jgi.p|Nanoce1779_2|272601, mRNA_9372 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|272601
Unique NamemRNA_9372
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length730
Alignment locationscaffold_35:235752..236809 -

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Properties
Property NameValue
TranscriptId272687
TrackFilteredModels2
ProteinId272601
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:235752..236809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|272601gene_9372Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|272601mRNA_9372-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9372CDS_9372Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9372 ID=mRNA_9372|Name=jgi.p|Nanoce1779_2|272601|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
ACATACAGGCTCGAGCAAGAAATAAACATCTACTTTGGGCACGCATGTTA
TTGCCTTCGCTGTGCATCACCTAGTGCCACGAAAAGCCAGGTTGCGCTCC
TCAACCACCACGCTCTTCACCTTCAATCTCGCAATGCTACCCTCCCTACG
CCTCGTCCGCCGCGCCCAGCAGCAACAGCAGCATTCCCACCTGGCCTGCT
TGATGGATTCCACCAGGCAATACGCCAAAATTCCCGTTGCGCGTGTGATG
GCAGCGGCTACGGAGAATAGCTTAAGAGGTGGGAGGGGAGGGCGAACACT
GTCGCGGGGTTGTGTCTCGTCCTCGTCCTCAGGCTCCTCCTCGATGACAC
AACTACCATCACCACCACCAGTGTCGGCTATGGGCGTGGAGCCAGAAAAT
AGCCTCCCGACCACGGCCAGGGAGGAGAAGCCCACTGGCCTCTCCTCTCC
CCCGTCTTCTAAGGGTCGAATCGCCCTGGAGGGAGGGCCGGAGGACGGGA
GGGAGGACGGGCGGGGAGGATTGCCGATAGTCCCCTATATGGGAGAGAAA
CACATGGGCCGTGATTACTACTCGAAGCGATTTCGGCTTTTGGTCCAGCA
CATGGTGGAGGGTGGGCCACCCGCCGCGATGCTGGAGGAGAATGAGGAGG
TGTGAAGGAAGGGAGAGAGGCGATGGGTTGGCCTGCCCTCATTCCAGTGG
AAGATGGCGGTTGTGAACTTCATGAACGAA
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protein sequence of jgi.p|Nanoce1779_2|272601

>mRNA_9372-protein ID=mRNA_9372-protein|Name=jgi.p|Nanoce1779_2|272601|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MLPSLRLVRRAQQQQQHSHLACLMDSTRQYAKIPVARVMAAATENSLRGG
RGGRTLSRGCVSSSSSGSSSMTQLPSPPPVSAMGVEPENSLPTTAREEKP
TGLSSPPSSKGRIALEGGPEDGREDGRGGLPIVPYMGEKHMGRDYYSKRF
RLLVQHMVEGGPPAAMLEENEEV*
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mRNA from alignment at scaffold_35:235752..236809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9372 ID=mRNA_9372|Name=jgi.p|Nanoce1779_2|272601|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp|location=Sequence derived from alignment at scaffold_35:235752..236809- (Nannochloropsis oceanica)
ACATACAGGCTCGAGCAAGAAATAAACATCTACTTTGGGCACGCATGTTA
TTGCCTTCGCTGTGCATCACCTAGTGCCACGAAAAGCCAGGTTGCGCTCC
TCAACCACCACGCTCTTCACCTTCAATCTCGCAATGCTACCCTCCCTACG
CCTCGTCCGCCGCGCCCAGCAGCAACAGCAGCATTCCCACCTGGCCTGCT
TGATGGATTCCACCAGGCAATACGCCAAAATTCCCGTTGCGCGTGTGATG
GCAGCGGCTACGGAGAATAGCTTAAGAGGTGGGAGGGGAGGGCGAACACT
GTCGCGGGGTTGTGTCTCGTCCTCGTCCTCAGGCTCCTCCTCGATGACAC
AACTACCATCACCACCACCAGTGTCGGCTATGGGCGTGGAGGTACATGGA
AGATAGCGATGTGGATGGAAGAGGAAAAAGTAGAGACGAGAAACGGGTTG
TAGTCTCGTGTCGTGGAGGATGCTCTCGAAAGGAAGTCTTATGCTTCCTT
ACTGGTCTCCCAATGCCCACCTTTTAAACTCTTCAATTTTCCTCTTTCAT
TTTTTCCGCTCACACAGCAGCCAGAAAATAGCCTCCCGACCACGGCCAGG
GAGGAGAAGCCCACTGGCCTCTCCTCTCCCCCGTCTTCTAAGGGTCGAAT
CGCCCTGGAGGGAGGGCCGGAGGACGGGAGGGAGGACGGGCGGGGAGGAT
TGCCGATAGTCCCCTATATGGGAGAGAAACACATGGGCCGTGATTACTAC
TCGAAGCGATTTCGGCTTTTGGTCCAGCACATGGTGGAGGGTGGGCCACC
CGCCGCGATGCTGGAGGAGAATGAGGAGGTGTGAAGGAAGGGAGAGAGGG
TGGGTAGCAGGGGAGGGAGGGACAATGTGTAGGAGGATGGAGATAGATGC
TCCCGTTCATCAGTCCATCTTGTTGGCTATCCCACTATTGTCTCAAAATC
ATCTCATCCTCCTTCCCTTGCTTTTTCCCTGCTCCCCTCCTCCCCCAGCG
ATGGGTTGGCCTGCCCTCATTCCAGTGGAAGATGGCGGTTGTGAACTTCA
TGAACGAA
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Coding sequence (CDS) from alignment at scaffold_35:235752..236809-

