAGAATACGACG
GCAGCAGCAGCGGCAGCAACAGCATTGCTCTTTTCTTTTCGAGGCGCAGA
CTGCCAGGGCGGTGGCGGCGCAGGTGCCGGTGGAGAAAGAGTAGGGCGTG
GAGGAGGAGAAGAGGTGGAGCGACGGGCGGCGCAAGCGCAATCGTACCCG
CGAGCGCACGAGGATTTTGTGATGCGCCGGGCCTTGCTGGAGTCCTTTGG
AGTGCCGGCTCATTTGCAGCACGTGGAGGACTTGATGTTGATGGAGGCGA
TACAACGGTCGTTGGAAGAGACGGGAGATGGTGCTGGTGGAGGAGGAGGA
GGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGGAAGGGAAGGAGCAGGAGG
GAGGGGGGGAGGGAAGGAGGAAGTTGAAAGGGGATTGGGTGGTTAA

Synonyms

Publications