jgi.p|Nanoce1779_2|636217, mRNA_938 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636217
Unique NamemRNA_938
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length447
Alignment locationscaffold_2:799538..800545 -

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Properties
Property NameValue
TranscriptId636303
TrackFilteredModels2
ProteinId636217
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:799538..800545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636217gene_938Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636217mRNA_938-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_938CDS_938Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_938 ID=mRNA_938|Name=jgi.p|Nanoce1779_2|636217|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
ATGGATGCCGGCAGCAATTTAGAGCTCTCTGATCCTAGTGCCATAATCCA
GGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAGATGGCGACGAAGCTCC
ACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCTGGTCATCCAACAGCTA
ACGCCGCTGGACCCGTCCCGCAAGGCGTACAGATTGGTCGGGGGGGTCTT
AATGGAGCGAACGGTTGCCGAGGTCTTGCCTATTCTAAAAGAAACAGCGT
CAAAGCTCAGGACGATTGTCCCTCAACTGGACGAGGCCTTGGTGAAGAAG
CAGAAGCAAACGAGGGAATGGCGGGAAAAGTACAACATTCGAGCACAGAG
TCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCCGCGGCTGCTGCAGGTG
CTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGGGGTGTTGGCATAA
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protein sequence of jgi.p|Nanoce1779_2|636217

>mRNA_938-protein ID=mRNA_938-protein|Name=jgi.p|Nanoce1779_2|636217|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MDAGSNLELSDPSAIIQVFQRLQGECQQMATKLHELEQECSEHELVIQQL
TPLDPSRKAYRLVGGVLMERTVAEVLPILKETASKLRTIVPQLDEALVKK
QKQTREWREKYNIRAQSPKEIQAAQQKAAAAAGAGADGGEGSGGGVLA*
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mRNA from alignment at scaffold_2:799538..800545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_938 ID=mRNA_938|Name=jgi.p|Nanoce1779_2|636217|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at scaffold_2:799538..800545- (Nannochloropsis oceanica)
ATGGATGCCGGCAGCAATTTAGAGCTCTCTGATCCTAGTGCCATAATCCA
GGTACTTTTTTAATTGTGCTTGGAACTGTTGAGTGGAGTGCAAATGCTCG
AAAACCCCTTGTCCCCATCGCCCTGCCCGGTACCCCTCATACTCCAACCA
TCCATGCCAAGCACAGGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAGG
TACGTTATTGTGTAAATAAGCGGGCTAGGGAGGCTGATGAATGACAATCT
TGGTTAGCTATGATGGTTTGGCTTCGAGCACCCTGGGGCCTGGAGAAAGA
GAATTTTCAGGATCAATCCATTTATACAGCGAAACCCTATGTTTTTCTCA
ATCTCTTAGTGGAATGAACGTGTACCCATAAATGGAAACATAGATGTCAA
TCAGTGACCATAAACTTAGAAAGGACAAACATTAGCCAAAAAAGTCATGT
GTTGGGCCCTCTCCCATACTTGATGGTTTTGTGCTACAGCGGAAAATGTG
CCGGAAGGACAAGTTGCTGCCCGAACCTTGCTCCTCTTTGTGACTGCTTG
ACTGATCAATCTACTCTTCAACCTACTCCCTCCGTTGTTATGATCTATGA
CAAATGCTCACACATCCATCTCTCTTCCGACCTGTACACAAACAGATGGC
GACGAAGCTCCACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCTGGTCA
TCCAACAGCTAACGCCGCTGGACCCGTCCCGCAAGGCGTACAGATTGGTC
GGGGGGGTCTTAATGGAGCGAACGGTTGCCGAGGTCTTGCCTATTCTAAA
AGAAACAGCGTCAAAGCTCAGGACGATTGTCCCTCAACTGGACGAGGCCT
TGGTGAAGAAGCAGAAGCAAACGAGGGAATGGCGGGAAAAGTACAACATT
CGAGCACAGAGTCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCCGCGGC
TGCTGCAGGTGCTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGGGGTGT
TGGCATAA
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Coding sequence (CDS) from alignment at scaffold_2:799538..800545-

>mRNA_938 ID=mRNA_938|Name=jgi.p|Nanoce1779_2|636217|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_2:799538..800545- (Nannochloropsis oceanica)
ATGGCGACGAAGCTCCACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCT
GGTCATCCAACAGCTAACGCCGCTGGACCCGTCCCGCAAGGCGTACAGAT
TGGTCGGGGGGGTCTTAATGGAGCGAACGGTTGCCGAGGTCTTGCCTATT
CTAAAAGAAACAGCGTCAAAGCTCAGGACGATTGTCCCTCAACTGGACGA
GGCCTTGGTGAAGAAGCAGAAGCAAACGAGGGAATGGCGGGAAAAGTACA
ACATTCGAGCACAGAGTCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCC
GCGGCTGCTGCAGGTGCTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGG
GGTGTTGGCATAAGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAGATGG
ATGCCGGCAGCAATTTAGAGCTCTCTGATCCTAGTGCCATAATCCAGATG
GCGACGAAGCTCCACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCTGGT
CATCCAACAGCTAACGCCGCTGGACCCGTCCCGCAAGGCGTACAGATTGG
TCGGGGGGGTCTTAATGGAGCGAACGGTTGCCGAGGTCTTGCCTATTCTA
AAAGAAACAGCGTCAAAGCTCAGGACGATTGTCCCTCAACTGGACGAGGC
CTTGGTGAAGAAGCAGAAGCAAACGAGGGAATGGCGGGAAAAGTACAACA
TTCGAGCACAGAGTCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCCGCG
GCTGCTGCAGGTGCTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGGGGT
GTTGGCATAAGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAGATGGATG
CCGGCAGCAATTTAGAGCTCTCTGATCCTAGTGCCATAATCCAGATGGCG
ACGAAGCTCCACGAGCTGGAGCAAGAGTGCAGTGAGCACGAGCTGGTCAT
CCAACAGCTAACGCCGCTGGACCCGTCCCGCAAGGCGTACAGATTGGTCG
GGGGGGTCTTAATGGAGCGAACGGTTGCCGAGGTCTTGCCTATTCTAAAA
GAAACAGCGTCAAAGCTCAGGACGATTGTCCCTCAACTGGACGAGGCCTT
GGTGAAGAAGCAGAAGCAAACGAGGGAATGGCGGGAAAAGTACAACATTC
GAGCACAGAGTCCCAAGGAGATTCAGGCAGCGCAACAGAAGGCCGCGGCT
GCTGCAGGTGCTGGTGCGGATGGAGGGGAGGGGTCGGGAGGAGGGGTGTT
GGCATAAGTGTTCCAGAGACTTCAAGGAGAATGTCAGCAGATGGATGCCG
GCAGCAATTTAGAGCTCTCTGATCCTAGTGCCATAATCCAG
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Synonyms
Publications