>mRNA_9372 ID=mRNA_9372|Name=jgi.p|Nanoce1779_2|272601|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_35:235752..236809- (Nannochloropsis oceanica)
CCAGAAAATAGCCTCCCGACCACGGCCAGGGAGGAGAAGCCCACTGGCCT
CTCCTCTCCCCCGTCTTCTAAGGGTCGAATCGCCCTGGAGGGAGGGCCGG
AGGACGGGAGGGAGGACGGGCGGGGAGGATTGCCGATAGTCCCCTATATG
GGAGAGAAACACATGGGCCGTGATTACTACTCGAAGCGATTTCGGCTTTT
GGTCCAGCACATGGTGGAGGGTGGGCCACCCGCCGCGATGCTGGAGGAGA
ATGAGGAGGTGTGAATGCTACCCTCCCTACGCCTCGTCCGCCGCGCCCAG
CAGCAACAGCAGCATTCCCACCTGGCCTGCTTGATGGATTCCACCAGGCA
ATACGCCAAAATTCCCGTTGCGCGTGTGATGGCAGCGGCTACGGAGAATA
GCTTAAGAGGTGGGAGGGGAGGGCGAACACTGTCGCGGGGTTGTGTCTCG
TCCTCGTCCTCAGGCTCCTCCTCGATGACACAACTACCATCACCACCACC
AGTGTCGGCTATGGGCGTGGAGCCAGAAAATAGCCTCCCGACCACGGCCA
GGGAGGAGAAGCCCACTGGCCTCTCCTCTCCCCCGTCTTCTAAGGGTCGA
ATCGCCCTGGAGGGAGGGCCGGAGGACGGGAGGGAGGACGGGCGGGGAGG
ATTGCCGATAGTCCCCTATATGGGAGAGAAACACATGGGCCGTGATTACT
ACTCGAAGCGATTTCGGCTTTTGGTCCAGCACATGGTGGAGGGTGGGCCA
CCCGCCGCGATGCTGGAGGAGAATGAGGAGGTGTGAATGCTACCCTCCCT
ACGCCTCGTCCGCCGCGCCCAGCAGCAACAGCAGCATTCCCACCTGGCCT
GCTTGATGGATTCCACCAGGCAATACGCCAAAATTCCCGTTGCGCGTGTG
ATGGCAGCGGCTACGGAGAATAGCTTAAGAGGTGGGAGGGGAGGGCGAAC
ACTGTCGCGGGGTTGTGTCTCGTCCTCGTCCTCAGGCTCCTCCTCGATGA
CACAACTACCATCACCACCACCAGTGTCGGCTATGGGCGTGGAG
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Synonyms
Publications